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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 1359 |
| AccI | GTMKAC | 2 cut(s) | 43, 1589 |
| AcsI | RAATTY | 2 cut(s) | 490, 1525 |
| AcuI | CTGAAG | 4 cut(s) | 1335, 1458, 1491, 1590 |
| AcyI | GRCGYC | 1 cut(s) | 1023 |
| AfaI | GTAC | 1 cut(s) | 633 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 78 |
| AgsI | TTSAA | 7 cut(s) | 55, 112, 436, 692, 841, 970, 1530 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1091, 1123 |
| AluBI | AGCT | 9 cut(s) | 284, 325, 658, 868, 1090, 1187, 1430, 1448, 1514 |
| AluI | AGCT | 9 cut(s) | 284, 325, 658, 868, 1090, 1187, 1430, 1448, 1514 |
| Alw21I | GWGCWC | 1 cut(s) | 421 |
| Alw26I | GTCTC | 3 cut(s) | 9, 806, 1278 |
| Alw44I | GTGCAC | 1 cut(s) | 417 |
| ApaLI | GTGCAC | 1 cut(s) | 417 |
| ApeKI | GCWGC | 4 cut(s) | 1033, 1430, 1433, 1448 |
| ApoI | RAATTY | 2 cut(s) | 490, 1525 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 359, 391, 896, 928 |
| AsuHPI | GGTGA | 6 cut(s) | 1175, 1205, 1214, 1244, 1283, 1432 |
| AsuNHI | GCTAGC | 1 cut(s) | 868 |
| BaeGI | GKGCMC | 1 cut(s) | 421 |
| BauI | CACGAG | 1 cut(s) | 270 |
| BbsI | GAAGAC | 8 cut(s) | 136, 570, 591, 675, 927, 1302, 1365, 1578 |
| Bbv12I | GWGCWC | 1 cut(s) | 421 |
| BbvCI | CCTCAGC | 1 cut(s) | 659 |
| BbvI | GCAGC | 4 cut(s) | 1045, 1417, 1420, 1435 |
| BccI | CCATC | 9 cut(s) | 156, 540, 643, 1154, 1184, 1193, 1223, 1232, 1271 |
| BciVI | GTATCC | 1 cut(s) | 249 |
| BclI | TGATCA | 1 cut(s) | 84 |
| BcoDI | GTCTC | 3 cut(s) | 9, 806, 1278 |
| BfaI | CTAG | 2 cut(s) | 869, 1094 |
| BfmI | CTRYAG | 1 cut(s) | 44 |
| BfuAI | ACCTGC | 1 cut(s) | 1359 |
| BfuI | GTATCC | 1 cut(s) | 249 |
| BglII | AGATCT | 2 cut(s) | 571, 948 |
| BisI | GCNGC | 4 cut(s) | 1034, 1431, 1434, 1449 |
| BlsI | GCNGC | 4 cut(s) | 1035, 1432, 1435, 1450 |
| BmiI | GGNNCC | 1 cut(s) | 481 |
| BmsI | GCATC | 1 cut(s) | 373 |
| BmtI | GCTAGC | 1 cut(s) | 872 |
| BpiI | GAAGAC | 8 cut(s) | 136, 570, 591, 675, 927, 1302, 1365, 1578 |
| Bpu10I | CCTNAGC | 1 cut(s) | 659 |
| BpuEI | CTTGAG | 2 cut(s) | 813, 1101 |
| Bsa29I | ATCGAT | 1 cut(s) | 411 |
| BsaAI | YACGTR | 1 cut(s) | 1587 |
| BsaBI | GATNNNNATC | 2 cut(s) | 225, 947 |
| BsaHI | GRCGYC | 1 cut(s) | 1023 |
| BsaI | GGTCTC | 1 cut(s) | 9 |
| BsaJI | CCNNGG | 2 cut(s) | 292, 519 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1209, 1239, 1248, 1278, 1571, 1601 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 78 |
| Bse3DI | GCAATG | 1 cut(s) | 606 |
| Bse8I | GATNNNNATC | 2 cut(s) | 225, 947 |
| BseCI | ATCGAT | 1 cut(s) | 411 |
| BseDI | CCNNGG | 2 cut(s) | 292, 519 |
| BseGI | GGATG | 2 cut(s) | 87, 366 |
| BseJI | GATNNNNATC | 2 cut(s) | 225, 947 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 78 |
| BseMI | GCAATG | 1 cut(s) | 606 |
| BseMII | CTCAG | 3 cut(s) | 650, 806, 1391 |
| BseSI | GKGCMC | 1 cut(s) | 421 |
| BseXI | GCAGC | 4 cut(s) | 1045, 1417, 1420, 1435 |
| BsgI | GTGCAG | 1 cut(s) | 521 |
| BshVI | ATCGAT | 1 cut(s) | 411 |
| BsiHKAI | GWGCWC | 1 cut(s) | 421 |
| BslFI | GGGAC | 1 cut(s) | 440 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 78 |
| BsmAI | GTCTC | 3 cut(s) | 9, 806, 1278 |
| BsmBI | CGTCTC | 1 cut(s) | 1278 |
| BsmFI | GGGAC | 1 cut(s) | 440 |
| BsmI | GAATGC | 2 cut(s) | 179, 303 |
| Bso31I | GGTCTC | 1 cut(s) | 9 |
| Bsp1286I | GDGCHC | 1 cut(s) | 421 |
| Bsp143I | GATC | 6 cut(s) | 84, 132, 363, 408, 571, 948 |
| BspCNI | CTCAG | 3 cut(s) | 651, 805, 1390 |
| BspDI | ATCGAT | 1 cut(s) | 411 |
| BspLI | GGNNCC | 1 cut(s) | 481 |
| BspMI | ACCTGC | 1 cut(s) | 1359 |
| BspOI | GCTAGC | 1 cut(s) | 872 |
| BspQI | GCTCTTC | 2 cut(s) | 648, 711 |
| BspTNI | GGTCTC | 1 cut(s) | 9 |
| BsrDI | GCAATG | 1 cut(s) | 606 |
| BssECI | CCNNGG | 2 cut(s) | 292, 519 |
| BssMI | GATC | 6 cut(s) | 84, 132, 363, 408, 571, 948 |
| BssNAI | GTATAC | 1 cut(s) | 1590 |
| BssNI | GRCGYC | 1 cut(s) | 1023 |
| BssSI | CACGAG | 1 cut(s) | 270 |
| BssT1I | CCWWGG | 2 cut(s) | 292, 519 |
| Bst1107I | GTATAC | 1 cut(s) | 1590 |
| Bst2BI | CACGAG | 1 cut(s) | 270 |
| Bst4CI | ACNGT | 3 cut(s) | 30, 48, 1151 |
| Bst6I | CTCTTC | 7 cut(s) | 648, 711, 743, 849, 1164, 1203, 1242 |
| BstACI | GRCGYC | 1 cut(s) | 1023 |
| BstBAI | YACGTR | 1 cut(s) | 1587 |
| BstC8I | GCNNGC | 2 cut(s) | 870, 1512 |
| BstDEI | CTNAG | 4 cut(s) | 548, 659, 792, 1377 |
| BstF5I | GGATG | 2 cut(s) | 87, 366 |
| BstKTI | GATC | 6 cut(s) | 87, 135, 366, 411, 574, 951 |
| BstMAI | GTCTC | 3 cut(s) | 9, 806, 1278 |
| BstMBI | GATC | 6 cut(s) | 84, 132, 363, 408, 571, 948 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 331, 874 |
| BstSFI | CTRYAG | 1 cut(s) | 44 |
| BstSLI | GKGCMC | 1 cut(s) | 421 |
| BstV1I | GCAGC | 4 cut(s) | 1045, 1417, 1420, 1435 |
| BstV2I | GAAGAC | 8 cut(s) | 136, 570, 591, 675, 927, 1302, 1365, 1578 |
| BstX2I | RGATCY | 2 cut(s) | 571, 948 |
| BstYI | RGATCY | 2 cut(s) | 571, 948 |
| BstZ17I | GTATAC | 1 cut(s) | 1590 |
| Bsu15I | ATCGAT | 1 cut(s) | 411 |
| BsuI | GTATCC | 1 cut(s) | 249 |
| BsuTUI | ATCGAT | 1 cut(s) | 411 |
| BtgZI | GCGATG | 1 cut(s) | 419 |
| BtsCI | GGATG | 2 cut(s) | 87, 366 |
| BveI | ACCTGC | 1 cut(s) | 1359 |
| Cac8I | GCNNGC | 2 cut(s) | 870, 1512 |
| ClaI | ATCGAT | 1 cut(s) | 411 |
| CseI | GACGC | 1 cut(s) | 1012 |
| Csp6I | GTAC | 1 cut(s) | 632 |
| CviAII | CATG | 2 cut(s) | 510, 605 |
| CviQI | GTAC | 1 cut(s) | 632 |
| DdeI | CTNAG | 4 cut(s) | 548, 659, 792, 1377 |
| DpnI | GATC | 6 cut(s) | 86, 134, 365, 410, 573, 950 |
| DpnII | GATC | 6 cut(s) | 84, 132, 363, 408, 571, 948 |
| DraI | TTTAAA | 1 cut(s) | 162 |
| Eam1104I | CTCTTC | 7 cut(s) | 648, 711, 743, 849, 1164, 1203, 1242 |
| EarI | CTCTTC | 7 cut(s) | 648, 711, 743, 849, 1164, 1203, 1242 |
| Eco130I | CCWWGG | 2 cut(s) | 292, 519 |
| Eco31I | GGTCTC | 1 cut(s) | 9 |
| Eco57I | CTGAAG | 4 cut(s) | 1335, 1458, 1491, 1590 |
| EcoRI | GAATTC | 1 cut(s) | 490 |
| EcoT14I | CCWWGG | 2 cut(s) | 292, 519 |
| EcoT22I | ATGCAT | 1 cut(s) | 606 |
| ErhI | CCWWGG | 2 cut(s) | 292, 519 |
| Esp3I | CGTCTC | 1 cut(s) | 1278 |
| FaeI | CATG | 2 cut(s) | 513, 608 |
| FaqI | GGGAC | 1 cut(s) | 440 |
| FatI | CATG | 2 cut(s) | 509, 604 |
| FauNDI | CATATG | 1 cut(s) | 217 |
| FbaI | TGATCA | 1 cut(s) | 84 |
| FblI | GTMKAC | 2 cut(s) | 43, 1589 |
| Fnu4HI | GCNGC | 4 cut(s) | 1034, 1431, 1434, 1449 |
| FokI | GGATG | 2 cut(s) | 94, 373 |
| Fsp4HI | GCNGC | 4 cut(s) | 1034, 1431, 1434, 1449 |
| FspBI | CTAG | 2 cut(s) | 869, 1094 |
| GluI | GCNGC | 4 cut(s) | 1034, 1431, 1434, 1449 |
| HgaI | GACGC | 1 cut(s) | 1012 |
| Hin1I | GRCGYC | 1 cut(s) | 1023 |
| Hin1II | CATG | 2 cut(s) | 513, 608 |
| HincII | GTYRAC | 1 cut(s) | 849 |
| HindII | GTYRAC | 1 cut(s) | 849 |
| HinfI | GANTC | 7 cut(s) | 312, 355, 448, 644, 770, 1112, 1542 |
| HphI | GGTGA | 6 cut(s) | 1175, 1205, 1214, 1244, 1283, 1432 |
| Hpy166II | GTNNAC | 5 cut(s) | 44, 419, 849, 1584, 1590 |
| Hpy188I | TCNGA | 8 cut(s) | 231, 360, 576, 614, 640, 747, 795, 1380 |
| Hpy188III | TCNNGA | 8 cut(s) | 92, 211, 272, 830, 1058, 1118, 1244, 1546 |
| Hpy8I | GTNNAC | 5 cut(s) | 44, 419, 849, 1584, 1590 |
| Hpy99I | CGWCG | 2 cut(s) | 504, 726 |
| HpyAV | CCTTC | 9 cut(s) | 302, 751, 994, 1093, 1214, 1253, 1358, 1404, 1555 |
| HpyCH4III | ACNGT | 3 cut(s) | 30, 48, 1151 |
| HpyCH4IV | ACGT | 1 cut(s) | 1586 |
| HpyCH4V | TGCA | 6 cut(s) | 177, 386, 419, 538, 604, 955 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 331, 874 |
| HpyF3I | CTNAG | 4 cut(s) | 548, 659, 792, 1377 |
| HpySE526I | ACGT | 1 cut(s) | 1586 |
| Hsp92I | GRCGYC | 1 cut(s) | 1023 |
| Hsp92II | CATG | 2 cut(s) | 513, 608 |
| Ksp22I | TGATCA | 1 cut(s) | 84 |
| Kzo9I | GATC | 6 cut(s) | 84, 132, 363, 408, 571, 948 |
| LguI | GCTCTTC | 2 cut(s) | 648, 711 |
| LmnI | GCTCC | 1 cut(s) | 1184 |
| Lsp1109I | GCAGC | 4 cut(s) | 1045, 1417, 1420, 1435 |
| LweI | GCATC | 1 cut(s) | 373 |
| MaeI | CTAG | 2 cut(s) | 869, 1094 |
| MaeII | ACGT | 1 cut(s) | 1586 |
| MaeIII | GTNAC | 3 cut(s) | 313, 394, 676 |
| MalI | GATC | 6 cut(s) | 86, 134, 365, 410, 573, 950 |
| MboI | GATC | 6 cut(s) | 84, 132, 363, 408, 571, 948 |
| MflI | RGATCY | 2 cut(s) | 571, 948 |
| MhlI | GDGCHC | 1 cut(s) | 421 |
| MluCI | AATT | 5 cut(s) | 474, 490, 962, 1067, 1525 |
| MlyI | GAGTC | 2 cut(s) | 321, 764 |
| MmeI | TCCRAC | 4 cut(s) | 707, 756, 882, 1089 |
| Mph1103I | ATGCAT | 1 cut(s) | 606 |
| MseI | TTAA | 3 cut(s) | 161, 1266, 1485 |
| Mva1269I | GAATGC | 2 cut(s) | 179, 303 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 331, 874 |
| NdeI | CATATG | 1 cut(s) | 217 |
| NdeII | GATC | 6 cut(s) | 84, 132, 363, 408, 571, 948 |
| NheI | GCTAGC | 1 cut(s) | 868 |
| NlaIII | CATG | 2 cut(s) | 513, 608 |
| NlaIV | GGNNCC | 1 cut(s) | 481 |
| NmuCI | GTSAC | 2 cut(s) | 313, 394 |
| NsiI | ATGCAT | 1 cut(s) | 606 |
| PciSI | GCTCTTC | 2 cut(s) | 648, 711 |
| PctI | GAATGC | 2 cut(s) | 179, 303 |
| PfeI | GAWTC | 5 cut(s) | 355, 448, 644, 1112, 1542 |
| PkrI | GCNGC | 4 cut(s) | 1035, 1432, 1435, 1450 |
| PleI | GAGTC | 2 cut(s) | 320, 764 |
| PpsI | GAGTC | 2 cut(s) | 320, 764 |
| Ppu21I | YACGTR | 1 cut(s) | 1587 |
| PspN4I | GGNNCC | 1 cut(s) | 481 |
| PsuI | RGATCY | 2 cut(s) | 571, 948 |
| RsaI | GTAC | 1 cut(s) | 633 |
| RsaNI | GTAC | 1 cut(s) | 632 |
| SapI | GCTCTTC | 2 cut(s) | 648, 711 |
| SaqAI | TTAA | 3 cut(s) | 161, 1266, 1485 |
| SatI | GCNGC | 4 cut(s) | 1034, 1431, 1434, 1449 |
| Sau3AI | GATC | 6 cut(s) | 84, 132, 363, 408, 571, 948 |
| SchI | GAGTC | 2 cut(s) | 321, 764 |
| SduI | GDGCHC | 1 cut(s) | 421 |
| SfaNI | GCATC | 1 cut(s) | 373 |
| SfcI | CTRYAG | 1 cut(s) | 44 |
| SmlI | CTYRAG | 2 cut(s) | 828, 1116 |
| SmoI | CTYRAG | 2 cut(s) | 828, 1116 |
| Sse9I | AATT | 5 cut(s) | 474, 490, 962, 1067, 1525 |
| SspMI | CTAG | 2 cut(s) | 869, 1094 |
| StyI | CCWWGG | 2 cut(s) | 292, 519 |
| TaaI | ACNGT | 3 cut(s) | 30, 48, 1151 |
| TaiI | ACGT | 1 cut(s) | 1589 |
| TaqI | TCGA | 3 cut(s) | 321, 366, 411 |
| TaqII | GACCGA | 2 cut(s) | 33, 866 |
| TasI | AATT | 5 cut(s) | 474, 490, 962, 1067, 1525 |
| TfiI | GAWTC | 5 cut(s) | 355, 448, 644, 1112, 1542 |
| Tru1I | TTAA | 3 cut(s) | 161, 1266, 1485 |
| Tru9I | TTAA | 3 cut(s) | 161, 1266, 1485 |
| TseFI | GTSAC | 2 cut(s) | 313, 394 |
| TseI | GCWGC | 4 cut(s) | 1033, 1430, 1433, 1448 |
| Tsp45I | GTSAC | 2 cut(s) | 313, 394 |
| TspGWI | ACGGA | 2 cut(s) | 168, 1144 |
| VneI | GTGCAC | 1 cut(s) | 417 |
| XapI | RAATTY | 2 cut(s) | 490, 1525 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 539 |
| XmiI | GTMKAC | 2 cut(s) | 43, 1589 |
| XspI | CTAG | 2 cut(s) | 869, 1094 |
| Zsp2I | ATGCAT | 1 cut(s) | 606 |