isoform X1
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 305 |
| Acc36I | ACCTGC | 1 cut(s) | 305 |
| AccIII | TCCGGA | 1 cut(s) | 1441 |
| AciI | CCGC | 1 cut(s) | 1393 |
| AclWI | GGATC | 2 cut(s) | 185, 805 |
| AcsI | RAATTY | 3 cut(s) | 221, 1118, 1383 |
| AcuI | CTGAAG | 4 cut(s) | 561, 741, 945, 1506 |
| AfaI | GTAC | 3 cut(s) | 566, 1354, 1563 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 347 |
| AflII | CTTAAG | 1 cut(s) | 602 |
| AflIII | ACRYGT | 3 cut(s) | 561, 1239, 1320 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1534 |
| AjnI | CCWGG | 1 cut(s) | 15 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 50, 82 |
| AleI | CACNNNNGTG | 1 cut(s) | 407 |
| AluBI | AGCT | 8 cut(s) | 86, 125, 358, 623, 719, 1228, 1307, 1505 |
| AluI | AGCT | 8 cut(s) | 86, 125, 358, 623, 719, 1228, 1307, 1505 |
| Alw21I | GWGCWC | 5 cut(s) | 127, 653, 1252, 1316, 1462 |
| Alw26I | GTCTC | 3 cut(s) | 769, 820, 1322 |
| Alw44I | GTGCAC | 3 cut(s) | 649, 1248, 1312 |
| AlwI | GGATC | 2 cut(s) | 185, 805 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1331 |
| Aor13HI | TCCGGA | 1 cut(s) | 1441 |
| ApaLI | GTGCAC | 3 cut(s) | 649, 1248, 1312 |
| ApeKI | GCWGC | 7 cut(s) | 12, 265, 268, 352, 355, 623, 634 |
| ApoI | RAATTY | 3 cut(s) | 221, 1118, 1383 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 975 |
| BaeGI | GKGCMC | 3 cut(s) | 653, 1252, 1316 |
| BanII | GRGCYC | 1 cut(s) | 127 |
| BbsI | GAAGAC | 5 cut(s) | 465, 933, 1145, 1242, 1333 |
| Bbv12I | GWGCWC | 5 cut(s) | 127, 653, 1252, 1316, 1462 |
| BbvCI | CCTCAGC | 1 cut(s) | 146 |
| BbvI | GCAGC | 7 cut(s) | 24, 277, 280, 364, 367, 610, 621 |
| BccI | CCATC | 5 cut(s) | 622, 737, 1330, 1343, 1561 |
| BciT130I | CCWGG | 1 cut(s) | 17 |
| BciVI | GTATCC | 1 cut(s) | 651 |
| BclI | TGATCA | 1 cut(s) | 915 |
| BcoDI | GTCTC | 3 cut(s) | 769, 820, 1322 |
| BfaI | CTAG | 5 cut(s) | 9, 654, 1229, 1280, 1308 |
| BfmI | CTRYAG | 2 cut(s) | 302, 435 |
| BfrI | CTTAAG | 1 cut(s) | 602 |
| BfuAI | ACCTGC | 1 cut(s) | 305 |
| BfuI | GTATCC | 1 cut(s) | 651 |
| BisI | GCNGC | 7 cut(s) | 13, 266, 269, 353, 356, 624, 635 |
| BlsI | GCNGC | 7 cut(s) | 14, 267, 270, 354, 357, 625, 636 |
| Bme1390I | CCNGG | 1 cut(s) | 17 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1534 |
| BmrFI | CCNGG | 1 cut(s) | 17 |
| BmsI | GCATC | 1 cut(s) | 1059 |
| BpiI | GAAGAC | 5 cut(s) | 465, 933, 1145, 1242, 1333 |
| BpmI | CTGGAG | 3 cut(s) | 56, 330, 535 |
| Bpu10I | CCTNAGC | 1 cut(s) | 146 |
| BsaBI | GATNNNNATC | 2 cut(s) | 336, 613 |
| BsaWI | WCCGGW | 1 cut(s) | 1441 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1097, 1127 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 347 |
| Bse1I | ACTGG | 2 cut(s) | 39, 503 |
| Bse3DI | GCAATG | 1 cut(s) | 52 |
| Bse8I | GATNNNNATC | 2 cut(s) | 336, 613 |
| BseAI | TCCGGA | 1 cut(s) | 1441 |
| BseBI | CCWGG | 1 cut(s) | 17 |
| BseGI | GGATG | 5 cut(s) | 220, 244, 748, 906, 1074 |
| BseJI | GATNNNNATC | 2 cut(s) | 336, 613 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 347 |
| BseMI | GCAATG | 1 cut(s) | 52 |
| BseMII | CTCAG | 4 cut(s) | 137, 249, 509, 1497 |
| BseNI | ACTGG | 2 cut(s) | 39, 503 |
| BseRI | GAGGAG | 3 cut(s) | 122, 163, 1123 |
| BseSI | GKGCMC | 3 cut(s) | 653, 1252, 1316 |
| BseXI | GCAGC | 7 cut(s) | 24, 277, 280, 364, 367, 610, 621 |
| BsgI | GTGCAG | 2 cut(s) | 284, 431 |
| BsiHKAI | GWGCWC | 5 cut(s) | 127, 653, 1252, 1316, 1462 |
| BsiSI | CCGG | 1 cut(s) | 1442 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 347 |
| BsmAI | GTCTC | 3 cut(s) | 769, 820, 1322 |
| BsmI | GAATGC | 2 cut(s) | 455, 1039 |
| Bsp1286I | GDGCHC | 5 cut(s) | 127, 653, 1252, 1316, 1462 |
| Bsp13I | TCCGGA | 1 cut(s) | 1441 |
| Bsp143I | GATC | 4 cut(s) | 177, 608, 797, 915 |
| BspACI | CCGC | 1 cut(s) | 1393 |
| BspCNI | CTCAG | 4 cut(s) | 138, 250, 510, 1498 |
| BspEI | TCCGGA | 1 cut(s) | 1441 |
| BspHI | TCATGA | 1 cut(s) | 918 |
| BspMAI | CTGCAG | 1 cut(s) | 439 |
| BspMI | ACCTGC | 1 cut(s) | 305 |
| BspPI | GGATC | 2 cut(s) | 185, 805 |
| BspTI | CTTAAG | 1 cut(s) | 602 |
| BsrDI | GCAATG | 1 cut(s) | 52 |
| BsrI | ACTGG | 2 cut(s) | 39, 503 |
| BssMI | GATC | 4 cut(s) | 177, 608, 797, 915 |
| Bst2UI | CCWGG | 1 cut(s) | 17 |
| Bst4CI | ACNGT | 3 cut(s) | 735, 753, 1333 |
| Bst6I | CTCTTC | 2 cut(s) | 167, 471 |
| BstAFI | CTTAAG | 1 cut(s) | 602 |
| BstC8I | GCNNGC | 3 cut(s) | 185, 273, 1391 |
| BstDEI | CTNAG | 6 cut(s) | 146, 258, 345, 518, 883, 1506 |
| BstF5I | GGATG | 5 cut(s) | 220, 244, 748, 906, 1074 |
| BstKTI | GATC | 4 cut(s) | 180, 611, 800, 918 |
| BstMAI | GTCTC | 3 cut(s) | 769, 820, 1322 |
| BstMBI | GATC | 4 cut(s) | 177, 608, 797, 915 |
| BstNI | CCWGG | 1 cut(s) | 17 |
| BstNSI | RCATGY | 6 cut(s) | 187, 275, 565, 1243, 1324, 1393 |
| BstSCI | CCNGG | 1 cut(s) | 15 |
| BstSFI | CTRYAG | 2 cut(s) | 302, 435 |
| BstSLI | GKGCMC | 3 cut(s) | 653, 1252, 1316 |
| BstV1I | GCAGC | 7 cut(s) | 24, 277, 280, 364, 367, 610, 621 |
| BstV2I | GAAGAC | 5 cut(s) | 465, 933, 1145, 1242, 1333 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1045 |
| BsuI | GTATCC | 1 cut(s) | 651 |
| BtsCI | GGATG | 5 cut(s) | 220, 244, 748, 906, 1074 |
| BtsI | GCAGTG | 3 cut(s) | 444, 889, 1062 |
| BtsIMutI | CAGTG | 6 cut(s) | 402, 444, 510, 828, 889, 1062 |
| BveI | ACCTGC | 1 cut(s) | 305 |
| Cac8I | GCNNGC | 3 cut(s) | 185, 273, 1391 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1331 |
| CciI | TCATGA | 1 cut(s) | 918 |
| Csp6I | GTAC | 3 cut(s) | 565, 1353, 1562 |
| CviQI | GTAC | 3 cut(s) | 565, 1353, 1562 |
| DdeI | CTNAG | 6 cut(s) | 146, 258, 345, 518, 883, 1506 |
| DpnI | GATC | 4 cut(s) | 179, 610, 799, 917 |
| DpnII | GATC | 4 cut(s) | 177, 608, 797, 915 |
| DraI | TTTAAA | 1 cut(s) | 90 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1534 |
| Eam1104I | CTCTTC | 2 cut(s) | 167, 471 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1534 |
| EarI | CTCTTC | 2 cut(s) | 167, 471 |
| Ecl136II | GAGCTC | 1 cut(s) | 125 |
| Eco24I | GRGCYC | 1 cut(s) | 127 |
| Eco53kI | GAGCTC | 1 cut(s) | 125 |
| Eco57I | CTGAAG | 4 cut(s) | 561, 741, 945, 1506 |
| EcoICRI | GAGCTC | 1 cut(s) | 125 |
| EcoRII | CCWGG | 1 cut(s) | 15 |
| EcoT38I | GRGCYC | 1 cut(s) | 127 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1400, 1432 |
| FbaI | TGATCA | 1 cut(s) | 915 |
| Fnu4HI | GCNGC | 7 cut(s) | 13, 266, 269, 353, 356, 624, 635 |
| FokI | GGATG | 5 cut(s) | 227, 251, 755, 893, 1081 |
| FriOI | GRGCYC | 1 cut(s) | 127 |
| Fsp4HI | GCNGC | 7 cut(s) | 13, 266, 269, 353, 356, 624, 635 |
| FspBI | CTAG | 5 cut(s) | 9, 654, 1229, 1280, 1308 |
| GluI | GCNGC | 7 cut(s) | 13, 266, 269, 353, 356, 624, 635 |
| GsuI | CTGGAG | 3 cut(s) | 56, 330, 535 |
| HapII | CCGG | 1 cut(s) | 1442 |
| HincII | GTYRAC | 1 cut(s) | 1528 |
| HindII | GTYRAC | 1 cut(s) | 1528 |
| HindIII | AAGCTT | 1 cut(s) | 84 |
| HinfI | GANTC | 9 cut(s) | 154, 281, 548, 642, 818, 877, 929, 976, 1466 |
| HpaII | CCGG | 1 cut(s) | 1442 |
| Hpy166II | GTNNAC | 5 cut(s) | 400, 651, 1250, 1314, 1528 |
| Hpy188I | TCNGA | 7 cut(s) | 286, 580, 1127, 1297, 1327, 1471, 1544 |
| Hpy188III | TCNNGA | 5 cut(s) | 919, 1010, 1442, 1463, 1557 |
| Hpy8I | GTNNAC | 5 cut(s) | 400, 651, 1250, 1314, 1528 |
| HpyAV | CCTTC | 8 cut(s) | 52, 113, 322, 585, 788, 955, 1448, 1461 |
| HpyCH4III | ACNGT | 3 cut(s) | 735, 753, 1333 |
| HpyCH4IV | ACGT | 1 cut(s) | 1064 |
| HpyF3I | CTNAG | 6 cut(s) | 146, 258, 345, 518, 883, 1506 |
| HpySE526I | ACGT | 1 cut(s) | 1064 |
| Kpn2I | TCCGGA | 1 cut(s) | 1441 |
| Ksp22I | TGATCA | 1 cut(s) | 915 |
| Kzo9I | GATC | 4 cut(s) | 177, 608, 797, 915 |
| LmnI | GCTCC | 2 cut(s) | 122, 311 |
| Lsp1109I | GCAGC | 7 cut(s) | 24, 277, 280, 364, 367, 610, 621 |
| LweI | GCATC | 1 cut(s) | 1059 |
| MaeI | CTAG | 5 cut(s) | 9, 654, 1229, 1280, 1308 |
| MaeII | ACGT | 1 cut(s) | 1064 |
| MaeIII | GTNAC | 1 cut(s) | 1057 |
| MalI | GATC | 4 cut(s) | 179, 610, 799, 917 |
| MboI | GATC | 4 cut(s) | 177, 608, 797, 915 |
| MhlI | GDGCHC | 5 cut(s) | 127, 653, 1252, 1316, 1462 |
| MluCI | AATT | 7 cut(s) | 112, 221, 369, 693, 1118, 1264, 1383 |
| MlyI | GAGTC | 4 cut(s) | 542, 651, 871, 923 |
| MmeI | TCCRAC | 1 cut(s) | 48 |
| MroI | TCCGGA | 1 cut(s) | 1441 |
| MroXI | GAANNNNTTC | 1 cut(s) | 975 |
| MseI | TTAA | 6 cut(s) | 89, 603, 1115, 1223, 1398, 1512 |
| MslI | CAYNNNNRTG | 2 cut(s) | 407, 1319 |
| MspCI | CTTAAG | 1 cut(s) | 602 |
| MspI | CCGG | 1 cut(s) | 1442 |
| MspR9I | CCNGG | 1 cut(s) | 17 |
| Mva1269I | GAATGC | 2 cut(s) | 455, 1039 |
| MvaI | CCWGG | 1 cut(s) | 17 |
| NdeII | GATC | 4 cut(s) | 177, 608, 797, 915 |
| NmuCI | GTSAC | 1 cut(s) | 1057 |
| NspI | RCATGY | 6 cut(s) | 187, 275, 565, 1243, 1324, 1393 |
| OliI | CACNNNNGTG | 1 cut(s) | 407 |
| PaeI | GCATGC | 3 cut(s) | 187, 275, 1393 |
| PagI | TCATGA | 1 cut(s) | 918 |
| PaqCI | CACCTGC | 1 cut(s) | 305 |
| PciI | ACATGT | 3 cut(s) | 561, 1239, 1320 |
| PctI | GAATGC | 2 cut(s) | 455, 1039 |
| PdmI | GAANNNNTTC | 1 cut(s) | 975 |
| PfeI | GAWTC | 5 cut(s) | 154, 281, 818, 976, 1466 |
| PkrI | GCNGC | 7 cut(s) | 14, 267, 270, 354, 357, 625, 636 |
| PleI | GAGTC | 4 cut(s) | 542, 650, 871, 923 |
| PpsI | GAGTC | 4 cut(s) | 542, 650, 871, 923 |
| PscI | ACATGT | 3 cut(s) | 561, 1239, 1320 |
| Psp124BI | GAGCTC | 1 cut(s) | 127 |
| Psp6I | CCWGG | 1 cut(s) | 15 |
| PspGI | CCWGG | 1 cut(s) | 15 |
| PstI | CTGCAG | 1 cut(s) | 439 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1331 |
| RsaI | GTAC | 3 cut(s) | 566, 1354, 1563 |
| RsaNI | GTAC | 3 cut(s) | 565, 1353, 1562 |
| RseI | CAYNNNNRTG | 2 cut(s) | 407, 1319 |
| SacI | GAGCTC | 1 cut(s) | 127 |
| SaqAI | TTAA | 6 cut(s) | 89, 603, 1115, 1223, 1398, 1512 |
| SatI | GCNGC | 7 cut(s) | 13, 266, 269, 353, 356, 624, 635 |
| Sau3AI | GATC | 4 cut(s) | 177, 608, 797, 915 |
| SchI | GAGTC | 4 cut(s) | 542, 651, 871, 923 |
| ScrFI | CCNGG | 1 cut(s) | 17 |
| SduI | GDGCHC | 5 cut(s) | 127, 653, 1252, 1316, 1462 |
| SfaNI | GCATC | 1 cut(s) | 1059 |
| SfcI | CTRYAG | 2 cut(s) | 302, 435 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 407, 1319 |
| SmlI | CTYRAG | 1 cut(s) | 602 |
| SmoI | CTYRAG | 1 cut(s) | 602 |
| SphI | GCATGC | 3 cut(s) | 187, 275, 1393 |
| Sse9I | AATT | 7 cut(s) | 112, 221, 369, 693, 1118, 1264, 1383 |
| SsiI | CCGC | 1 cut(s) | 1393 |
| SspMI | CTAG | 5 cut(s) | 9, 654, 1229, 1280, 1308 |
| SstI | GAGCTC | 1 cut(s) | 127 |
| StyD4I | CCNGG | 1 cut(s) | 15 |
| TaaI | ACNGT | 3 cut(s) | 735, 753, 1333 |
| TaiI | ACGT | 1 cut(s) | 1067 |
| TaqI | TCGA | 2 cut(s) | 190, 1464 |
| TaqII | GACCGA | 1 cut(s) | 431 |
| TasI | AATT | 7 cut(s) | 112, 221, 369, 693, 1118, 1264, 1383 |
| TatI | WGTACW | 1 cut(s) | 1561 |
| TfiI | GAWTC | 5 cut(s) | 154, 281, 818, 976, 1466 |
| Tru1I | TTAA | 6 cut(s) | 89, 603, 1115, 1223, 1398, 1512 |
| Tru9I | TTAA | 6 cut(s) | 89, 603, 1115, 1223, 1398, 1512 |
| TscAI | CASTG | 6 cut(s) | 409, 444, 510, 828, 896, 1062 |
| TseFI | GTSAC | 1 cut(s) | 1057 |
| TseI | GCWGC | 7 cut(s) | 12, 265, 268, 352, 355, 623, 634 |
| Tsp45I | GTSAC | 1 cut(s) | 1057 |
| TspRI | CASTG | 6 cut(s) | 409, 444, 510, 828, 896, 1062 |
| Vha464I | CTTAAG | 1 cut(s) | 602 |
| VneI | GTGCAC | 3 cut(s) | 649, 1248, 1312 |
| XapI | RAATTY | 3 cut(s) | 221, 1118, 1383 |
| XceI | RCATGY | 6 cut(s) | 187, 275, 565, 1243, 1324, 1393 |
| XmnI | GAANNNNTTC | 1 cut(s) | 975 |
| XspI | CTAG | 5 cut(s) | 9, 654, 1229, 1280, 1308 |