Rw6G025650

Histone deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000640
Physical Location & Seq
Forward (+)
49035540 .. 49038744
3205 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G025650.1

Sequence Viewer

Length: 408 bp
ATGAACAAGGTAGTAGATCCAAAATCCATGCAGATCCCCCACTATCGATTTTGGATCTGCTCCGATGGTGAAGTTTCTGCTGGAGCATCTGGAGAAATCGATTTTCGATCTGCTCCGACGACGGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGTATACACCCGCCGCAGATGGATTCCAGGCAGAAACAGGGTCTCCATGCATAGCAGCCCACATTTTCAGGATTGAAGGAGCGGTTGCTGCTCATAATTTTGCTCCTGTGTTCATAATCTACAATGCTGGAACTGATATTCTAGATGGCGATCCTTTGGGCAGGTTGAAATTAACATCTTTCTCTGATCTTTTTCAGTCTTGGAGAATATTACTTGCAGTCATGACGATGATCTATGAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko05034 ko05165 ko05203 map05034 map05165 map05203
Pfam Domains
Protein Families
Hist_deacetyl

Protein Analysis

135

Amino Acids

14.78

Weight (kDa)

5.5

Isoelectric Point (pI)

40.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 315
AccBSI CCGCTC 1 cut(s) 245
AccI GTMKAC 1 cut(s) 167
AciI CCGC 3 cut(s) 174, 177, 245
AclWI GGATC 4 cut(s) 11, 28, 62, 308
AfiI CCNNNNNNNGG 1 cut(s) 122
AgsI TTSAA 2 cut(s) 239, 331
AhdI GACNNNNNGTC 1 cut(s) 123
AjnI CCWGG 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 210
AlwI GGATC 4 cut(s) 11, 28, 62, 308
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 218, 251
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 1 cut(s) 80
BbvI GCAGC 2 cut(s) 230, 238
BccI CCATC 3 cut(s) 59, 176, 302
BceAI ACGGC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 210
BfaI CTAG 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 315
BisI GCNGC 3 cut(s) 177, 219, 252
BlsI GCNGC 3 cut(s) 178, 220, 253
Bme1390I CCNGG 1 cut(s) 191
BmeRI GACNNNNNGTC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 134
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 95
BpmI CTGGAG 2 cut(s) 102, 111
Bsa29I ATCGAT 2 cut(s) 46, 99
BsaBI GATNNNNATC 1 cut(s) 312
BsaI GGTCTC 1 cut(s) 210
BsaXI ACNNNNNCTCC 2 cut(s) 190, 220
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse3DI GCAATG 1 cut(s) 141
Bse8I GATNNNNATC 1 cut(s) 312
BseBI CCWGG 1 cut(s) 191
BseCI ATCGAT 2 cut(s) 46, 99
BseJI GATNNNNATC 1 cut(s) 312
BseLI CCNNNNNNNGG 1 cut(s) 122
BseMI GCAATG 1 cut(s) 141
BseXI GCAGC 2 cut(s) 230, 238
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 1 cut(s) 136
BshVI ATCGAT 2 cut(s) 46, 99
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 1 cut(s) 210
BsnI GGCC 1 cut(s) 136
Bso31I GGTCTC 1 cut(s) 210
Bsp143I GATC 7 cut(s) 16, 33, 54, 107, 313, 349, 393
BspACI CCGC 3 cut(s) 174, 177, 245
BspANI GGCC 1 cut(s) 136
BspDI ATCGAT 2 cut(s) 46, 99
BspHI TCATGA 1 cut(s) 384
BspMI ACCTGC 1 cut(s) 315
BspPI GGATC 4 cut(s) 11, 28, 62, 308
BspTNI GGTCTC 1 cut(s) 210
BsrBI CCGCTC 1 cut(s) 245
BsrDI GCAATG 1 cut(s) 141
BssMI GATC 7 cut(s) 16, 33, 54, 107, 313, 349, 393
BssNAI GTATAC 1 cut(s) 168
Bst1107I GTATAC 1 cut(s) 168
Bst2UI CCWGG 1 cut(s) 191
BstKTI GATC 7 cut(s) 19, 36, 57, 110, 316, 352, 396
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 7 cut(s) 16, 33, 54, 107, 313, 349, 393
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 191
BstSCI CCNGG 1 cut(s) 189
BstV1I GCAGC 2 cut(s) 230, 238
BstX2I RGATCY 3 cut(s) 16, 33, 54
BstYI RGATCY 3 cut(s) 16, 33, 54
BstZ17I GTATAC 1 cut(s) 168
Bsu15I ATCGAT 2 cut(s) 46, 99
BsuRI GGCC 1 cut(s) 136
BsuTUI ATCGAT 2 cut(s) 46, 99
BveI ACCTGC 1 cut(s) 315
CciI TCATGA 1 cut(s) 384
Cfr13I GGNCC 1 cut(s) 134
ClaI ATCGAT 2 cut(s) 46, 99
CviAII CATG 3 cut(s) 28, 210, 385
CviJI RGCY 2 cut(s) 136, 221
CviKI_1 RGCY 2 cut(s) 136, 221
DpnI GATC 7 cut(s) 18, 35, 56, 109, 315, 351, 395
DpnII GATC 7 cut(s) 16, 33, 54, 107, 313, 349, 393
DriI GACNNNNNGTC 1 cut(s) 123
Eam1105I GACNNNNNGTC 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 215
FaeI CATG 3 cut(s) 31, 213, 388
FaiI YATR 8 cut(s) 29, 168, 211, 215, 258, 278, 386, 399
FatI CATG 3 cut(s) 27, 209, 384
FauI CCCGC 1 cut(s) 181
FblI GTMKAC 1 cut(s) 167
Fnu4HI GCNGC 3 cut(s) 177, 219, 252
Fsp4HI GCNGC 3 cut(s) 177, 219, 252
FspBI CTAG 1 cut(s) 305
GluI GCNGC 3 cut(s) 177, 219, 252
GsaI CCCAGC 1 cut(s) 135
GsuI CTGGAG 2 cut(s) 102, 111
HaeIII GGCC 1 cut(s) 136
HapII CCGG 1 cut(s) 161
Hin1II CATG 3 cut(s) 31, 213, 388
HinfI GANTC 1 cut(s) 186
HpaII CCGG 1 cut(s) 161
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 168
Hpy188I TCNGA 3 cut(s) 64, 117, 349
Hpy188III TCNNGA 4 cut(s) 90, 232, 305, 385
Hpy8I GTNNAC 1 cut(s) 168
Hpy99I CGWCG 2 cut(s) 121, 124
HpyAV CCTTC 1 cut(s) 233
HpyCH4V TGCA 3 cut(s) 31, 213, 380
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
Hsp92II CATG 3 cut(s) 31, 213, 388
Kzo9I GATC 7 cut(s) 16, 33, 54, 107, 313, 349, 393
LmnI GCTCC 5 cut(s) 65, 83, 118, 242, 271
Lsp1109I GCAGC 2 cut(s) 230, 238
LweI GCATC 1 cut(s) 95
MaeI CTAG 1 cut(s) 305
MalI GATC 7 cut(s) 18, 35, 56, 109, 315, 351, 395
MbiI CCGCTC 1 cut(s) 245
MboI GATC 7 cut(s) 16, 33, 54, 107, 313, 349, 393
MboII GAAGA 2 cut(s) 162, 165
MflI RGATCY 3 cut(s) 16, 33, 54
MluCI AATT 3 cut(s) 259, 332, 401
MmeI TCCRAC 1 cut(s) 140
Mph1103I ATGCAT 1 cut(s) 215
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 389
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 191
MvaI CCWGG 1 cut(s) 191
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 7 cut(s) 16, 33, 54, 107, 313, 349, 393
NlaIII CATG 3 cut(s) 31, 213, 388
NsiI ATGCAT 1 cut(s) 215
PagI TCATGA 1 cut(s) 384
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 3 cut(s) 178, 220, 253
Psp6I CCWGG 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 189
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 3 cut(s) 16, 33, 54
RseI CAYNNNNRTG 1 cut(s) 389
SaqAI TTAA 1 cut(s) 335
SatI GCNGC 3 cut(s) 177, 219, 252
Sau3AI GATC 7 cut(s) 16, 33, 54, 107, 313, 349, 393
Sau96I GGNCC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 191
SetI ASST 2 cut(s) 12, 329
SfaNI GCATC 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 389
Sse9I AATT 3 cut(s) 259, 332, 401
SsiI CCGC 3 cut(s) 174, 177, 245
SspI AATATT 1 cut(s) 372
SspMI CTAG 1 cut(s) 305
StyD4I CCNGG 1 cut(s) 189
TaqI TCGA 3 cut(s) 46, 99, 106
TasI AATT 3 cut(s) 259, 332, 401
TauI GCSGC 1 cut(s) 179
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TseI GCWGC 2 cut(s) 218, 251
TspDTI ATGAA 3 cut(s) 17, 130, 265
XbaI TCTAGA 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 167
XspI CTAG 1 cut(s) 305
Zsp2I ATGCAT 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.