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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 555 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 584 |
| Acc36I | ACCTGC | 1 cut(s) | 555 |
| AciI | CCGC | 1 cut(s) | 608 |
| AcsI | RAATTY | 3 cut(s) | 486, 502, 682 |
| AfaI | GTAC | 1 cut(s) | 537 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 15 |
| AgsI | TTSAA | 3 cut(s) | 49, 373, 493 |
| AjnI | CCWGG | 1 cut(s) | 470 |
| AluBI | AGCT | 4 cut(s) | 221, 262, 629, 709 |
| AluI | AGCT | 4 cut(s) | 221, 262, 629, 709 |
| Alw21I | GWGCWC | 1 cut(s) | 358 |
| Alw44I | GTGCAC | 1 cut(s) | 354 |
| ApaLI | GTGCAC | 1 cut(s) | 354 |
| ApeKI | GCWGC | 1 cut(s) | 709 |
| ApoI | RAATTY | 3 cut(s) | 486, 502, 682 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 296, 328 |
| BaeGI | GKGCMC | 1 cut(s) | 358 |
| BbsI | GAAGAC | 3 cut(s) | 73, 582, 641 |
| Bbv12I | GWGCWC | 1 cut(s) | 358 |
| BbvI | GCAGC | 1 cut(s) | 696 |
| BccI | CCATC | 4 cut(s) | 93, 337, 637, 687 |
| BceAI | ACGGC | 1 cut(s) | 143 |
| BciT130I | CCWGG | 1 cut(s) | 472 |
| BciVI | GTATCC | 2 cut(s) | 186, 445 |
| BclI | TGATCA | 1 cut(s) | 21 |
| BfaI | CTAG | 1 cut(s) | 539 |
| BfuAI | ACCTGC | 1 cut(s) | 555 |
| BfuI | GTATCC | 2 cut(s) | 186, 445 |
| BisI | GCNGC | 2 cut(s) | 608, 710 |
| BlsI | GCNGC | 2 cut(s) | 609, 711 |
| BmcAI | AGTACT | 1 cut(s) | 537 |
| Bme1390I | CCNGG | 1 cut(s) | 472 |
| BmrFI | CCNGG | 1 cut(s) | 472 |
| BmsI | GCATC | 3 cut(s) | 306, 310, 416 |
| BpiI | GAAGAC | 3 cut(s) | 73, 582, 641 |
| BpuEI | CTTGAG | 1 cut(s) | 439 |
| BsaJI | CCNNGG | 2 cut(s) | 229, 380 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 15 |
| Bse1I | ACTGG | 1 cut(s) | 207 |
| BseBI | CCWGG | 1 cut(s) | 472 |
| BseDI | CCNNGG | 2 cut(s) | 229, 380 |
| BseGI | GGATG | 1 cut(s) | 24 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 15 |
| BseMII | CTCAG | 1 cut(s) | 621 |
| BseNI | ACTGG | 1 cut(s) | 207 |
| BseRI | GAGGAG | 1 cut(s) | 663 |
| BseSI | GKGCMC | 1 cut(s) | 358 |
| BseXI | GCAGC | 1 cut(s) | 696 |
| BsgI | GTGCAG | 2 cut(s) | 433, 695 |
| BsiHKAI | GWGCWC | 1 cut(s) | 358 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 15 |
| BsmI | GAATGC | 2 cut(s) | 116, 240 |
| Bsp1286I | GDGCHC | 1 cut(s) | 358 |
| Bsp143I | GATC | 2 cut(s) | 21, 69 |
| BspACI | CCGC | 1 cut(s) | 608 |
| BspCNI | CTCAG | 1 cut(s) | 622 |
| BspHI | TCATGA | 1 cut(s) | 420 |
| BspMI | ACCTGC | 1 cut(s) | 555 |
| BsrI | ACTGG | 1 cut(s) | 207 |
| BssECI | CCNNGG | 2 cut(s) | 229, 380 |
| BssMI | GATC | 2 cut(s) | 21, 69 |
| BssT1I | CCWWGG | 2 cut(s) | 229, 380 |
| Bst2UI | CCWGG | 1 cut(s) | 472 |
| Bst4CI | ACNGT | 1 cut(s) | 353 |
| BstDEI | CTNAG | 4 cut(s) | 137, 532, 560, 630 |
| BstF5I | GGATG | 1 cut(s) | 24 |
| BstKTI | GATC | 2 cut(s) | 24, 72 |
| BstMBI | GATC | 2 cut(s) | 21, 69 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 268 |
| BstNI | CCWGG | 1 cut(s) | 472 |
| BstSCI | CCNGG | 1 cut(s) | 470 |
| BstSLI | GKGCMC | 1 cut(s) | 358 |
| BstV1I | GCAGC | 1 cut(s) | 696 |
| BstV2I | GAAGAC | 3 cut(s) | 73, 582, 641 |
| BsuI | GTATCC | 2 cut(s) | 186, 445 |
| BtgZI | GCGATG | 1 cut(s) | 393 |
| BtsCI | GGATG | 1 cut(s) | 24 |
| BtsIMutI | CAGTG | 2 cut(s) | 214, 358 |
| BveI | ACCTGC | 1 cut(s) | 555 |
| CciI | TCATGA | 1 cut(s) | 420 |
| Csp6I | GTAC | 1 cut(s) | 536 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 384, 419 |
| CviAII | CATG | 3 cut(s) | 421, 522, 616 |
| CviJI | RGCY | 5 cut(s) | 221, 262, 283, 629, 709 |
| CviKI_1 | RGCY | 5 cut(s) | 221, 262, 283, 629, 709 |
| CviQI | GTAC | 1 cut(s) | 536 |
| DdeI | CTNAG | 4 cut(s) | 137, 532, 560, 630 |
| DpnI | GATC | 2 cut(s) | 23, 71 |
| DpnII | GATC | 2 cut(s) | 21, 69 |
| DraI | TTTAAA | 1 cut(s) | 99 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 584 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 584 |
| Eco130I | CCWWGG | 2 cut(s) | 229, 380 |
| EcoRI | GAATTC | 1 cut(s) | 502 |
| EcoRII | CCWGG | 1 cut(s) | 470 |
| EcoT14I | CCWWGG | 2 cut(s) | 229, 380 |
| ErhI | CCWWGG | 2 cut(s) | 229, 380 |
| FaeI | CATG | 3 cut(s) | 424, 525, 619 |
| FaiI | YATR | 7 cut(s) | 78, 154, 422, 523, 552, 617, 689 |
| FatI | CATG | 3 cut(s) | 420, 521, 615 |
| FbaI | TGATCA | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 2 cut(s) | 608, 710 |
| FokI | GGATG | 1 cut(s) | 31 |
| Fsp4HI | GCNGC | 2 cut(s) | 608, 710 |
| FspBI | CTAG | 1 cut(s) | 539 |
| GluI | GCNGC | 2 cut(s) | 608, 710 |
| Hin1II | CATG | 3 cut(s) | 424, 525, 619 |
| HincII | GTYRAC | 1 cut(s) | 349 |
| HindII | GTYRAC | 1 cut(s) | 349 |
| HinfI | GANTC | 5 cut(s) | 249, 292, 365, 385, 424 |
| Hpy166II | GTNNAC | 2 cut(s) | 349, 356 |
| Hpy188I | TCNGA | 1 cut(s) | 168 |
| Hpy188III | TCNNGA | 4 cut(s) | 29, 148, 421, 658 |
| Hpy8I | GTNNAC | 2 cut(s) | 349, 356 |
| Hpy99I | CGWCG | 1 cut(s) | 516 |
| HpyAV | CCTTC | 2 cut(s) | 239, 448 |
| HpyCH4III | ACNGT | 1 cut(s) | 353 |
| HpyCH4V | TGCA | 6 cut(s) | 114, 323, 356, 450, 550, 712 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 268 |
| HpyF3I | CTNAG | 4 cut(s) | 137, 532, 560, 630 |
| Hsp92II | CATG | 3 cut(s) | 424, 525, 619 |
| Ksp22I | TGATCA | 1 cut(s) | 21 |
| Kzo9I | GATC | 2 cut(s) | 21, 69 |
| LmnI | GCTCC | 1 cut(s) | 650 |
| Lsp1109I | GCAGC | 1 cut(s) | 696 |
| LweI | GCATC | 3 cut(s) | 306, 310, 416 |
| MaeI | CTAG | 1 cut(s) | 539 |
| MaeIII | GTNAC | 3 cut(s) | 250, 331, 696 |
| MalI | GATC | 2 cut(s) | 23, 71 |
| MboI | GATC | 2 cut(s) | 21, 69 |
| MboII | GAAGA | 5 cut(s) | 73, 224, 301, 587, 646 |
| MhlI | GDGCHC | 1 cut(s) | 358 |
| MluCI | AATT | 6 cut(s) | 414, 486, 502, 589, 668, 682 |
| MlyI | GAGTC | 2 cut(s) | 258, 433 |
| MnlI | CCTC | 6 cut(s) | 36, 121, 394, 463, 641, 742 |
| MseI | TTAA | 1 cut(s) | 98 |
| MspR9I | CCNGG | 1 cut(s) | 472 |
| Mva1269I | GAATGC | 2 cut(s) | 116, 240 |
| MvaI | CCWGG | 1 cut(s) | 472 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 268 |
| NdeII | GATC | 2 cut(s) | 21, 69 |
| NlaIII | CATG | 3 cut(s) | 424, 525, 619 |
| NmuCI | GTSAC | 3 cut(s) | 250, 331, 696 |
| PagI | TCATGA | 1 cut(s) | 420 |
| PaqCI | CACCTGC | 1 cut(s) | 555 |
| PctI | GAATGC | 2 cut(s) | 116, 240 |
| PfeI | GAWTC | 3 cut(s) | 292, 365, 385 |
| PfoI | TCCNGGA | 1 cut(s) | 470 |
| PkrI | GCNGC | 2 cut(s) | 609, 711 |
| PleI | GAGTC | 2 cut(s) | 257, 432 |
| PpsI | GAGTC | 2 cut(s) | 257, 432 |
| Psp6I | CCWGG | 1 cut(s) | 470 |
| PspGI | CCWGG | 1 cut(s) | 470 |
| RsaI | GTAC | 1 cut(s) | 537 |
| RsaNI | GTAC | 1 cut(s) | 536 |
| SaqAI | TTAA | 1 cut(s) | 98 |
| SatI | GCNGC | 2 cut(s) | 608, 710 |
| Sau3AI | GATC | 2 cut(s) | 21, 69 |
| ScaI | AGTACT | 1 cut(s) | 537 |
| SchI | GAGTC | 2 cut(s) | 258, 433 |
| ScrFI | CCNGG | 1 cut(s) | 472 |
| SduI | GDGCHC | 1 cut(s) | 358 |
| SfaNI | GCATC | 3 cut(s) | 306, 310, 416 |
| SmlI | CTYRAG | 1 cut(s) | 454 |
| SmoI | CTYRAG | 1 cut(s) | 454 |
| Sse9I | AATT | 6 cut(s) | 414, 486, 502, 589, 668, 682 |
| SsiI | CCGC | 1 cut(s) | 608 |
| SspMI | CTAG | 1 cut(s) | 539 |
| StyD4I | CCNGG | 1 cut(s) | 470 |
| StyI | CCWWGG | 2 cut(s) | 229, 380 |
| TaaI | ACNGT | 1 cut(s) | 353 |
| TaqI | TCGA | 2 cut(s) | 258, 303 |
| TasI | AATT | 6 cut(s) | 414, 486, 502, 589, 668, 682 |
| TatI | WGTACW | 1 cut(s) | 535 |
| TauI | GCSGC | 1 cut(s) | 610 |
| TfiI | GAWTC | 3 cut(s) | 292, 365, 385 |
| Tru1I | TTAA | 1 cut(s) | 98 |
| Tru9I | TTAA | 1 cut(s) | 98 |
| TscAI | CASTG | 2 cut(s) | 214, 358 |
| TseFI | GTSAC | 3 cut(s) | 250, 331, 696 |
| TseI | GCWGC | 1 cut(s) | 709 |
| Tsp45I | GTSAC | 3 cut(s) | 250, 331, 696 |
| TspDTI | ATGAA | 4 cut(s) | 17, 510, 676, 681 |
| TspGWI | ACGGA | 2 cut(s) | 105, 417 |
| TspRI | CASTG | 2 cut(s) | 214, 358 |
| VneI | GTGCAC | 1 cut(s) | 354 |
| XapI | RAATTY | 3 cut(s) | 486, 502, 682 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 551 |
| XspI | CTAG | 1 cut(s) | 539 |
| ZrmI | AGTACT | 1 cut(s) | 537 |