Rroxscaffold_3G00267280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000640
Physical Location & Seq
Reverse (-)
60363862 .. 60366966
3105 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00267280.1

Sequence Viewer

Length: 513 bp
ATGCAATTGGGCAAATGGGTCGGTCAGTTGCAAATTGAAGATAAGTATAAAGCATGCATCATCAAATTAAAAGTTCATCTGTCAGTTCTGTTTATGGAAAAGGAAAGCAGTACTCCTGTTTGGATTAGACCTAATCCGTTTCCAAACTCGATAACGAAAAGCCCTTGTACGGACTCTATATCCAGAGCACCCTTTGTTTTTCCACAAATAATTGATGTCTCTGTTACTCAAGTTACTCGATTCGGTGGTTCTCTGCTAGTTACTCGATTTTGTAACATCAAGGAGGAGACTACAAGCACGAGAAGGAGTTCTCAATCCAAGGTGCTTCAAGGTGGAGGAGACACACACAAGGAGAGATCAAGGAGAGGAACTTTTGTGGTTTACTTGGATCGGATTGAGATCACGCTCCAAGGCTCCACATCCTCGGCGGCGGCACCAACAAATCAAACTCAATGTCATTCAGTCCCTCCTCGCCGTACAAGTTGTAGATCCGACGCTTATGCAAATCGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.02

Weight (kDa)

9.87

Isoelectric Point (pI)

72.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 433
AciI CCGC 2 cut(s) 428, 431
AclWI GGATC 2 cut(s) 396, 483
AfaI GTAC 3 cut(s) 112, 169, 478
AfiI CCNNNNNNNGG 1 cut(s) 169
AgsI TTSAA 2 cut(s) 38, 329
Alw21I GWGCWC 1 cut(s) 190
Alw26I GTCTC 3 cut(s) 223, 281, 333
AlwI GGATC 2 cut(s) 396, 483
ArsI GACNNNNNNTTYG 2 cut(s) 439, 471
Asp700I GAANNNNTTC 1 cut(s) 307
BanI GGYRCC 1 cut(s) 433
BauI CACGAG 1 cut(s) 298
Bbv12I GWGCWC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 459
BcgI CGANNNNNNTGC 2 cut(s) 35, 482
BcoDI GTCTC 3 cut(s) 223, 281, 333
BfaI CTAG 1 cut(s) 257
BisI GCNGC 2 cut(s) 429, 432
BlsI GCNGC 2 cut(s) 430, 433
BmcAI AGTACT 1 cut(s) 112
BmiI GGNNCC 2 cut(s) 415, 435
BmsI GCATC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 213
BsaBI GATNNNNATC 1 cut(s) 398
BsaJI CCNNGG 3 cut(s) 318, 409, 423
Bsc4I CCNNNNNNNGG 1 cut(s) 169
Bse8I GATNNNNATC 1 cut(s) 398
BseDI CCNNGG 3 cut(s) 318, 409, 423
BseGI GGATG 1 cut(s) 419
BseJI GATNNNNATC 1 cut(s) 398
BseLI CCNNNNNNNGG 1 cut(s) 169
BseRI GAGGAG 3 cut(s) 299, 351, 459
BshNI GGYRCC 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 190
BslFI GGGAC 1 cut(s) 449
BslI CCNNNNNNNGG 1 cut(s) 169
BsmAI GTCTC 3 cut(s) 223, 281, 333
BsmFI GGGAC 1 cut(s) 449
Bsp1286I GDGCHC 1 cut(s) 190
Bsp143I GATC 4 cut(s) 356, 388, 399, 488
BspACI CCGC 2 cut(s) 428, 431
BspLI GGNNCC 2 cut(s) 415, 435
BspPI GGATC 2 cut(s) 396, 483
BspT107I GGYRCC 1 cut(s) 433
BssECI CCNNGG 3 cut(s) 318, 409, 423
BssMI GATC 4 cut(s) 356, 388, 399, 488
BssSI CACGAG 1 cut(s) 298
BssT1I CCWWGG 2 cut(s) 318, 409
Bst2BI CACGAG 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 55
BstF5I GGATG 1 cut(s) 419
BstKTI GATC 4 cut(s) 359, 391, 402, 491
BstMAI GTCTC 3 cut(s) 223, 281, 333
BstMBI GATC 4 cut(s) 356, 388, 399, 488
BstNSI RCATGY 1 cut(s) 57
BstX2I RGATCY 1 cut(s) 488
BstYI RGATCY 1 cut(s) 488
BtsCI GGATG 1 cut(s) 419
Cac8I GCNNGC 1 cut(s) 55
CseI GACGC 1 cut(s) 503
Csp6I GTAC 3 cut(s) 111, 168, 477
CviAII CATG 1 cut(s) 54
CviJI RGCY 2 cut(s) 162, 414
CviKI_1 RGCY 2 cut(s) 162, 414
CviQI GTAC 3 cut(s) 111, 168, 477
DpnI GATC 4 cut(s) 358, 390, 401, 490
DpnII GATC 4 cut(s) 356, 388, 399, 488
Eco130I CCWWGG 2 cut(s) 318, 409
EcoT14I CCWWGG 2 cut(s) 318, 409
EcoT22I ATGCAT 1 cut(s) 59
ErhI CCWWGG 2 cut(s) 318, 409
FaeI CATG 1 cut(s) 57
FaiI YATR 5 cut(s) 48, 55, 95, 179, 501
FaqI GGGAC 1 cut(s) 449
FatI CATG 1 cut(s) 53
Fnu4HI GCNGC 2 cut(s) 429, 432
FokI GGATG 1 cut(s) 406
Fsp4HI GCNGC 2 cut(s) 429, 432
FspBI CTAG 1 cut(s) 257
GluI GCNGC 2 cut(s) 429, 432
HgaI GACGC 1 cut(s) 503
Hin1II CATG 1 cut(s) 57
HinfI GANTC 2 cut(s) 173, 240
Hpy166II GTNNAC 1 cut(s) 382
Hpy188I TCNGA 2 cut(s) 393, 493
Hpy188III TCNNGA 1 cut(s) 183
Hpy8I GTNNAC 1 cut(s) 382
Hpy99I CGWCG 1 cut(s) 497
HpyAV CCTTC 1 cut(s) 297
HpyCH4V TGCA 4 cut(s) 4, 31, 57, 503
Hsp92II CATG 1 cut(s) 57
Kzo9I GATC 4 cut(s) 356, 388, 399, 488
LmnI GCTCC 2 cut(s) 411, 419
LpnPI CCDG 2 cut(s) 129, 196
LweI GCATC 1 cut(s) 66
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 4 cut(s) 223, 232, 259, 272
MalI GATC 4 cut(s) 358, 390, 401, 490
MboI GATC 4 cut(s) 356, 388, 399, 488
MboII GAAGA 1 cut(s) 50
MfeI CAATTG 1 cut(s) 5
MflI RGATCY 1 cut(s) 488
MhlI GDGCHC 1 cut(s) 190
MluCI AATT 4 cut(s) 5, 33, 65, 210
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 6 cut(s) 277, 329, 359, 433, 477, 480
Mph1103I ATGCAT 1 cut(s) 59
MroXI GAANNNNTTC 1 cut(s) 307
MseI TTAA 1 cut(s) 68
MunI CAATTG 1 cut(s) 5
NdeII GATC 4 cut(s) 356, 388, 399, 488
NlaIII CATG 1 cut(s) 57
NlaIV GGNNCC 2 cut(s) 415, 435
NmeAIII GCCGAG 1 cut(s) 404
NsiI ATGCAT 1 cut(s) 59
NspI RCATGY 1 cut(s) 57
PaeI GCATGC 1 cut(s) 57
PdmI GAANNNNTTC 1 cut(s) 307
PfeI GAWTC 1 cut(s) 240
PkrI GCNGC 2 cut(s) 430, 433
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PspN4I GGNNCC 2 cut(s) 415, 435
PsuI RGATCY 1 cut(s) 488
RsaI GTAC 3 cut(s) 112, 169, 478
RsaNI GTAC 3 cut(s) 111, 168, 477
SaqAI TTAA 1 cut(s) 68
SatI GCNGC 2 cut(s) 429, 432
Sau3AI GATC 4 cut(s) 356, 388, 399, 488
ScaI AGTACT 1 cut(s) 112
SchI GAGTC 1 cut(s) 167
SduI GDGCHC 1 cut(s) 190
SetI ASST 3 cut(s) 133, 324, 334
SfaNI GCATC 1 cut(s) 66
SmlI CTYRAG 1 cut(s) 228
SmoI CTYRAG 1 cut(s) 228
SphI GCATGC 1 cut(s) 57
Sse9I AATT 4 cut(s) 5, 33, 65, 210
SsiI CCGC 2 cut(s) 428, 431
SspMI CTAG 1 cut(s) 257
StyI CCWWGG 2 cut(s) 318, 409
TaqI TCGA 3 cut(s) 149, 238, 265
TaqII GACCGA 1 cut(s) 11
TasI AATT 4 cut(s) 5, 33, 65, 210
TatI WGTACW 1 cut(s) 110
TauI GCSGC 2 cut(s) 431, 434
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TspDTI ATGAA 1 cut(s) 65
TspGWI ACGGA 2 cut(s) 126, 185
XceI RCATGY 1 cut(s) 57
XmnI GAANNNNTTC 1 cut(s) 307
XspI CTAG 1 cut(s) 257
ZrmI AGTACT 1 cut(s) 112
Zsp2I ATGCAT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.