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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 129 |
| Acc36I | ACCTGC | 1 cut(s) | 447 |
| AccI | GTMKAC | 1 cut(s) | 674 |
| AclWI | GGATC | 1 cut(s) | 630 |
| AcsI | RAATTY | 1 cut(s) | 610 |
| AcuI | CTGAAG | 3 cut(s) | 423, 546, 675 |
| AcyI | GRCGYC | 1 cut(s) | 126 |
| AgsI | TTSAA | 2 cut(s) | 73, 615 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 194, 226 |
| AluBI | AGCT | 7 cut(s) | 193, 299, 311, 335, 518, 536, 599 |
| AluI | AGCT | 7 cut(s) | 193, 299, 311, 335, 518, 536, 599 |
| Alw26I | GTCTC | 1 cut(s) | 378 |
| AlwI | GGATC | 1 cut(s) | 630 |
| ApeKI | GCWGC | 4 cut(s) | 136, 518, 521, 536 |
| ApoI | RAATTY | 1 cut(s) | 610 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 31 |
| AsuHPI | GGTGA | 7 cut(s) | 278, 287, 317, 326, 353, 383, 520 |
| BbsI | GAAGAC | 3 cut(s) | 30, 453, 663 |
| BbvI | GCAGC | 4 cut(s) | 148, 505, 508, 523 |
| BccI | CCATC | 5 cut(s) | 257, 266, 296, 332, 371 |
| BcoDI | GTCTC | 1 cut(s) | 378 |
| BfuAI | ACCTGC | 1 cut(s) | 447 |
| BisI | GCNGC | 4 cut(s) | 137, 519, 522, 537 |
| BlsI | GCNGC | 4 cut(s) | 138, 520, 523, 538 |
| BpiI | GAAGAC | 3 cut(s) | 30, 453, 663 |
| BpmI | CTGGAG | 1 cut(s) | 218 |
| BpuEI | CTTGAG | 1 cut(s) | 204 |
| BsaBI | GATNNNNATC | 1 cut(s) | 50 |
| BsaHI | GRCGYC | 1 cut(s) | 126 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 348, 378, 656, 686 |
| Bse1I | ACTGG | 2 cut(s) | 180, 201 |
| Bse8I | GATNNNNATC | 1 cut(s) | 50 |
| BseGI | GGATG | 1 cut(s) | 277 |
| BseJI | GATNNNNATC | 1 cut(s) | 50 |
| BseMII | CTCAG | 1 cut(s) | 479 |
| BseNI | ACTGG | 2 cut(s) | 180, 201 |
| BseXI | GCAGC | 4 cut(s) | 148, 505, 508, 523 |
| BsmAI | GTCTC | 1 cut(s) | 378 |
| BsmBI | CGTCTC | 1 cut(s) | 378 |
| Bsp143I | GATC | 1 cut(s) | 622 |
| BspCNI | CTCAG | 1 cut(s) | 478 |
| BspMI | ACCTGC | 1 cut(s) | 447 |
| BspPI | GGATC | 1 cut(s) | 630 |
| BsrI | ACTGG | 2 cut(s) | 180, 201 |
| BssMI | GATC | 1 cut(s) | 622 |
| BssNAI | GTATAC | 1 cut(s) | 675 |
| BssNI | GRCGYC | 1 cut(s) | 126 |
| Bst1107I | GTATAC | 1 cut(s) | 675 |
| Bst4CI | ACNGT | 2 cut(s) | 254, 260 |
| Bst6I | CTCTTC | 2 cut(s) | 276, 342 |
| BstACI | GRCGYC | 1 cut(s) | 126 |
| BstC8I | GCNNGC | 1 cut(s) | 597 |
| BstDEI | CTNAG | 1 cut(s) | 465 |
| BstF5I | GGATG | 1 cut(s) | 277 |
| BstKTI | GATC | 1 cut(s) | 625 |
| BstMAI | GTCTC | 1 cut(s) | 378 |
| BstMBI | GATC | 1 cut(s) | 622 |
| BstV1I | GCAGC | 4 cut(s) | 148, 505, 508, 523 |
| BstV2I | GAAGAC | 3 cut(s) | 30, 453, 663 |
| BstZ17I | GTATAC | 1 cut(s) | 675 |
| BtsCI | GGATG | 1 cut(s) | 277 |
| BtsIMutI | CAGTG | 1 cut(s) | 265 |
| BveI | ACCTGC | 1 cut(s) | 447 |
| Cac8I | GCNNGC | 1 cut(s) | 597 |
| CviAII | CATG | 1 cut(s) | 670 |
| CviJI | RGCY | 9 cut(s) | 14, 193, 299, 311, 335, 518, 536, 599, 650 |
| CviKI_1 | RGCY | 9 cut(s) | 14, 193, 299, 311, 335, 518, 536, 599, 650 |
| DdeI | CTNAG | 1 cut(s) | 465 |
| DpnI | GATC | 1 cut(s) | 624 |
| DpnII | GATC | 1 cut(s) | 622 |
| Eam1104I | CTCTTC | 2 cut(s) | 276, 342 |
| EarI | CTCTTC | 2 cut(s) | 276, 342 |
| Eco57I | CTGAAG | 3 cut(s) | 423, 546, 675 |
| Esp3I | CGTCTC | 1 cut(s) | 378 |
| FaeI | CATG | 1 cut(s) | 673 |
| FaiI | YATR | 6 cut(s) | 32, 51, 209, 245, 671, 675 |
| FatI | CATG | 1 cut(s) | 669 |
| FblI | GTMKAC | 1 cut(s) | 674 |
| Fnu4HI | GCNGC | 4 cut(s) | 137, 519, 522, 537 |
| FokI | GGATG | 1 cut(s) | 284 |
| Fsp4HI | GCNGC | 4 cut(s) | 137, 519, 522, 537 |
| GluI | GCNGC | 4 cut(s) | 137, 519, 522, 537 |
| GsuI | CTGGAG | 1 cut(s) | 218 |
| Hin1I | GRCGYC | 1 cut(s) | 126 |
| Hin1II | CATG | 1 cut(s) | 673 |
| HinfI | GANTC | 2 cut(s) | 215, 627 |
| HphI | GGTGA | 7 cut(s) | 278, 287, 317, 326, 353, 383, 520 |
| Hpy166II | GTNNAC | 1 cut(s) | 675 |
| Hpy188I | TCNGA | 1 cut(s) | 468 |
| Hpy188III | TCNNGA | 3 cut(s) | 161, 221, 631 |
| Hpy8I | GTNNAC | 1 cut(s) | 675 |
| HpyAV | CCTTC | 7 cut(s) | 97, 287, 323, 353, 446, 492, 640 |
| HpyCH4III | ACNGT | 2 cut(s) | 254, 260 |
| HpyCH4IV | ACGT | 1 cut(s) | 126 |
| HpyCH4V | TGCA | 1 cut(s) | 58 |
| HpyF3I | CTNAG | 1 cut(s) | 465 |
| HpySE526I | ACGT | 1 cut(s) | 126 |
| Hsp92I | GRCGYC | 1 cut(s) | 126 |
| Hsp92II | CATG | 1 cut(s) | 673 |
| Kzo9I | GATC | 1 cut(s) | 622 |
| LmnI | GCTCC | 2 cut(s) | 296, 332 |
| LpnPI | CCDG | 9 cut(s) | 146, 161, 182, 297, 414, 430, 442, 458, 567 |
| Lsp1109I | GCAGC | 4 cut(s) | 148, 505, 508, 523 |
| MaeII | ACGT | 1 cut(s) | 126 |
| MaeIII | GTNAC | 1 cut(s) | 254 |
| MalI | GATC | 1 cut(s) | 624 |
| MboI | GATC | 1 cut(s) | 622 |
| MluCI | AATT | 3 cut(s) | 65, 170, 610 |
| MmeI | TCCRAC | 1 cut(s) | 192 |
| MnlI | CCTC | 9 cut(s) | 13, 115, 217, 262, 271, 277, 310, 343, 696 |
| MseI | TTAA | 2 cut(s) | 366, 570 |
| NdeII | GATC | 1 cut(s) | 622 |
| NlaIII | CATG | 1 cut(s) | 673 |
| PfeI | GAWTC | 2 cut(s) | 215, 627 |
| PkrI | GCNGC | 4 cut(s) | 138, 520, 523, 538 |
| SaqAI | TTAA | 2 cut(s) | 366, 570 |
| SatI | GCNGC | 4 cut(s) | 137, 519, 522, 537 |
| Sau3AI | GATC | 1 cut(s) | 622 |
| SmlI | CTYRAG | 1 cut(s) | 219 |
| SmoI | CTYRAG | 1 cut(s) | 219 |
| Sse9I | AATT | 3 cut(s) | 65, 170, 610 |
| TaaI | ACNGT | 2 cut(s) | 254, 260 |
| TaiI | ACGT | 1 cut(s) | 129 |
| TaqI | TCGA | 1 cut(s) | 625 |
| TasI | AATT | 3 cut(s) | 65, 170, 610 |
| TfiI | GAWTC | 2 cut(s) | 215, 627 |
| Tru1I | TTAA | 2 cut(s) | 366, 570 |
| Tru9I | TTAA | 2 cut(s) | 366, 570 |
| TscAI | CASTG | 1 cut(s) | 265 |
| TseI | GCWGC | 4 cut(s) | 136, 518, 521, 536 |
| TspDTI | ATGAA | 5 cut(s) | 183, 408, 558, 593, 658 |
| TspRI | CASTG | 1 cut(s) | 265 |
| XapI | RAATTY | 1 cut(s) | 610 |
| XmiI | GTMKAC | 1 cut(s) | 674 |
| ZraI | GACGTC | 1 cut(s) | 127 |