Rh5DG192000

Mitochondrial inner membrane protease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000640
Physical Location & Seq
Forward (+)
21399412 .. 21405947
6536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG192000.1

Sequence Viewer

Length: 306 bp
ATGGTGAAGTTTATGCTGGAGCATCTGGAGAAATCTGGGTGTGGGATATTAGACTGGTCTTGCTGGGCCGTTCATTGCGAGAAGAAGATTGCCGGAGTATACACCCGCCTCGGATGGATTCGTGTTGGCCATCTTAGTGGTGATTGCCACTGTAAACGTGAATTTTTGCTGTGCCAAGAAGATTCGAGAATTGTGAACAAATTCCAGGCAGAAACAGGGTCTCCATGCATAGCAGCCCACATTTTCAGGATTGAAGGAGCGTCCCAAGAGGTAGTCATGAGCTTTATTCCAAAGAGGTATTCATAG

Protein Analysis

101

Amino Acids

11.52

Weight (kDa)

8.2

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000640)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0331021 RchiOBHm_Chr1g0335951 RchiOBHm_Chr1g0338001 RchiOBHm_Chr6g0276241 RchiOBHm_Chr6g0297731 RchiOBHm_Chr7g0188211 RchiOBHm_Chr7g0217921 RchiOBHm_Chr7g0238211
rosa_laevigata RLG00000007457 RLG00000015447 RLG00000019185 RLG00000032916 RLG00000034538
rosa_multiflora Rmu_sc0000923.1_g000008 Rmu_sc0002931.1_g000001 Rmu_sc0006850.1_g000014
rosa_roxburghii Rroxscaffold_1G00021360 Rroxscaffold_1G00022610 Rroxscaffold_1G00022620 Rroxscaffold_1G00025730 Rroxscaffold_1G00029440 Rroxscaffold_1G00029610 Rroxscaffold_1G00032940 Rroxscaffold_1G00034000 Rroxscaffold_2G00087130 Rroxscaffold_2G00093110 Rroxscaffold_2G00097280 Rroxscaffold_2G00121440 Rroxscaffold_3G00225890 Rroxscaffold_3G00238130 Rroxscaffold_3G00241910 Rroxscaffold_3G00267280 Rroxscaffold_4G00295970 Rroxscaffold_4G00299040 Rroxscaffold_4G00303830 Rroxscaffold_4G00305880 Rroxscaffold_5G00335820 Rroxscaffold_5G00343740 Rroxscaffold_5G00346800 Rroxscaffold_5G00348110 Rroxscaffold_5G00371220 Rroxscaffold_5G00383470 Rroxscaffold_5G00387630 Rroxscaffold_6G00388100 Rroxscaffold_6G00395960 Rroxscaffold_6G00397500 Rroxscaffold_6G00405550 Rroxscaffold_7G00195020 Rroxscaffold_7G00217460
rosa_rugosa Rorug02G0515900 Rorug06G0038100.1
rosa_samantha Rh1CG171700 Rh2AG250300 Rh2AG481200 Rh2CG103900 Rh2CG467500 Rh2DG121800 Rh2DG258400 Rh3AG000900 Rh3CG000600 Rh3DG000800 Rh4DG164800 Rh5AG157100 Rh5AG476500 Rh5AG519300 Rh5DG192000 Rh5DG243900 Rh6CG399800 Rh6DG207500 Rh6DG458300 Rh6DG458400 Rh7AG314100 Rh7AG466900 Rh7DG095400
rosa_wichuraiana Rw5G004310 Rw5G049380 Rw6G000590 Rw6G025650

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 99
AciI CCGC 1 cut(s) 106
AcoI YGGCCR 1 cut(s) 127
AcsI RAATTY 2 cut(s) 161, 200
AgsI TTSAA 1 cut(s) 254
AjnI CCWGG 1 cut(s) 204
AjuI GAANNNNNNNTTGG 1 cut(s) 283
AluBI AGCT 1 cut(s) 282
AluI AGCT 1 cut(s) 282
Alw26I GTCTC 1 cut(s) 225
AoxI GGCC 2 cut(s) 66, 127
ApeKI GCWGC 1 cut(s) 233
ApoI RAATTY 2 cut(s) 161, 200
Asp700I GAANNNNTTC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 66
AsuHPI GGTGA 2 cut(s) 16, 152
BalI TGGCCA 1 cut(s) 129
BbvI GCAGC 1 cut(s) 245
BccI CCATC 2 cut(s) 108, 138
BceAI ACGGC 1 cut(s) 53
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 1 cut(s) 225
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 1 cut(s) 31
BpmI CTGGAG 2 cut(s) 38, 47
BsaI GGTCTC 1 cut(s) 225
BsaJI CCNNGG 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bse1I ACTGG 1 cut(s) 59
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 109
BseGI GGATG 1 cut(s) 119
BseMI GCAATG 1 cut(s) 73
BseNI ACTGG 1 cut(s) 59
BseXI GCAGC 1 cut(s) 245
BseYI CCCAGC 1 cut(s) 63
BshFI GGCC 2 cut(s) 68, 129
BsiSI CCGG 1 cut(s) 93
BslFI GGGAC 1 cut(s) 247
BsmAI GTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 2 cut(s) 68, 129
Bso31I GGTCTC 1 cut(s) 225
BspACI CCGC 1 cut(s) 106
BspANI GGCC 2 cut(s) 68, 129
BspHI TCATGA 1 cut(s) 276
BspTNI GGTCTC 1 cut(s) 225
BsrDI GCAATG 1 cut(s) 73
BsrI ACTGG 1 cut(s) 59
BssECI CCNNGG 1 cut(s) 109
BssNAI GTATAC 1 cut(s) 100
Bst1107I GTATAC 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 1 cut(s) 152
BstDEI CTNAG 1 cut(s) 134
BstF5I GGATG 1 cut(s) 119
BstMAI GTCTC 1 cut(s) 225
BstNI CCWGG 1 cut(s) 206
BstSCI CCNGG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 245
BstXI CCANNNNNNTGG 1 cut(s) 137
BstZ17I GTATAC 1 cut(s) 100
BsuRI GGCC 2 cut(s) 68, 129
BtsCI GGATG 1 cut(s) 119
BtsIMutI CAGTG 1 cut(s) 148
CciI TCATGA 1 cut(s) 276
Cfr13I GGNCC 1 cut(s) 66
CseI GACGC 1 cut(s) 249
CviAII CATG 2 cut(s) 225, 277
CviJI RGCY 4 cut(s) 68, 129, 236, 282
CviKI_1 RGCY 4 cut(s) 68, 129, 236, 282
DdeI CTNAG 1 cut(s) 134
EaeI YGGCCR 1 cut(s) 127
Eco31I GGTCTC 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 230
FaeI CATG 2 cut(s) 228, 280
FaiI YATR 6 cut(s) 14, 100, 226, 230, 278, 304
FaqI GGGAC 1 cut(s) 247
FatI CATG 2 cut(s) 224, 276
FauI CCCGC 1 cut(s) 113
FblI GTMKAC 1 cut(s) 99
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 234
GluI GCNGC 1 cut(s) 234
GsaI CCCAGC 1 cut(s) 67
GsuI CTGGAG 2 cut(s) 38, 47
HaeIII GGCC 2 cut(s) 68, 129
HapII CCGG 1 cut(s) 93
HgaI GACGC 1 cut(s) 249
Hin1II CATG 2 cut(s) 228, 280
HinfI GANTC 2 cut(s) 118, 182
HpaII CCGG 1 cut(s) 93
HphI GGTGA 2 cut(s) 16, 152
Hpy166II GTNNAC 3 cut(s) 100, 155, 196
Hpy188I TCNGA 1 cut(s) 113
Hpy188III TCNNGA 4 cut(s) 26, 186, 247, 277
Hpy8I GTNNAC 3 cut(s) 100, 155, 196
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 157
HpyCH4V TGCA 1 cut(s) 228
HpyF3I CTNAG 1 cut(s) 134
HpySE526I ACGT 1 cut(s) 157
Hsp92II CATG 2 cut(s) 228, 280
LmnI GCTCC 2 cut(s) 19, 257
Lsp1109I GCAGC 1 cut(s) 245
LweI GCATC 1 cut(s) 31
MaeII ACGT 1 cut(s) 157
MboII GAAGA 3 cut(s) 94, 97, 191
MlsI TGGCCA 1 cut(s) 129
MluCI AATT 3 cut(s) 161, 189, 200
MluNI TGGCCA 1 cut(s) 129
MnlI CCTC 3 cut(s) 119, 262, 288
Mox20I TGGCCA 1 cut(s) 129
Mph1103I ATGCAT 1 cut(s) 230
MroXI GAANNNNTTC 1 cut(s) 200
MscI TGGCCA 1 cut(s) 129
MslI CAYNNNNRTG 1 cut(s) 135
Msp20I TGGCCA 1 cut(s) 129
MspI CCGG 1 cut(s) 93
MspR9I CCNGG 1 cut(s) 206
MvaI CCWGG 1 cut(s) 206
NlaIII CATG 2 cut(s) 228, 280
NsiI ATGCAT 1 cut(s) 230
PagI TCATGA 1 cut(s) 276
PdmI GAANNNNTTC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 118, 182
PkrI GCNGC 1 cut(s) 235
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 63
PspGI CCWGG 1 cut(s) 204
PspPI GGNCC 1 cut(s) 66
RseI CAYNNNNRTG 1 cut(s) 135
SatI GCNGC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 206
SetI ASST 4 cut(s) 160, 273, 284, 299
SfaNI GCATC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 135
Sse9I AATT 3 cut(s) 161, 189, 200
SsiI CCGC 1 cut(s) 106
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 160
TaqI TCGA 1 cut(s) 185
TasI AATT 3 cut(s) 161, 189, 200
TfiI GAWTC 2 cut(s) 118, 182
TscAI CASTG 1 cut(s) 155
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 62, 291
TspRI CASTG 1 cut(s) 155
XapI RAATTY 2 cut(s) 161, 200
XmiI GTMKAC 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 200
Zsp2I ATGCAT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.