Rroxscaffold_6G00395960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000640
Physical Location & Seq
Reverse (-)
17172267 .. 17198883
26617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00395960.1

Sequence Viewer

Length: 618 bp
ATGAAAGCCTCGTTCTTTAGCCACAAAGATGGCAAATCAGTTCATATCAGATCAAGTCGCTCTGTTCAAGGTATGGAAGAAGGTTTGATTGACGGGGAGTCTTTGAAGGAATTGAGTCCTAAAACAATCATTTTGATGAGAAGATTACAAGTACAAGGAGTACAAGAAGGAGTTCTTAATTCAAGGTGCTTCAAGGTGGAGGAAATACACACAAGGAGAGATCAAGGAGAGGAACTTTGGTGGTTTACTTGGATCGGATTAAAATCACGCTCCAAGGTTGAGAAAAATGCTAGAAGGGTTGAGATGAAGCTACTGTCAAAATTTGGTGACCATCGGAGGTGGTTGACCGGCAAAGGATGCGAGAGAGAAGGATTGAAGATCGGTGAAGGGAAAGGTGAAGAGATTGAAGAGAGAAAGCACGAAGGGTTTGAGAGAGAAGGGCCTCTTGCGTGTTTTGGAAATTGTCTGTTTTTACAACTTGAAATGGTTTGCGTGGATTGGATTGATGTGTTAGCAATTGATGGGGATGTAAGGAGAGCGAACGAGCTTGATGCCATGAGCAATGTTTTAGATTTGCAAAGCATAGCATGGGAGAAACAACTGAAGATGCAGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

205

Amino Acids

23.66

Weight (kDa)

6.97

Isoelectric Point (pI)

62.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 260
AcsI RAATTY 1 cut(s) 320
AfaI GTAC 2 cut(s) 153, 162
AgsI TTSAA 7 cut(s) 68, 106, 183, 193, 376, 407, 482
AhdI GACNNNNNGTC 1 cut(s) 97
AluBI AGCT 2 cut(s) 310, 547
AluI AGCT 2 cut(s) 310, 547
AlwI GGATC 1 cut(s) 260
AoxI GGCC 1 cut(s) 440
ApoI RAATTY 1 cut(s) 320
Asp700I GAANNNNTTC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 440
AsuHPI GGTGA 3 cut(s) 338, 395, 407
BccI CCATC 3 cut(s) 23, 339, 515
BcgI CGANNNNNNTGC 2 cut(s) 533, 567
BfaI CTAG 1 cut(s) 291
BmeRI GACNNNNNGTC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 440
BmsI GCATC 3 cut(s) 347, 541, 597
BsaBI GATNNNNATC 1 cut(s) 262
BsaJI CCNNGG 1 cut(s) 273
Bse118I RCCGGY 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 568
Bse8I GATNNNNATC 1 cut(s) 262
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 2 cut(s) 362, 532
BseJI GATNNNNATC 1 cut(s) 262
BseMI GCAATG 1 cut(s) 568
BshFI GGCC 1 cut(s) 442
BsiSI CCGG 1 cut(s) 348
BsnI GGCC 1 cut(s) 442
Bsp143I GATC 4 cut(s) 50, 220, 252, 378
BspANI GGCC 1 cut(s) 442
BspPI GGATC 1 cut(s) 260
BsrDI GCAATG 1 cut(s) 568
BsrFI RCCGGY 1 cut(s) 347
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 4 cut(s) 50, 220, 252, 378
BssT1I CCWWGG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 315
Bst6I CTCTTC 2 cut(s) 393, 402
BstAPI GCANNNNNTGC 1 cut(s) 357
BstEII GGTNACC 1 cut(s) 326
BstF5I GGATG 2 cut(s) 362, 532
BstKTI GATC 4 cut(s) 53, 223, 255, 381
BstMBI GATC 4 cut(s) 50, 220, 252, 378
BstMWI GCNNNNNNNGC 1 cut(s) 357
BstPI GGTNACC 1 cut(s) 326
BstXI CCANNNNNNTGG 1 cut(s) 29
BsuRI GGCC 1 cut(s) 442
BtsCI GGATG 2 cut(s) 362, 532
Cfr10I RCCGGY 1 cut(s) 347
Cfr13I GGNCC 1 cut(s) 440
Csp6I GTAC 2 cut(s) 152, 161
CviAII CATG 2 cut(s) 556, 588
CviJI RGCY 5 cut(s) 8, 21, 310, 442, 547
CviKI_1 RGCY 5 cut(s) 8, 21, 310, 442, 547
CviQI GTAC 2 cut(s) 152, 161
DpnI GATC 4 cut(s) 52, 222, 254, 380
DpnII GATC 4 cut(s) 50, 220, 252, 378
DriI GACNNNNNGTC 1 cut(s) 97
Eam1104I CTCTTC 2 cut(s) 393, 402
Eam1105I GACNNNNNGTC 1 cut(s) 97
EarI CTCTTC 2 cut(s) 393, 402
Eco130I CCWWGG 1 cut(s) 273
Eco91I GGTNACC 1 cut(s) 326
EcoO109I RGGNCCY 1 cut(s) 440
EcoO65I GGTNACC 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 273
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 2 cut(s) 559, 591
FaiI YATR 5 cut(s) 45, 74, 557, 584, 589
FalI AAGNNNNNCTT 4 cut(s) 159, 191, 429, 461
FatI CATG 2 cut(s) 555, 587
FokI GGATG 2 cut(s) 369, 539
FspBI CTAG 1 cut(s) 291
HaeIII GGCC 1 cut(s) 442
HapII CCGG 1 cut(s) 348
Hin1II CATG 2 cut(s) 559, 591
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 2 cut(s) 98, 115
HpaII CCGG 1 cut(s) 348
HphI GGTGA 3 cut(s) 338, 395, 407
Hpy166II GTNNAC 2 cut(s) 246, 345
Hpy188I TCNGA 3 cut(s) 50, 257, 336
Hpy8I GTNNAC 2 cut(s) 246, 345
HpyAV CCTTC 8 cut(s) 74, 100, 161, 288, 362, 380, 416, 431
HpyCH4III ACNGT 1 cut(s) 315
HpyCH4V TGCA 2 cut(s) 577, 610
HpyF10VI GCNNNNNNNGC 1 cut(s) 357
Hsp92II CATG 2 cut(s) 559, 591
Kzo9I GATC 4 cut(s) 50, 220, 252, 378
LmnI GCTCC 1 cut(s) 275
LpnPI CCDG 1 cut(s) 361
LweI GCATC 3 cut(s) 347, 541, 597
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 1 cut(s) 326
MalI GATC 4 cut(s) 52, 222, 254, 380
MboI GATC 4 cut(s) 50, 220, 252, 378
MboII GAAGA 6 cut(s) 89, 153, 388, 410, 419, 616
MfeI CAATTG 1 cut(s) 516
MluCI AATT 6 cut(s) 110, 178, 320, 460, 516, 613
MlyI GAGTC 2 cut(s) 107, 124
MnlI CCTC 5 cut(s) 19, 193, 223, 330, 453
MroXI GAANNNNTTC 1 cut(s) 171
MseI TTAA 3 cut(s) 177, 260, 616
MslI CAYNNNNRTG 2 cut(s) 27, 134
MspI CCGG 1 cut(s) 348
MunI CAATTG 1 cut(s) 516
MwoI GCNNNNNNNGC 1 cut(s) 357
NdeII GATC 4 cut(s) 50, 220, 252, 378
NlaIII CATG 2 cut(s) 559, 591
NmuCI GTSAC 1 cut(s) 326
PdmI GAANNNNTTC 1 cut(s) 171
PleI GAGTC 2 cut(s) 106, 123
PpsI GAGTC 2 cut(s) 106, 123
PspEI GGTNACC 1 cut(s) 326
PspPI GGNCC 1 cut(s) 440
RsaI GTAC 2 cut(s) 153, 162
RsaNI GTAC 2 cut(s) 152, 161
RseI CAYNNNNRTG 2 cut(s) 27, 134
SaqAI TTAA 3 cut(s) 177, 260, 616
Sau3AI GATC 4 cut(s) 50, 220, 252, 378
Sau96I GGNCC 1 cut(s) 440
SchI GAGTC 2 cut(s) 107, 124
SetI ASST 9 cut(s) 73, 85, 188, 198, 279, 312, 341, 397, 549
SfaNI GCATC 3 cut(s) 347, 541, 597
SmiMI CAYNNNNRTG 2 cut(s) 27, 134
Sse9I AATT 6 cut(s) 110, 178, 320, 460, 516, 613
SspMI CTAG 1 cut(s) 291
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 1 cut(s) 315
TasI AATT 6 cut(s) 110, 178, 320, 460, 516, 613
TatI WGTACW 2 cut(s) 151, 160
Tru1I TTAA 3 cut(s) 177, 260, 616
Tru9I TTAA 3 cut(s) 177, 260, 616
TseFI GTSAC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 3 cut(s) 17, 32, 320
XapI RAATTY 1 cut(s) 320
XmnI GAANNNNTTC 1 cut(s) 171
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.