Rroxscaffold_3G00241910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000640
Physical Location & Seq
Reverse (-)
34229717 .. 34230962
1246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00241910.1

Sequence Viewer

Length: 546 bp
ATGATCGGGGTTCCCGATATTTCCCCGAGGGGTATTAGGACCCTCGGTGGGAGCTTTCCTTACTTCTATATTGGCGATACGAGTCTTGTGCTTCGATACTTGTGCACTCGGGAGGTATATGCATACCAACAAGTCCCCCAAGTCCCGGTCGAGAGTTCTCTTGGGTGGGGAGTTTGTCCTTGCGAAGTATCGGAAGTGCAAGGAGAGTTTATGCCACGTGGCTTTTGTACAACCATTACCCCCGGTCCCCCAAGTCCCCGTGCGAGAGGAGTCTTGGGCCGGGGTGAGGAGATCATTCTCGCAATCGTCATTGTGTTTCTATCGCGAATTTGTGGTAGGCATCGTGGTAGCGGTAGGCTAGCGGGTTCCTCTCGTGGAGGTGAAGGAGTTTCTCGCGGTGGTGTTAGCGCTTCTCGTGGAGGTGGCAAGGGTGCTTCTCGAGGAAGAGGCGGGGGTGCTTCTCGCCGCTGTGGTGAGGGTACTCCCCACGGGGGCGCCGTTGGCACTTCCCGAGGAGGTGGCGATGGTTCTTCTCGTTGGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

18.68

Weight (kDa)

10.07

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 494
AccII CGCG 2 cut(s) 325, 396
AciI CCGC 5 cut(s) 351, 362, 396, 450, 466
AcsI RAATTY 1 cut(s) 327
AcvI CACGTG 1 cut(s) 218
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 2 cut(s) 229, 481
AfeI AGCGCT 1 cut(s) 409
AfiI CCNNNNNNNGG 4 cut(s) 48, 145, 286, 491
AluBI AGCT 1 cut(s) 54
AluI AGCT 1 cut(s) 54
Alw21I GWGCWC 1 cut(s) 107
Alw44I GTGCAC 1 cut(s) 103
Ama87I CYCGRG 4 cut(s) 25, 108, 438, 510
Aor51HI AGCGCT 1 cut(s) 409
AoxI GGCC 1 cut(s) 277
ApaLI GTGCAC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 327
AspLEI GCGC 2 cut(s) 410, 497
AspS9I GGNCC 3 cut(s) 39, 245, 277
AsuC2I CCSGG 3 cut(s) 146, 243, 281
AsuHPI GGTGA 3 cut(s) 296, 392, 485
AsuNHI GCTAGC 1 cut(s) 358
AvaI CYCGRG 4 cut(s) 25, 108, 438, 510
AvaII GGWCC 2 cut(s) 39, 245
BaeGI GKGCMC 1 cut(s) 107
BanI GGYRCC 1 cut(s) 494
BauI CACGAG 2 cut(s) 372, 414
BbrPI CACGTG 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 107
BccI CCATC 1 cut(s) 518
BceAI ACGGC 1 cut(s) 482
BcgI CGANNNNNNTGC 4 cut(s) 70, 84, 104, 118
BcnI CCSGG 3 cut(s) 146, 243, 281
BfaI CTAG 1 cut(s) 359
BfoI RGCGCY 2 cut(s) 411, 498
BisI GCNGC 1 cut(s) 466
BlsI GCNGC 1 cut(s) 467
Bme1390I CCNGG 3 cut(s) 146, 243, 281
Bme18I GGWCC 2 cut(s) 39, 245
BmeT110I CYCGRG 4 cut(s) 25, 108, 438, 510
BmgT120I GGNCC 3 cut(s) 39, 245, 277
BmiI GGNNCC 5 cut(s) 12, 41, 247, 367, 496
BmrFI CCNGG 3 cut(s) 146, 243, 281
BmsI GCATC 1 cut(s) 349
BmtI GCTAGC 1 cut(s) 362
BpuMI CCSGG 3 cut(s) 146, 243, 281
BsaAI YACGTR 1 cut(s) 218
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 6 cut(s) 26, 43, 241, 280, 487, 511
Bsc4I CCNNNNNNNGG 4 cut(s) 48, 145, 286, 491
BseDI CCNNGG 6 cut(s) 26, 43, 241, 280, 487, 511
BseLI CCNNNNNNNGG 4 cut(s) 48, 145, 286, 491
BseRI GAGGAG 3 cut(s) 282, 302, 528
BseSI GKGCMC 1 cut(s) 107
Bsh1236I CGCG 2 cut(s) 325, 396
Bsh1285I CGRYCG 1 cut(s) 150
BshFI GGCC 1 cut(s) 279
BshNI GGYRCC 1 cut(s) 494
BsiEI CGRYCG 1 cut(s) 150
BsiHKAI GWGCWC 1 cut(s) 107
BsiHKCI CYCGRG 4 cut(s) 25, 108, 438, 510
BsiSI CCGG 3 cut(s) 146, 243, 280
BslFI GGGAC 4 cut(s) 119, 128, 231, 240
BslI CCNNNNNNNGG 4 cut(s) 48, 145, 286, 491
BsmFI GGGAC 4 cut(s) 119, 128, 231, 240
BsnI GGCC 1 cut(s) 279
BsoBI CYCGRG 4 cut(s) 25, 108, 438, 510
Bsp1286I GDGCHC 1 cut(s) 107
Bsp1407I TGTACA 1 cut(s) 227
Bsp143I GATC 2 cut(s) 3, 291
Bsp68I TCGCGA 1 cut(s) 325
BspACI CCGC 5 cut(s) 351, 362, 396, 450, 466
BspANI GGCC 1 cut(s) 279
BspFNI CGCG 2 cut(s) 325, 396
BspLI GGNNCC 5 cut(s) 12, 41, 247, 367, 496
BspOI GCTAGC 1 cut(s) 362
BspT107I GGYRCC 1 cut(s) 494
BsrGI TGTACA 1 cut(s) 227
BssECI CCNNGG 6 cut(s) 26, 43, 241, 280, 487, 511
BssMI GATC 2 cut(s) 3, 291
BssNI GRCGYC 1 cut(s) 495
BssSI CACGAG 2 cut(s) 372, 414
Bst2BI CACGAG 2 cut(s) 372, 414
Bst6I CTCTTC 1 cut(s) 439
BstACI GRCGYC 1 cut(s) 495
BstAUI TGTACA 1 cut(s) 227
BstBAI YACGTR 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 360
BstDSI CCRYGG 1 cut(s) 487
BstFNI CGCG 2 cut(s) 325, 396
BstH2I RGCGCY 2 cut(s) 411, 498
BstHHI GCGC 2 cut(s) 410, 497
BstKTI GATC 2 cut(s) 6, 294
BstMBI GATC 2 cut(s) 3, 291
BstMCI CGRYCG 1 cut(s) 150
BstMWI GCNNNNNNNGC 1 cut(s) 501
BstSCI CCNGG 3 cut(s) 144, 241, 279
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 2 cut(s) 325, 396
BsuRI GGCC 1 cut(s) 279
BtgI CCRYGG 1 cut(s) 487
BtgZI GCGATG 1 cut(s) 537
BtuMI TCGCGA 1 cut(s) 325
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 2 cut(s) 410, 497
Cfr13I GGNCC 3 cut(s) 39, 245, 277
Csp6I GTAC 2 cut(s) 228, 480
CviJI RGCY 4 cut(s) 54, 222, 279, 358
CviKI_1 RGCY 4 cut(s) 54, 222, 279, 358
CviQI GTAC 2 cut(s) 228, 480
DinI GGCGCC 1 cut(s) 496
DpnI GATC 2 cut(s) 5, 293
DpnII GATC 2 cut(s) 3, 291
Eam1104I CTCTTC 1 cut(s) 439
EarI CTCTTC 1 cut(s) 439
Eco47I GGWCC 2 cut(s) 39, 245
Eco47III AGCGCT 1 cut(s) 409
Eco72I CACGTG 1 cut(s) 218
Eco88I CYCGRG 4 cut(s) 25, 108, 438, 510
EcoO109I RGGNCCY 1 cut(s) 39
EcoT22I ATGCAT 1 cut(s) 124
EgeI GGCGCC 1 cut(s) 496
EheI GGCGCC 1 cut(s) 496
FaiI YATR 5 cut(s) 69, 118, 120, 124, 212
FaqI GGGAC 4 cut(s) 119, 128, 231, 240
FauI CCCGC 2 cut(s) 355, 443
Fnu4HI GCNGC 1 cut(s) 466
Fsp4HI GCNGC 1 cut(s) 466
FspBI CTAG 1 cut(s) 359
GlaI GCGC 2 cut(s) 409, 496
GluI GCNGC 1 cut(s) 466
HaeII RGCGCY 2 cut(s) 411, 498
HaeIII GGCC 1 cut(s) 279
HapII CCGG 3 cut(s) 146, 243, 280
HhaI GCGC 2 cut(s) 410, 497
Hin1I GRCGYC 1 cut(s) 495
Hin6I GCGC 2 cut(s) 408, 495
HinP1I GCGC 2 cut(s) 408, 495
HinfI GANTC 2 cut(s) 82, 270
HpaII CCGG 3 cut(s) 146, 243, 280
HphI GGTGA 3 cut(s) 296, 392, 485
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 2 cut(s) 193, 545
Hpy188III TCNNGA 6 cut(s) 14, 110, 151, 324, 438, 510
Hpy8I GTNNAC 1 cut(s) 105
HpyAV CCTTC 1 cut(s) 377
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 3 cut(s) 105, 122, 199
HpyF10VI GCNNNNNNNGC 1 cut(s) 501
HpySE526I ACGT 1 cut(s) 217
Hsp92I GRCGYC 1 cut(s) 495
HspAI GCGC 2 cut(s) 408, 495
KasI GGCGCC 1 cut(s) 494
Kzo9I GATC 2 cut(s) 3, 291
LmnI GCTCC 1 cut(s) 51
LpnPI CCDG 3 cut(s) 159, 256, 293
LweI GCATC 1 cut(s) 349
MaeI CTAG 1 cut(s) 359
MaeII ACGT 1 cut(s) 217
MalI GATC 2 cut(s) 5, 293
MboI GATC 2 cut(s) 3, 291
MboII GAAGA 2 cut(s) 456, 522
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 1 cut(s) 327
Mly113I GGCGCC 1 cut(s) 495
MlyI GAGTC 2 cut(s) 91, 279
Mph1103I ATGCAT 1 cut(s) 124
MspA1I CMGCKG 1 cut(s) 468
MspI CCGG 3 cut(s) 146, 243, 280
MspR9I CCNGG 3 cut(s) 146, 243, 281
MvnI CGCG 2 cut(s) 325, 396
MwoI GCNNNNNNNGC 1 cut(s) 501
NarI GGCGCC 1 cut(s) 495
NciI CCSGG 3 cut(s) 146, 243, 281
NdeII GATC 2 cut(s) 3, 291
NheI GCTAGC 1 cut(s) 358
NlaIV GGNNCC 5 cut(s) 12, 41, 247, 367, 496
NruI TCGCGA 1 cut(s) 325
NsiI ATGCAT 1 cut(s) 124
PaeR7I CTCGAG 1 cut(s) 438
PcsI WCGNNNNNNNCGW 2 cut(s) 12, 495
PkrI GCNGC 1 cut(s) 467
PleI GAGTC 2 cut(s) 90, 278
PluTI GGCGCC 1 cut(s) 498
PmaCI CACGTG 1 cut(s) 218
PmlI CACGTG 1 cut(s) 218
PpsI GAGTC 2 cut(s) 90, 278
Ppu21I YACGTR 1 cut(s) 218
PpuMI RGGWCCY 1 cut(s) 39
Psp5II RGGWCCY 1 cut(s) 39
PspCI CACGTG 1 cut(s) 218
PspN4I GGNNCC 5 cut(s) 12, 41, 247, 367, 496
PspPI GGNCC 3 cut(s) 39, 245, 277
PspPPI RGGWCCY 1 cut(s) 39
RruI TCGCGA 1 cut(s) 325
RsaI GTAC 2 cut(s) 229, 481
RsaNI GTAC 2 cut(s) 228, 480
SatI GCNGC 1 cut(s) 466
Sau3AI GATC 2 cut(s) 3, 291
Sau96I GGNCC 3 cut(s) 39, 245, 277
SchI GAGTC 2 cut(s) 91, 279
ScrFI CCNGG 3 cut(s) 146, 243, 281
SduI GDGCHC 1 cut(s) 107
SetI ASST 6 cut(s) 56, 117, 220, 382, 424, 520
SfaNI GCATC 1 cut(s) 349
SfoI GGCGCC 1 cut(s) 496
Sfr274I CTCGAG 1 cut(s) 438
SinI GGWCC 2 cut(s) 39, 245
SlaI CTCGAG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 438
SmoI CTYRAG 1 cut(s) 438
Sse9I AATT 1 cut(s) 327
SsiI CCGC 5 cut(s) 351, 362, 396, 450, 466
SspDI GGCGCC 1 cut(s) 494
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 3 cut(s) 144, 241, 279
TaiI ACGT 1 cut(s) 220
TaqI TCGA 3 cut(s) 94, 150, 439
TasI AATT 1 cut(s) 327
TatI WGTACW 1 cut(s) 227
TauI GCSGC 1 cut(s) 468
VneI GTGCAC 1 cut(s) 103
VpaK11BI GGWCC 2 cut(s) 39, 245
XapI RAATTY 1 cut(s) 327
XhoI CTCGAG 1 cut(s) 438
XspI CTAG 1 cut(s) 359
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.