Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0000640

Physical Location & Seq

Genomic Coordinates Forward (+)

27643489 .. 27651365

Gene Structure 7877 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG258400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTGAAGTTTATGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATATTAGACGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGTATACACCCGCCTCGGATGGATAATGGTGTGTAGTAATCACATGAACATGCAAGATGAGGTCAACCAAATTCGTGCTGGCCATCTTAGTGGTGATTGCCACTGTAAACGTGAATTTTTGCTGTGCCAAGAAGATTCGAGAATTGTGAACAAATTCCAGGCAGAAACAGGGTCTCCATGCATAGCAGCCCACATTTTCAGGATTGAAGGAGCGTCTTGGAGAATATTACTTGCAGTCATGACTATGATCTATGAATTTGAGGATGGTCGGGAGTACAAGCAATCGCCTGCAGACTGGAAGAAGCTTGACGGGCTTTATGAATGTATACTTTGTGCTTGTTGTTCTACCTCATGCCCTTCCTACGGGTGGAATCCGGAGGAGTTCCTTGGACCAGCGGCTTTGCTCCATGCTTATCGATGGATATCTGACAGTCGGGATCAGTCCACAGAGGAGCGATTGCAGTCATTAACAGAGGACCAGAAGAGGCTATATAGATGCAACATTATAAAGAATTGCACTGCCACGTGCCCCAAAAGCCTCAATCCTGCCGATGCCATACAGAAAATGAAAAACAAGCATTTGTTCTCTCAGCCTGTTGAAGTGGTCGGGAAGCCATTACCAGTTTACGAGGGAACAGTAGGCAAGTATCCTGAGGCCCAGAAGGGCTATTTATTAGAAGAGAATGTTCTACTTCGTTGTGCTGCCAATGAACAAGTGTCGACGTGTTGTCTAACTTACATGCATTTAAAGAGAATAAAACATCTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000104 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006119 GO:0006121 GO:0006139 GO:0006163 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009060 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009987 GO:0015980 GO:0016020 GO:0016310 GO:0016491 GO:0016627 GO:0017144 GO:0019637 GO:0019693 GO:0022900 GO:0022904 GO:0032991 GO:0034641 GO:0042773 GO:0042775 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0045273 GO:0045281 GO:0045333 GO:0046034 GO:0046483 GO:0055086 GO:0055114 GO:0070469 GO:0071704 GO:0072521 GO:0098796 GO:0098803 GO:1901135 GO:1901360 GO:1901564 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00020 ko00190 ko01100 ko01110 ko01120 ko01130 ko01200 ko04714 ko04932 ko05010 ko05012 ko05016 map00020 map00190 map01100 map01110 map01120 map01130 map01200 map04714 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

Fer2_3 Fer4_17 Fer4_8

Protein Analysis

287

Amino Acids

32.69

Weight (kDa)

7.08

Isoelectric Point (pI)

57.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M76	PF09768	1 - 55	1e-05	Peptidase M76 family
Fer4_8	PF13183	137 - 211	5.4e-09	4Fe-4S dicluster domain
Fer4_17	PF13534	139 - 213	1.9e-08	4Fe-4S dicluster domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000640)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata	RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora	Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii	Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa	Rorug02G0515900 Rorug06G0038100.1
rosa_samantha	Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana	Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	602
AccI	GTMKAC	3 cut(s)	99, 421, 815
AccIII	TCCGGA	1 cut(s)	469
AciI	CCGC	2 cut(s)	106, 491
AclWI	GGATC	1 cut(s)	540
AcoI	YGGCCR	1 cut(s)	175
AcsI	RAATTY	4 cut(s)	165, 209, 248, 350
AcvI	CACGTG	1 cut(s)	621
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	2 cut(s)	458, 462
AflIII	ACRYGT	1 cut(s)	818
AgsI	TTSAA	2 cut(s)	302, 695
AhdI	GACNNNNNGTC	1 cut(s)	822
AjiI	CACGTC	1 cut(s)	819
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	1 cut(s)	400
AluI	AGCT	1 cut(s)	400
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	1 cut(s)	540
Aor13HI	TCCGGA	1 cut(s)	469
AoxI	GGCC	3 cut(s)	66, 175, 750
ApeKI	GCWGC	2 cut(s)	281, 797
ApoI	RAATTY	4 cut(s)	165, 209, 248, 350
Asp700I	GAANNNNTTC	1 cut(s)	248
AspS9I	GGNCC	4 cut(s)	66, 485, 571, 751
AsuHPI	GGTGA	2 cut(s)	16, 200
AvaII	GGWCC	2 cut(s)	485, 571
AxyI	CCTNAGG	1 cut(s)	747
BaeGI	GKGCMC	1 cut(s)	626
BalI	TGGCCA	1 cut(s)	177
BbrPI	CACGTG	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	293, 784
BccI	CCATC	4 cut(s)	108, 186, 353, 507
BceAI	ACGGC	1 cut(s)	53
BciT130I	CCWGG	1 cut(s)	254
BciVI	GTATCC	1 cut(s)	753
BcoDI	GTCTC	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	384
BfuI	GTATCC	1 cut(s)	753
BisI	GCNGC	3 cut(s)	282, 492, 798
BlsI	GCNGC	3 cut(s)	283, 493, 799
Bme1390I	CCNGG	1 cut(s)	254
Bme18I	GGWCC	2 cut(s)	485, 571
BmeRI	GACNNNNNGTC	1 cut(s)	822
BmgBI	CACGTC	1 cut(s)	819
BmgT120I	GGNCC	4 cut(s)	66, 485, 571, 751
BmrFI	CCNGG	1 cut(s)	254
BmsI	GCATC	3 cut(s)	31, 581, 637
BpmI	CTGGAG	2 cut(s)	38, 47
Bsa29I	ATCGAT	1 cut(s)	511
BsaAI	YACGTR	1 cut(s)	621
BsaBI	GATNNNNATC	1 cut(s)	517
BsaI	GGTCTC	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	109, 481
BsaWI	WCCGGW	1 cut(s)	469
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	2 cut(s)	458, 462
Bse1I	ACTGG	2 cut(s)	395, 716
Bse21I	CCTNAGG	1 cut(s)	747
Bse3DI	GCAATG	1 cut(s)	73
Bse8I	GATNNNNATC	1 cut(s)	517
BseAI	TCCGGA	1 cut(s)	469
BseBI	CCWGG	1 cut(s)	254
BseCI	ATCGAT	1 cut(s)	511
BseDI	CCNNGG	2 cut(s)	109, 481
BseGI	GGATG	2 cut(s)	119, 364
BseJI	GATNNNNATC	1 cut(s)	517
BseLI	CCNNNNNNNGG	2 cut(s)	458, 462
BseMI	GCAATG	1 cut(s)	73
BseMII	CTCAG	2 cut(s)	698, 738
BseNI	ACTGG	2 cut(s)	395, 716
BseRI	GAGGAG	2 cut(s)	488, 560
BseSI	GKGCMC	1 cut(s)	626
BseXI	GCAGC	2 cut(s)	293, 784
BseYI	CCCAGC	1 cut(s)	63
BshFI	GGCC	3 cut(s)	68, 177, 752
BshVI	ATCGAT	1 cut(s)	511
BsiSI	CCGG	2 cut(s)	93, 470
BslI	CCNNNNNNNGG	2 cut(s)	458, 462
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	3 cut(s)	68, 177, 752
Bso31I	GGTCTC	1 cut(s)	273
Bsp1286I	GDGCHC	1 cut(s)	626
Bsp13I	TCCGGA	1 cut(s)	469
Bsp143I	GATC	2 cut(s)	342, 532
BspACI	CCGC	2 cut(s)	106, 491
BspANI	GGCC	3 cut(s)	68, 177, 752
BspCNI	CTCAG	2 cut(s)	697, 739
BspDI	ATCGAT	1 cut(s)	511
BspEI	TCCGGA	1 cut(s)	469
BspHI	TCATGA	1 cut(s)	333
BspMAI	CTGCAG	1 cut(s)	388
BspPI	GGATC	1 cut(s)	540
BspTNI	GGTCTC	1 cut(s)	273
BsrDI	GCAATG	1 cut(s)	73
BsrI	ACTGG	2 cut(s)	395, 716
BssECI	CCNNGG	2 cut(s)	109, 481
BssMI	GATC	2 cut(s)	342, 532
BssNAI	GTATAC	2 cut(s)	100, 422
BssT1I	CCWWGG	1 cut(s)	481
Bst1107I	GTATAC	2 cut(s)	100, 422
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	3 cut(s)	200, 527, 733
Bst6I	CTCTTC	2 cut(s)	572, 768
BstBAI	YACGTR	1 cut(s)	621
BstC8I	GCNNGC	2 cut(s)	175, 384
BstDEI	CTNAG	3 cut(s)	182, 684, 747
BstF5I	GGATG	2 cut(s)	119, 364
BstKTI	GATC	2 cut(s)	345, 535
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	2 cut(s)	342, 532
BstMWI	GCNNNNNNNGC	2 cut(s)	406, 630
BstNI	CCWGG	1 cut(s)	254
BstNSI	RCATGY	2 cut(s)	148, 838
BstSCI	CCNGG	1 cut(s)	252
BstSFI	CTRYAG	1 cut(s)	384
BstSLI	GKGCMC	1 cut(s)	626
BstV1I	GCAGC	2 cut(s)	293, 784
BstXI	CCANNNNNNTGG	1 cut(s)	185
BstZ17I	GTATAC	2 cut(s)	100, 422
Bsu15I	ATCGAT	1 cut(s)	511
Bsu36I	CCTNAGG	1 cut(s)	747
BsuI	GTATCC	1 cut(s)	753
BsuRI	GGCC	3 cut(s)	68, 177, 752
BsuTUI	ATCGAT	1 cut(s)	511
BtrI	CACGTC	1 cut(s)	819
BtsCI	GGATG	2 cut(s)	119, 364
BtsI	GCAGTG	1 cut(s)	612
BtsIMutI	CAGTG	2 cut(s)	196, 612
Cac8I	GCNNGC	2 cut(s)	175, 384
CciI	TCATGA	1 cut(s)	333
Cfr13I	GGNCC	4 cut(s)	66, 485, 571, 751
ClaI	ATCGAT	1 cut(s)	511
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	7 cut(s)	139, 145, 273, 334, 447, 503, 835
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	3 cut(s)	182, 684, 747
DpnI	GATC	2 cut(s)	344, 534
DpnII	GATC	2 cut(s)	342, 532
DraI	TTTAAA	1 cut(s)	843
DriI	GACNNNNNGTC	1 cut(s)	822
EaeI	YGGCCR	1 cut(s)	175
Eam1104I	CTCTTC	2 cut(s)	572, 768
Eam1105I	GACNNNNNGTC	1 cut(s)	822
EarI	CTCTTC	2 cut(s)	572, 768
Eco130I	CCWWGG	1 cut(s)	481
Eco31I	GGTCTC	1 cut(s)	273
Eco32I	GATATC	1 cut(s)	519
Eco47I	GGWCC	2 cut(s)	485, 571
Eco72I	CACGTG	1 cut(s)	621
Eco81I	CCTNAGG	1 cut(s)	747
EcoRII	CCWGG	1 cut(s)	252
EcoRV	GATATC	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	481
EcoT22I	ATGCAT	2 cut(s)	278, 840
ErhI	CCWWGG	1 cut(s)	481
FaeI	CATG	7 cut(s)	142, 148, 276, 337, 450, 506, 838
FatI	CATG	7 cut(s)	138, 144, 272, 333, 446, 502, 834
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	3 cut(s)	99, 421, 815
Fnu4HI	GCNGC	3 cut(s)	282, 492, 798
FokI	GGATG	2 cut(s)	126, 371
Fsp4HI	GCNGC	3 cut(s)	282, 492, 798
GluI	GCNGC	3 cut(s)	282, 492, 798
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	2 cut(s)	38, 47
HaeIII	GGCC	3 cut(s)	68, 177, 752
HapII	CCGG	2 cut(s)	93, 470
HgaI	GACGC	1 cut(s)	297
Hin1II	CATG	7 cut(s)	142, 148, 276, 337, 450, 506, 838
HincII	GTYRAC	2 cut(s)	160, 816
HindII	GTYRAC	2 cut(s)	160, 816
HindIII	AAGCTT	1 cut(s)	398
HinfI	GANTC	2 cut(s)	230, 466
HpaII	CCGG	2 cut(s)	93, 470
HphI	GGTGA	2 cut(s)	16, 200
Hpy166II	GTNNAC	8 cut(s)	100, 160, 203, 244, 422, 540, 721, 816
Hpy188I	TCNGA	2 cut(s)	113, 523
Hpy188III	TCNNGA	9 cut(s)	26, 234, 295, 334, 365, 470, 530, 703, 746
Hpy8I	GTNNAC	8 cut(s)	100, 160, 203, 244, 422, 540, 721, 816
Hpy99I	CGWCG	1 cut(s)	820
HpyAV	CCTTC	3 cut(s)	296, 462, 751
HpyCH4III	ACNGT	3 cut(s)	200, 527, 733
HpyCH4IV	ACGT	3 cut(s)	205, 620, 818
HpyCH4V	TGCA	8 cut(s)	148, 276, 329, 386, 556, 594, 612, 838
HpyF10VI	GCNNNNNNNGC	2 cut(s)	406, 630
HpyF3I	CTNAG	3 cut(s)	182, 684, 747
HpySE526I	ACGT	3 cut(s)	205, 620, 818
Hsp92II	CATG	7 cut(s)	142, 148, 276, 337, 450, 506, 838
Kpn2I	TCCGGA	1 cut(s)	469
Kzo9I	GATC	2 cut(s)	342, 532
LmnI	GCTCC	4 cut(s)	19, 305, 504, 547
Lsp1109I	GCAGC	2 cut(s)	293, 784
LweI	GCATC	3 cut(s)	31, 581, 637
MaeII	ACGT	3 cut(s)	205, 620, 818
MalI	GATC	2 cut(s)	344, 534
MboI	GATC	2 cut(s)	342, 532
MboII	GAAGA	6 cut(s)	94, 97, 239, 406, 589, 785
MhlI	GDGCHC	1 cut(s)	626
MlsI	TGGCCA	1 cut(s)	177
MluCI	AATT	6 cut(s)	165, 209, 237, 248, 350, 607
MluNI	TGGCCA	1 cut(s)	177
Mox20I	TGGCCA	1 cut(s)	177
Mph1103I	ATGCAT	2 cut(s)	278, 840
MroI	TCCGGA	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	177
MseI	TTAA	2 cut(s)	563, 842
MslI	CAYNNNNRTG	3 cut(s)	143, 183, 338
Msp20I	TGGCCA	1 cut(s)	177
MspA1I	CMGCKG	1 cut(s)	491
MspI	CCGG	2 cut(s)	93, 470
MspR9I	CCNGG	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	254
MwoI	GCNNNNNNNGC	2 cut(s)	406, 630
NdeII	GATC	2 cut(s)	342, 532
NlaIII	CATG	7 cut(s)	142, 148, 276, 337, 450, 506, 838
NsiI	ATGCAT	2 cut(s)	278, 840
NspI	RCATGY	2 cut(s)	148, 838
PagI	TCATGA	1 cut(s)	333
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	230, 466
PkrI	GCNGC	3 cut(s)	283, 493, 799
PmaCI	CACGTG	1 cut(s)	621
PmlI	CACGTG	1 cut(s)	621
Ppu21I	YACGTR	1 cut(s)	621
PsiI	TTATAA	1 cut(s)	602
Psp6I	CCWGG	1 cut(s)	252
PspCI	CACGTG	1 cut(s)	621
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	252
PspPI	GGNCC	4 cut(s)	66, 485, 571, 751
PstI	CTGCAG	1 cut(s)	388
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
RseI	CAYNNNNRTG	3 cut(s)	143, 183, 338
SalI	GTCGAC	1 cut(s)	814
SaqAI	TTAA	2 cut(s)	563, 842
SatI	GCNGC	3 cut(s)	282, 492, 798
Sau3AI	GATC	2 cut(s)	342, 532
Sau96I	GGNCC	4 cut(s)	66, 485, 571, 751
ScrFI	CCNGG	1 cut(s)	254
SduI	GDGCHC	1 cut(s)	626
SetI	ASST	6 cut(s)	159, 208, 402, 446, 623, 821
SfaNI	GCATC	3 cut(s)	31, 581, 637
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	2 cut(s)	485, 571
SmiMI	CAYNNNNRTG	3 cut(s)	143, 183, 338
Sse9I	AATT	6 cut(s)	165, 209, 237, 248, 350, 607
SsiI	CCGC	2 cut(s)	106, 491
SspI	AATATT	1 cut(s)	321
StyD4I	CCNGG	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	481
TaaI	ACNGT	3 cut(s)	200, 527, 733
TaiI	ACGT	3 cut(s)	208, 623, 821
TaqI	TCGA	3 cut(s)	233, 511, 815
TasI	AATT	6 cut(s)	165, 209, 237, 248, 350, 607
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	2 cut(s)	230, 466
Tru1I	TTAA	2 cut(s)	563, 842
Tru9I	TTAA	2 cut(s)	563, 842
TscAI	CASTG	2 cut(s)	203, 619
TseI	GCWGC	2 cut(s)	281, 797
TspDTI	ATGAA	6 cut(s)	62, 155, 363, 429, 677, 819
TspRI	CASTG	2 cut(s)	203, 619
VpaK11BI	GGWCC	2 cut(s)	485, 571
XapI	RAATTY	4 cut(s)	165, 209, 248, 350
XceI	RCATGY	2 cut(s)	148, 838
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmiI	GTMKAC	3 cut(s)	99, 421, 815
XmnI	GAANNNNTTC	1 cut(s)	248
Zsp2I	ATGCAT	2 cut(s)	278, 840

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.