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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 350 |
| AatII | GACGTC | 1 cut(s) | 843 |
| AciI | CCGC | 1 cut(s) | 374 |
| AcsI | RAATTY | 3 cut(s) | 252, 268, 448 |
| AcvI | CACGTG | 1 cut(s) | 313 |
| AcyI | GRCGYC | 1 cut(s) | 840 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 537 |
| AgsI | TTSAA | 3 cut(s) | 139, 658, 787 |
| AjnI | CCWGG | 1 cut(s) | 236 |
| AluBI | AGCT | 4 cut(s) | 28, 395, 475, 685 |
| AluI | AGCT | 4 cut(s) | 28, 395, 475, 685 |
| Alw21I | GWGCWC | 3 cut(s) | 124, 318, 519 |
| Alw26I | GTCTC | 1 cut(s) | 623 |
| Alw44I | GTGCAC | 2 cut(s) | 120, 314 |
| ApaLI | GTGCAC | 2 cut(s) | 120, 314 |
| ApeKI | GCWGC | 2 cut(s) | 258, 475 |
| ApoI | RAATTY | 3 cut(s) | 252, 268, 448 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 713, 745 |
| AsuNHI | GCTAGC | 1 cut(s) | 685 |
| AxyI | CCTNAGG | 1 cut(s) | 220 |
| BaeGI | GKGCMC | 2 cut(s) | 124, 318 |
| BbrPI | CACGTG | 1 cut(s) | 313 |
| BbsI | GAAGAC | 3 cut(s) | 348, 407, 744 |
| Bbv12I | GWGCWC | 3 cut(s) | 124, 318, 519 |
| BbvI | GCAGC | 2 cut(s) | 270, 462 |
| BccI | CCATC | 3 cut(s) | 103, 403, 453 |
| BceAI | ACGGC | 1 cut(s) | 554 |
| BciT130I | CCWGG | 1 cut(s) | 238 |
| BciVI | GTATCC | 1 cut(s) | 211 |
| BcoDI | GTCTC | 1 cut(s) | 623 |
| BfaI | CTAG | 2 cut(s) | 305, 686 |
| BfuI | GTATCC | 1 cut(s) | 211 |
| BglII | AGATCT | 1 cut(s) | 765 |
| BisI | GCNGC | 2 cut(s) | 259, 476 |
| BlsI | GCNGC | 2 cut(s) | 260, 477 |
| Bme1390I | CCNGG | 1 cut(s) | 238 |
| BmrFI | CCNGG | 1 cut(s) | 238 |
| BmsI | GCATC | 3 cut(s) | 72, 76, 182 |
| BmtI | GCTAGC | 1 cut(s) | 689 |
| BpiI | GAAGAC | 3 cut(s) | 348, 407, 744 |
| BpuEI | CTTGAG | 1 cut(s) | 630 |
| BsaAI | YACGTR | 1 cut(s) | 313 |
| BsaBI | GATNNNNATC | 1 cut(s) | 764 |
| BsaHI | GRCGYC | 1 cut(s) | 840 |
| BsaJI | CCNNGG | 1 cut(s) | 146 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 537 |
| Bse21I | CCTNAGG | 1 cut(s) | 220 |
| Bse8I | GATNNNNATC | 1 cut(s) | 764 |
| BseBI | CCWGG | 1 cut(s) | 238 |
| BseDI | CCNNGG | 1 cut(s) | 146 |
| BseJI | GATNNNNATC | 1 cut(s) | 764 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 537 |
| BseMII | CTCAG | 3 cut(s) | 234, 387, 623 |
| BseRI | GAGGAG | 1 cut(s) | 429 |
| BseSI | GKGCMC | 2 cut(s) | 124, 318 |
| BseXI | GCAGC | 2 cut(s) | 270, 462 |
| BsgI | GTGCAG | 2 cut(s) | 199, 461 |
| BsiHKAI | GWGCWC | 3 cut(s) | 124, 318, 519 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 537 |
| BsmAI | GTCTC | 1 cut(s) | 623 |
| Bsp1286I | GDGCHC | 3 cut(s) | 124, 318, 519 |
| Bsp143I | GATC | 1 cut(s) | 765 |
| BspACI | CCGC | 1 cut(s) | 374 |
| BspCNI | CTCAG | 3 cut(s) | 233, 388, 622 |
| BspHI | TCATGA | 1 cut(s) | 186 |
| BspOI | GCTAGC | 1 cut(s) | 689 |
| BssECI | CCNNGG | 1 cut(s) | 146 |
| BssMI | GATC | 1 cut(s) | 765 |
| BssNI | GRCGYC | 1 cut(s) | 840 |
| BssT1I | CCWWGG | 1 cut(s) | 146 |
| Bst2UI | CCWGG | 1 cut(s) | 238 |
| Bst4CI | ACNGT | 1 cut(s) | 119 |
| Bst6I | CTCTTC | 1 cut(s) | 666 |
| BstACI | GRCGYC | 1 cut(s) | 840 |
| BstBAI | YACGTR | 1 cut(s) | 313 |
| BstC8I | GCNNGC | 1 cut(s) | 687 |
| BstDEI | CTNAG | 4 cut(s) | 220, 326, 396, 609 |
| BstKTI | GATC | 1 cut(s) | 768 |
| BstMAI | GTCTC | 1 cut(s) | 623 |
| BstMBI | GATC | 1 cut(s) | 765 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 34, 514, 691 |
| BstNI | CCWGG | 1 cut(s) | 238 |
| BstSCI | CCNGG | 1 cut(s) | 236 |
| BstSLI | GKGCMC | 2 cut(s) | 124, 318 |
| BstV1I | GCAGC | 2 cut(s) | 270, 462 |
| BstV2I | GAAGAC | 3 cut(s) | 348, 407, 744 |
| BstX2I | RGATCY | 1 cut(s) | 765 |
| BstYI | RGATCY | 1 cut(s) | 765 |
| Bsu36I | CCTNAGG | 1 cut(s) | 220 |
| BsuI | GTATCC | 1 cut(s) | 211 |
| BtgZI | GCGATG | 2 cut(s) | 122, 159 |
| BtsIMutI | CAGTG | 1 cut(s) | 124 |
| Cac8I | GCNNGC | 1 cut(s) | 687 |
| CciI | TCATGA | 1 cut(s) | 186 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 150, 185 |
| CviAII | CATG | 3 cut(s) | 187, 288, 382 |
| CviJI | RGCY | 7 cut(s) | 28, 49, 395, 475, 588, 685, 728 |
| CviKI_1 | RGCY | 7 cut(s) | 28, 49, 395, 475, 588, 685, 728 |
| DdeI | CTNAG | 4 cut(s) | 220, 326, 396, 609 |
| DpnI | GATC | 1 cut(s) | 767 |
| DpnII | GATC | 1 cut(s) | 765 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 350 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 350 |
| Eam1104I | CTCTTC | 1 cut(s) | 666 |
| EarI | CTCTTC | 1 cut(s) | 666 |
| Eco130I | CCWWGG | 1 cut(s) | 146 |
| Eco72I | CACGTG | 1 cut(s) | 313 |
| Eco81I | CCTNAGG | 1 cut(s) | 220 |
| EcoRI | GAATTC | 1 cut(s) | 268 |
| EcoRII | CCWGG | 1 cut(s) | 236 |
| EcoT14I | CCWWGG | 1 cut(s) | 146 |
| ErhI | CCWWGG | 1 cut(s) | 146 |
| FaeI | CATG | 3 cut(s) | 190, 291, 385 |
| FaiI | YATR | 5 cut(s) | 188, 289, 383, 455, 746 |
| FatI | CATG | 3 cut(s) | 186, 287, 381 |
| Fnu4HI | GCNGC | 2 cut(s) | 259, 476 |
| Fsp4HI | GCNGC | 2 cut(s) | 259, 476 |
| FspBI | CTAG | 2 cut(s) | 305, 686 |
| GluI | GCNGC | 2 cut(s) | 259, 476 |
| Hin1I | GRCGYC | 1 cut(s) | 840 |
| Hin1II | CATG | 3 cut(s) | 190, 291, 385 |
| HincII | GTYRAC | 2 cut(s) | 115, 666 |
| HindII | GTYRAC | 2 cut(s) | 115, 666 |
| HinfI | GANTC | 6 cut(s) | 15, 58, 131, 151, 190, 616 |
| Hpy166II | GTNNAC | 5 cut(s) | 115, 122, 316, 371, 666 |
| Hpy188I | TCNGA | 2 cut(s) | 564, 612 |
| Hpy188III | TCNNGA | 3 cut(s) | 187, 424, 647 |
| Hpy8I | GTNNAC | 5 cut(s) | 115, 122, 316, 371, 666 |
| Hpy99I | CGWCG | 2 cut(s) | 282, 473 |
| HpyAV | CCTTC | 4 cut(s) | 5, 214, 568, 811 |
| HpyCH4III | ACNGT | 1 cut(s) | 119 |
| HpyCH4IV | ACGT | 2 cut(s) | 312, 840 |
| HpyCH4V | TGCA | 7 cut(s) | 89, 122, 216, 258, 316, 478, 772 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 34, 514, 691 |
| HpyF3I | CTNAG | 4 cut(s) | 220, 326, 396, 609 |
| HpySE526I | ACGT | 2 cut(s) | 312, 840 |
| Hsp92I | GRCGYC | 1 cut(s) | 840 |
| Hsp92II | CATG | 3 cut(s) | 190, 291, 385 |
| Kzo9I | GATC | 1 cut(s) | 765 |
| LmnI | GCTCC | 1 cut(s) | 416 |
| LpnPI | CCDG | 8 cut(s) | 56, 207, 223, 250, 323, 348, 533, 650 |
| Lsp1109I | GCAGC | 2 cut(s) | 270, 462 |
| LweI | GCATC | 3 cut(s) | 72, 76, 182 |
| MaeI | CTAG | 2 cut(s) | 305, 686 |
| MaeII | ACGT | 2 cut(s) | 312, 840 |
| MaeIII | GTNAC | 3 cut(s) | 16, 97, 462 |
| MalI | GATC | 1 cut(s) | 767 |
| MboI | GATC | 1 cut(s) | 765 |
| MflI | RGATCY | 1 cut(s) | 765 |
| MhlI | GDGCHC | 3 cut(s) | 124, 318, 519 |
| MluCI | AATT | 6 cut(s) | 180, 252, 268, 355, 448, 779 |
| MlyI | GAGTC | 3 cut(s) | 24, 199, 625 |
| MmeI | TCCRAC | 3 cut(s) | 61, 573, 699 |
| MnlI | CCTC | 5 cut(s) | 160, 229, 407, 727, 829 |
| MseI | TTAA | 2 cut(s) | 299, 581 |
| MspR9I | CCNGG | 1 cut(s) | 238 |
| MvaI | CCWGG | 1 cut(s) | 238 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 34, 514, 691 |
| NdeII | GATC | 1 cut(s) | 765 |
| NheI | GCTAGC | 1 cut(s) | 685 |
| NlaIII | CATG | 3 cut(s) | 190, 291, 385 |
| NmuCI | GTSAC | 3 cut(s) | 16, 97, 462 |
| PagI | TCATGA | 1 cut(s) | 186 |
| PfeI | GAWTC | 3 cut(s) | 58, 131, 151 |
| PfoI | TCCNGGA | 1 cut(s) | 236 |
| PkrI | GCNGC | 2 cut(s) | 260, 477 |
| PleI | GAGTC | 3 cut(s) | 23, 198, 624 |
| PmaCI | CACGTG | 1 cut(s) | 313 |
| PmlI | CACGTG | 1 cut(s) | 313 |
| PpsI | GAGTC | 3 cut(s) | 23, 198, 624 |
| Ppu21I | YACGTR | 1 cut(s) | 313 |
| Psp6I | CCWGG | 1 cut(s) | 236 |
| PspCI | CACGTG | 1 cut(s) | 313 |
| PspGI | CCWGG | 1 cut(s) | 236 |
| PsuI | RGATCY | 1 cut(s) | 765 |
| SaqAI | TTAA | 2 cut(s) | 299, 581 |
| SatI | GCNGC | 2 cut(s) | 259, 476 |
| Sau3AI | GATC | 1 cut(s) | 765 |
| SchI | GAGTC | 3 cut(s) | 24, 199, 625 |
| ScrFI | CCNGG | 1 cut(s) | 238 |
| SduI | GDGCHC | 3 cut(s) | 124, 318, 519 |
| SfaNI | GCATC | 3 cut(s) | 72, 76, 182 |
| SmlI | CTYRAG | 1 cut(s) | 645 |
| SmoI | CTYRAG | 1 cut(s) | 645 |
| Sse9I | AATT | 6 cut(s) | 180, 252, 268, 355, 448, 779 |
| SsiI | CCGC | 1 cut(s) | 374 |
| SspMI | CTAG | 2 cut(s) | 305, 686 |
| StyD4I | CCNGG | 1 cut(s) | 236 |
| StyI | CCWWGG | 1 cut(s) | 146 |
| TaaI | ACNGT | 1 cut(s) | 119 |
| TaiI | ACGT | 2 cut(s) | 315, 843 |
| TaqI | TCGA | 3 cut(s) | 24, 69, 471 |
| TaqII | GACCGA | 1 cut(s) | 683 |
| TasI | AATT | 6 cut(s) | 180, 252, 268, 355, 448, 779 |
| TfiI | GAWTC | 3 cut(s) | 58, 131, 151 |
| Tru1I | TTAA | 2 cut(s) | 299, 581 |
| Tru9I | TTAA | 2 cut(s) | 299, 581 |
| TscAI | CASTG | 1 cut(s) | 124 |
| TseFI | GTSAC | 3 cut(s) | 16, 97, 462 |
| TseI | GCWGC | 2 cut(s) | 258, 475 |
| Tsp45I | GTSAC | 3 cut(s) | 16, 97, 462 |
| TspDTI | ATGAA | 5 cut(s) | 68, 276, 442, 587, 693 |
| TspGWI | ACGGA | 1 cut(s) | 183 |
| TspRI | CASTG | 1 cut(s) | 124 |
| VneI | GTGCAC | 2 cut(s) | 120, 314 |
| XapI | RAATTY | 3 cut(s) | 252, 268, 448 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 317 |
| XspI | CTAG | 2 cut(s) | 305, 686 |
| ZraI | GACGTC | 1 cut(s) | 841 |