protein modification by small protein conjugation or removal
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 957, 1065 |
| AciI | CCGC | 1 cut(s) | 90 |
| AclWI | GGATC | 3 cut(s) | 462, 829, 842 |
| AcoI | YGGCCR | 1 cut(s) | 91 |
| AcsI | RAATTY | 1 cut(s) | 437 |
| AcvI | CACGTG | 1 cut(s) | 148 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 921, 967 |
| AflIII | ACRYGT | 2 cut(s) | 147, 853 |
| AjnI | CCWGG | 2 cut(s) | 190, 406 |
| AluBI | AGCT | 9 cut(s) | 209, 331, 505, 667, 754, 784, 871, 901, 991 |
| AluI | AGCT | 9 cut(s) | 209, 331, 505, 667, 754, 784, 871, 901, 991 |
| Alw21I | GWGCWC | 1 cut(s) | 211 |
| Alw26I | GTCTC | 5 cut(s) | 78, 600, 717, 834, 954 |
| AlwI | GGATC | 3 cut(s) | 462, 829, 842 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 704, 821 |
| Ama87I | CYCGRG | 4 cut(s) | 632, 714, 951, 965 |
| AoxI | GGCC | 1 cut(s) | 91 |
| ApoI | RAATTY | 1 cut(s) | 437 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 399 |
| AspS9I | GGNCC | 2 cut(s) | 469, 718 |
| AsuHPI | GGTGA | 1 cut(s) | 19 |
| AvaI | CYCGRG | 4 cut(s) | 632, 714, 951, 965 |
| AvaII | GGWCC | 2 cut(s) | 469, 718 |
| BamHI | GGATCC | 1 cut(s) | 834 |
| BanII | GRGCYC | 1 cut(s) | 211 |
| BbrPI | CACGTG | 1 cut(s) | 148 |
| BbsI | GAAGAC | 1 cut(s) | 23 |
| Bbv12I | GWGCWC | 1 cut(s) | 211 |
| BccI | CCATC | 7 cut(s) | 189, 268, 424, 634, 868, 988, 1043 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 1055 |
| BciT130I | CCWGG | 2 cut(s) | 192, 408 |
| BclI | TGATCA | 1 cut(s) | 366 |
| BcoDI | GTCTC | 5 cut(s) | 78, 600, 717, 834, 954 |
| BfaI | CTAG | 3 cut(s) | 611, 728, 845 |
| BisI | GCNGC | 1 cut(s) | 91 |
| BlsI | GCNGC | 1 cut(s) | 92 |
| Bme1390I | CCNGG | 2 cut(s) | 192, 408 |
| Bme18I | GGWCC | 2 cut(s) | 469, 718 |
| BmeT110I | CYCGRG | 4 cut(s) | 632, 714, 951, 965 |
| BmgT120I | GGNCC | 2 cut(s) | 469, 718 |
| BmiI | GGNNCC | 4 cut(s) | 470, 602, 719, 836 |
| BmrFI | CCNGG | 2 cut(s) | 192, 408 |
| BmrI | ACTGGG | 1 cut(s) | 429 |
| BmsI | GCATC | 4 cut(s) | 574, 691, 808, 928 |
| BmuI | ACTGGG | 1 cut(s) | 429 |
| BpiI | GAAGAC | 1 cut(s) | 23 |
| BpuEI | CTTGAG | 8 cut(s) | 608, 689, 725, 770, 806, 887, 923, 1007 |
| BsaAI | YACGTR | 1 cut(s) | 148 |
| BsaI | GGTCTC | 4 cut(s) | 78, 717, 834, 954 |
| BsaJI | CCNNGG | 1 cut(s) | 915 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 921, 967 |
| Bse1I | ACTGG | 2 cut(s) | 424, 1023 |
| BseBI | CCWGG | 2 cut(s) | 192, 408 |
| BseDI | CCNNGG | 1 cut(s) | 915 |
| BseGI | GGATG | 2 cut(s) | 200, 403 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 921, 967 |
| BseMII | CTCAG | 1 cut(s) | 279 |
| BseNI | ACTGG | 2 cut(s) | 424, 1023 |
| BseRI | GAGGAG | 1 cut(s) | 920 |
| BsgI | GTGCAG | 2 cut(s) | 146, 268 |
| BshFI | GGCC | 1 cut(s) | 93 |
| BsiHKAI | GWGCWC | 1 cut(s) | 211 |
| BsiHKCI | CYCGRG | 4 cut(s) | 632, 714, 951, 965 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 921, 967 |
| BsmAI | GTCTC | 5 cut(s) | 78, 600, 717, 834, 954 |
| BsmI | GAATGC | 1 cut(s) | 977 |
| BsnI | GGCC | 1 cut(s) | 93 |
| Bso31I | GGTCTC | 4 cut(s) | 78, 717, 834, 954 |
| BsoBI | CYCGRG | 4 cut(s) | 632, 714, 951, 965 |
| Bsp1286I | GDGCHC | 1 cut(s) | 211 |
| Bsp143I | GATC | 4 cut(s) | 142, 366, 454, 834 |
| BspACI | CCGC | 1 cut(s) | 90 |
| BspANI | GGCC | 1 cut(s) | 93 |
| BspCNI | CTCAG | 1 cut(s) | 280 |
| BspHI | TCATGA | 1 cut(s) | 550 |
| BspLI | GGNNCC | 4 cut(s) | 470, 602, 719, 836 |
| BspPI | GGATC | 3 cut(s) | 462, 829, 842 |
| BspTNI | GGTCTC | 4 cut(s) | 78, 717, 834, 954 |
| BsrI | ACTGG | 2 cut(s) | 424, 1023 |
| BssECI | CCNNGG | 1 cut(s) | 915 |
| BssMI | GATC | 4 cut(s) | 142, 366, 454, 834 |
| BssT1I | CCWWGG | 1 cut(s) | 915 |
| Bst2UI | CCWGG | 2 cut(s) | 192, 408 |
| Bst4CI | ACNGT | 4 cut(s) | 376, 533, 653, 770 |
| BstBAI | YACGTR | 1 cut(s) | 148 |
| BstDEI | CTNAG | 1 cut(s) | 288 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 919 |
| BstF5I | GGATG | 2 cut(s) | 200, 403 |
| BstKTI | GATC | 4 cut(s) | 145, 369, 457, 837 |
| BstMAI | GTCTC | 5 cut(s) | 78, 600, 717, 834, 954 |
| BstMBI | GATC | 4 cut(s) | 142, 366, 454, 834 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 96 |
| BstNI | CCWGG | 2 cut(s) | 192, 408 |
| BstSCI | CCNGG | 2 cut(s) | 190, 406 |
| BstV2I | GAAGAC | 1 cut(s) | 23 |
| BstX2I | RGATCY | 2 cut(s) | 454, 834 |
| BstYI | RGATCY | 2 cut(s) | 454, 834 |
| BsuRI | GGCC | 1 cut(s) | 93 |
| BtsCI | GGATG | 2 cut(s) | 200, 403 |
| BtsIMutI | CAGTG | 1 cut(s) | 285 |
| CaiI | CAGNNNCTG | 2 cut(s) | 704, 821 |
| CciI | TCATGA | 1 cut(s) | 550 |
| Cfr13I | GGNCC | 2 cut(s) | 469, 718 |
| CviAII | CATG | 3 cut(s) | 270, 520, 551 |
| DdeI | CTNAG | 1 cut(s) | 288 |
| DpnI | GATC | 4 cut(s) | 144, 368, 456, 836 |
| DpnII | GATC | 4 cut(s) | 142, 366, 454, 834 |
| EaeI | YGGCCR | 1 cut(s) | 91 |
| Ecl136II | GAGCTC | 1 cut(s) | 209 |
| Eco130I | CCWWGG | 1 cut(s) | 915 |
| Eco24I | GRGCYC | 1 cut(s) | 211 |
| Eco31I | GGTCTC | 4 cut(s) | 78, 717, 834, 954 |
| Eco47I | GGWCC | 2 cut(s) | 469, 718 |
| Eco53kI | GAGCTC | 1 cut(s) | 209 |
| Eco72I | CACGTG | 1 cut(s) | 148 |
| Eco88I | CYCGRG | 4 cut(s) | 632, 714, 951, 965 |
| EcoICRI | GAGCTC | 1 cut(s) | 209 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 919 |
| EcoRI | GAATTC | 1 cut(s) | 437 |
| EcoRII | CCWGG | 2 cut(s) | 190, 406 |
| EcoT14I | CCWWGG | 1 cut(s) | 915 |
| EcoT38I | GRGCYC | 1 cut(s) | 211 |
| ErhI | CCWWGG | 1 cut(s) | 915 |
| FaeI | CATG | 3 cut(s) | 273, 523, 554 |
| FaiI | YATR | 8 cut(s) | 70, 80, 86, 271, 515, 521, 552, 945 |
| FatI | CATG | 3 cut(s) | 269, 519, 550 |
| FbaI | TGATCA | 1 cut(s) | 366 |
| FblI | GTMKAC | 2 cut(s) | 957, 1065 |
| Fnu4HI | GCNGC | 1 cut(s) | 91 |
| FokI | GGATG | 2 cut(s) | 207, 390 |
| FriOI | GRGCYC | 1 cut(s) | 211 |
| Fsp4HI | GCNGC | 1 cut(s) | 91 |
| FspBI | CTAG | 3 cut(s) | 611, 728, 845 |
| GluI | GCNGC | 1 cut(s) | 91 |
| HaeIII | GGCC | 1 cut(s) | 93 |
| Hin1II | CATG | 3 cut(s) | 273, 523, 554 |
| HincII | GTYRAC | 2 cut(s) | 417, 1066 |
| HindII | GTYRAC | 2 cut(s) | 417, 1066 |
| HindIII | AAGCTT | 4 cut(s) | 329, 665, 782, 899 |
| HinfI | GANTC | 7 cut(s) | 7, 172, 223, 266, 593, 628, 745 |
| HpaI | GTTAAC | 1 cut(s) | 417 |
| HphI | GGTGA | 1 cut(s) | 19 |
| Hpy166II | GTNNAC | 3 cut(s) | 417, 958, 1066 |
| Hpy188I | TCNGA | 6 cut(s) | 15, 52, 123, 265, 834, 934 |
| Hpy188III | TCNNGA | 6 cut(s) | 551, 625, 632, 742, 749, 979 |
| Hpy8I | GTNNAC | 3 cut(s) | 417, 958, 1066 |
| Hpy99I | CGWCG | 1 cut(s) | 1070 |
| HpyAV | CCTTC | 3 cut(s) | 335, 418, 559 |
| HpyCH4III | ACNGT | 4 cut(s) | 376, 533, 653, 770 |
| HpyCH4IV | ACGT | 3 cut(s) | 147, 165, 853 |
| HpyCH4V | TGCA | 2 cut(s) | 163, 285 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 96 |
| HpyF3I | CTNAG | 1 cut(s) | 288 |
| HpySE526I | ACGT | 3 cut(s) | 147, 165, 853 |
| Hsp92II | CATG | 3 cut(s) | 273, 523, 554 |
| Ksp22I | TGATCA | 1 cut(s) | 366 |
| KspAI | GTTAAC | 1 cut(s) | 417 |
| Kzo9I | GATC | 4 cut(s) | 142, 366, 454, 834 |
| LpnPI | CCDG | 9 cut(s) | 177, 204, 225, 393, 405, 420, 437, 512, 1004 |
| LweI | GCATC | 4 cut(s) | 574, 691, 808, 928 |
| MaeI | CTAG | 3 cut(s) | 611, 728, 845 |
| MaeII | ACGT | 3 cut(s) | 147, 165, 853 |
| MalI | GATC | 4 cut(s) | 144, 368, 456, 836 |
| MboI | GATC | 4 cut(s) | 142, 366, 454, 834 |
| MboII | GAAGA | 3 cut(s) | 28, 350, 937 |
| MflI | RGATCY | 2 cut(s) | 454, 834 |
| MhlI | GDGCHC | 1 cut(s) | 211 |
| MluCI | AATT | 4 cut(s) | 437, 446, 496, 878 |
| MlyI | GAGTC | 1 cut(s) | 602 |
| MmeI | TCCRAC | 5 cut(s) | 496, 627, 745, 862, 981 |
| MroXI | GAANNNNTTC | 1 cut(s) | 399 |
| MseI | TTAA | 6 cut(s) | 111, 333, 416, 492, 858, 1078 |
| MslI | CAYNNNNRTG | 1 cut(s) | 374 |
| MspR9I | CCNGG | 2 cut(s) | 192, 408 |
| Mva1269I | GAATGC | 1 cut(s) | 977 |
| MvaI | CCWGG | 2 cut(s) | 192, 408 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 96 |
| NdeII | GATC | 4 cut(s) | 142, 366, 454, 834 |
| NlaIII | CATG | 3 cut(s) | 273, 523, 554 |
| NlaIV | GGNNCC | 4 cut(s) | 470, 602, 719, 836 |
| PaeR7I | CTCGAG | 2 cut(s) | 632, 965 |
| PagI | TCATGA | 1 cut(s) | 550 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 721, 838 |
| PctI | GAATGC | 1 cut(s) | 977 |
| PdmI | GAANNNNTTC | 1 cut(s) | 399 |
| PfeI | GAWTC | 6 cut(s) | 7, 172, 223, 266, 628, 745 |
| PfoI | TCCNGGA | 1 cut(s) | 406 |
| PkrI | GCNGC | 1 cut(s) | 92 |
| PleI | GAGTC | 1 cut(s) | 601 |
| PmaCI | CACGTG | 1 cut(s) | 148 |
| PmlI | CACGTG | 1 cut(s) | 148 |
| PpsI | GAGTC | 1 cut(s) | 601 |
| Ppu21I | YACGTR | 1 cut(s) | 148 |
| Psp124BI | GAGCTC | 1 cut(s) | 211 |
| Psp6I | CCWGG | 2 cut(s) | 190, 406 |
| PspCI | CACGTG | 1 cut(s) | 148 |
| PspGI | CCWGG | 2 cut(s) | 190, 406 |
| PspN4I | GGNNCC | 4 cut(s) | 470, 602, 719, 836 |
| PspPI | GGNCC | 2 cut(s) | 469, 718 |
| PspXI | VCTCGAGB | 1 cut(s) | 965 |
| PstNI | CAGNNNCTG | 2 cut(s) | 704, 821 |
| PsuI | RGATCY | 2 cut(s) | 454, 834 |
| RseI | CAYNNNNRTG | 1 cut(s) | 374 |
| SacI | GAGCTC | 1 cut(s) | 211 |
| SalI | GTCGAC | 1 cut(s) | 1064 |
| SaqAI | TTAA | 6 cut(s) | 111, 333, 416, 492, 858, 1078 |
| SatI | GCNGC | 1 cut(s) | 91 |
| Sau3AI | GATC | 4 cut(s) | 142, 366, 454, 834 |
| Sau96I | GGNCC | 2 cut(s) | 469, 718 |
| SchI | GAGTC | 1 cut(s) | 602 |
| ScrFI | CCNGG | 2 cut(s) | 192, 408 |
| SduI | GDGCHC | 1 cut(s) | 211 |
| SfaNI | GCATC | 4 cut(s) | 574, 691, 808, 928 |
| Sfr274I | CTCGAG | 2 cut(s) | 632, 965 |
| SinI | GGWCC | 2 cut(s) | 469, 718 |
| SlaI | CTCGAG | 2 cut(s) | 632, 965 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 374 |
| Sse9I | AATT | 4 cut(s) | 437, 446, 496, 878 |
| SsiI | CCGC | 1 cut(s) | 90 |
| SspI | AATATT | 2 cut(s) | 62, 315 |
| SspMI | CTAG | 3 cut(s) | 611, 728, 845 |
| SstI | GAGCTC | 1 cut(s) | 211 |
| StyD4I | CCNGG | 2 cut(s) | 190, 406 |
| StyI | CCWWGG | 1 cut(s) | 915 |
| TaaI | ACNGT | 4 cut(s) | 376, 533, 653, 770 |
| TaiI | ACGT | 3 cut(s) | 150, 168, 856 |
| TaqI | TCGA | 6 cut(s) | 299, 633, 680, 797, 966, 1065 |
| TasI | AATT | 4 cut(s) | 437, 446, 496, 878 |
| TauI | GCSGC | 1 cut(s) | 93 |
| TfiI | GAWTC | 6 cut(s) | 7, 172, 223, 266, 628, 745 |
| Tru1I | TTAA | 6 cut(s) | 111, 333, 416, 492, 858, 1078 |
| Tru9I | TTAA | 6 cut(s) | 111, 333, 416, 492, 858, 1078 |
| TscAI | CASTG | 1 cut(s) | 292 |
| TspDTI | ATGAA | 6 cut(s) | 73, 207, 258, 392, 524, 536 |
| TspRI | CASTG | 1 cut(s) | 292 |
| VpaK11BI | GGWCC | 2 cut(s) | 469, 718 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 919 |
| XapI | RAATTY | 1 cut(s) | 437 |
| XhoI | CTCGAG | 2 cut(s) | 632, 965 |
| XmiI | GTMKAC | 2 cut(s) | 957, 1065 |
| XmnI | GAANNNNTTC | 1 cut(s) | 399 |
| XspI | CTAG | 3 cut(s) | 611, 728, 845 |