Rroxscaffold_5G00383470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000640
Physical Location & Seq
Reverse (-)
63059560 .. 63063049
3490 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00383470.1

Sequence Viewer

Length: 297 bp
ATGAAGGTTGCGGACTTCGGGACTTGCGGTCAAATTCTCTTCCTCTCATCTTCTGGAAATCTGGTATTCTGTGGCACCCAGATAAGAAACCCCACCAATAATAAAGAAGCTGAGACCAAATTCAAGCAGATCTCTGAGGCCTATGAGAGAAGATTACAAGCACAAGAAGGAGTACAAGAAGGAGTTCTTAATCCAAGGTGCTTCAAGGTGGAGAAGACACACACAAGGAGAGATCAAGGAGAGGAACTTTGGTGGTTCACTTCGATCGGATTAAAATCACGCTCCAAGGGTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.17

Weight (kDa)

8.91

Isoelectric Point (pI)

37.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 74
AciI CCGC 2 cut(s) 11, 27
AcsI RAATTY 2 cut(s) 33, 119
AfaI GTAC 1 cut(s) 174
AgsI TTSAA 2 cut(s) 124, 205
AhdI GACNNNNNGTC 1 cut(s) 27
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 107
AoxI GGCC 1 cut(s) 138
ApoI RAATTY 2 cut(s) 33, 119
Asp700I GAANNNNTTC 1 cut(s) 183
BanI GGYRCC 1 cut(s) 74
BbsI GAAGAC 1 cut(s) 221
BcoDI GTCTC 1 cut(s) 107
BglII AGATCT 1 cut(s) 129
BmeRI GACNNNNNGTC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 76
BpiI GAAGAC 1 cut(s) 221
BsaBI GATNNNNATC 1 cut(s) 274
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 2 cut(s) 194, 285
Bse8I GATNNNNATC 1 cut(s) 274
BseDI CCNNGG 2 cut(s) 194, 285
BseJI GATNNNNATC 1 cut(s) 274
BseMII CTCAG 2 cut(s) 102, 126
Bsh1285I CGRYCG 1 cut(s) 267
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 74
BsiEI CGRYCG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 34
BsmAI GTCTC 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 34
BsnI GGCC 1 cut(s) 140
Bso31I GGTCTC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 129, 232, 264
BspACI CCGC 2 cut(s) 11, 27
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 2 cut(s) 103, 127
BspLI GGNNCC 1 cut(s) 76
BspT107I GGYRCC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 194, 285
BssMI GATC 3 cut(s) 129, 232, 264
BssT1I CCWWGG 2 cut(s) 194, 285
Bst6I CTCTTC 1 cut(s) 44
BstDEI CTNAG 2 cut(s) 111, 135
BstKTI GATC 3 cut(s) 132, 235, 267
BstMAI GTCTC 1 cut(s) 107
BstMBI GATC 3 cut(s) 129, 232, 264
BstMCI CGRYCG 1 cut(s) 267
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 129
BstYI RGATCY 1 cut(s) 129
BsuRI GGCC 1 cut(s) 140
Csp6I GTAC 1 cut(s) 173
CviJI RGCY 2 cut(s) 110, 140
CviKI_1 RGCY 2 cut(s) 110, 140
CviQI GTAC 1 cut(s) 173
DdeI CTNAG 2 cut(s) 111, 135
DpnI GATC 3 cut(s) 131, 234, 266
DpnII GATC 3 cut(s) 129, 232, 264
DriI GACNNNNNGTC 1 cut(s) 27
Eam1104I CTCTTC 1 cut(s) 44
Eam1105I GACNNNNNGTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 194, 285
Eco147I AGGCCT 1 cut(s) 140
Eco31I GGTCTC 1 cut(s) 107
EcoT14I CCWWGG 2 cut(s) 194, 285
ErhI CCWWGG 2 cut(s) 194, 285
FaiI YATR 1 cut(s) 144
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FaqI GGGAC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 140
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 2 cut(s) 136, 269
Hpy188III TCNNGA 2 cut(s) 19, 54
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 2 cut(s) 161, 173
HpyF3I CTNAG 2 cut(s) 111, 135
Kzo9I GATC 3 cut(s) 129, 232, 264
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 3 cut(s) 39, 47, 92
MalI GATC 3 cut(s) 131, 234, 266
MboI GATC 3 cut(s) 129, 232, 264
MboII GAAGA 4 cut(s) 31, 42, 162, 226
MflI RGATCY 1 cut(s) 129
MluCI AATT 2 cut(s) 33, 119
MnlI CCTC 3 cut(s) 53, 130, 235
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 2 cut(s) 189, 272
NdeII GATC 3 cut(s) 129, 232, 264
NlaIV GGNNCC 1 cut(s) 76
PceI AGGCCT 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 183
Ple19I CGATCG 1 cut(s) 267
PspN4I GGNNCC 1 cut(s) 76
PsuI RGATCY 1 cut(s) 129
PvuI CGATCG 1 cut(s) 267
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
SaqAI TTAA 2 cut(s) 189, 272
Sau3AI GATC 3 cut(s) 129, 232, 264
SetI ASST 4 cut(s) 9, 112, 200, 210
Sse9I AATT 2 cut(s) 33, 119
SseBI AGGCCT 1 cut(s) 140
SsiI CCGC 2 cut(s) 11, 27
StuI AGGCCT 1 cut(s) 140
StyI CCWWGG 2 cut(s) 194, 285
TaqI TCGA 1 cut(s) 263
TasI AATT 2 cut(s) 33, 119
TatI WGTACW 1 cut(s) 172
Tru1I TTAA 2 cut(s) 189, 272
Tru9I TTAA 2 cut(s) 189, 272
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 2 cut(s) 33, 119
XmnI GAANNNNTTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.