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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 137 |
| AccII | CGCG | 2 cut(s) | 38, 790 |
| AciI | CCGC | 2 cut(s) | 776, 790 |
| AclWI | GGATC | 2 cut(s) | 515, 764 |
| AcoI | YGGCCR | 1 cut(s) | 10 |
| AcsI | RAATTY | 1 cut(s) | 551 |
| AcuI | CTGAAG | 2 cut(s) | 842, 855 |
| AfaI | GTAC | 1 cut(s) | 254 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 590, 628, 647 |
| AgeI | ACCGGT | 1 cut(s) | 716 |
| AgsI | TTSAA | 5 cut(s) | 488, 499, 557, 783, 799 |
| AjnI | CCWGG | 1 cut(s) | 345 |
| AluBI | AGCT | 7 cut(s) | 24, 97, 289, 416, 455, 658, 760 |
| AluI | AGCT | 7 cut(s) | 24, 97, 289, 416, 455, 658, 760 |
| Alw21I | GWGCWC | 2 cut(s) | 457, 762 |
| AlwI | GGATC | 2 cut(s) | 515, 764 |
| AoxI | GGCC | 1 cut(s) | 10 |
| ApeKI | GCWGC | 5 cut(s) | 342, 595, 598, 652, 655 |
| ApoI | RAATTY | 1 cut(s) | 551 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 308, 340 |
| AsiGI | ACCGGT | 1 cut(s) | 716 |
| AsuHPI | GGTGA | 1 cut(s) | 304 |
| BalI | TGGCCA | 1 cut(s) | 12 |
| BanII | GRGCYC | 3 cut(s) | 282, 457, 762 |
| Bbv12I | GWGCWC | 2 cut(s) | 457, 762 |
| BbvI | GCAGC | 5 cut(s) | 354, 607, 610, 664, 667 |
| BciT130I | CCWGG | 1 cut(s) | 347 |
| BfaI | CTAG | 2 cut(s) | 339, 365 |
| BisI | GCNGC | 6 cut(s) | 343, 596, 599, 653, 656, 777 |
| BlsI | GCNGC | 6 cut(s) | 344, 597, 600, 654, 657, 778 |
| Bme1390I | CCNGG | 1 cut(s) | 347 |
| BmiI | GGNNCC | 1 cut(s) | 281 |
| BmrFI | CCNGG | 1 cut(s) | 347 |
| BmsI | GCATC | 2 cut(s) | 321, 697 |
| Bpu10I | CCTNAGC | 1 cut(s) | 108 |
| BsaBI | GATNNNNATC | 2 cut(s) | 32, 636 |
| BsaWI | WCCGGW | 1 cut(s) | 716 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 590, 628, 647 |
| Bse118I | RCCGGY | 1 cut(s) | 716 |
| Bse1I | ACTGG | 1 cut(s) | 13 |
| Bse3DI | GCAATG | 1 cut(s) | 382 |
| Bse8I | GATNNNNATC | 2 cut(s) | 32, 636 |
| BseBI | CCWGG | 1 cut(s) | 347 |
| BseGI | GGATG | 3 cut(s) | 550, 574, 637 |
| BseJI | GATNNNNATC | 2 cut(s) | 32, 636 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 590, 628, 647 |
| BseMI | GCAATG | 1 cut(s) | 382 |
| BseMII | CTCAG | 5 cut(s) | 99, 467, 579, 636, 752 |
| BseNI | ACTGG | 1 cut(s) | 13 |
| BseRI | GAGGAG | 1 cut(s) | 452 |
| BseXI | GCAGC | 5 cut(s) | 354, 607, 610, 664, 667 |
| BsgI | GTGCAG | 1 cut(s) | 37 |
| Bsh1236I | CGCG | 2 cut(s) | 38, 790 |
| Bsh1285I | CGRYCG | 1 cut(s) | 183 |
| BshFI | GGCC | 1 cut(s) | 12 |
| BshTI | ACCGGT | 1 cut(s) | 716 |
| BsiEI | CGRYCG | 1 cut(s) | 183 |
| BsiHKAI | GWGCWC | 2 cut(s) | 457, 762 |
| BsiSI | CCGG | 4 cut(s) | 158, 194, 717, 773 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 590, 628, 647 |
| BsnI | GGCC | 1 cut(s) | 12 |
| Bsp1286I | GDGCHC | 3 cut(s) | 282, 457, 762 |
| Bsp143I | GATC | 5 cut(s) | 27, 33, 180, 507, 769 |
| Bsp68I | TCGCGA | 1 cut(s) | 38 |
| BspACI | CCGC | 2 cut(s) | 776, 790 |
| BspANI | GGCC | 1 cut(s) | 12 |
| BspCNI | CTCAG | 5 cut(s) | 100, 468, 580, 637, 751 |
| BspFNI | CGCG | 2 cut(s) | 38, 790 |
| BspLI | GGNNCC | 1 cut(s) | 281 |
| BspPI | GGATC | 2 cut(s) | 515, 764 |
| BspQI | GCTCTTC | 1 cut(s) | 123 |
| BsrDI | GCAATG | 1 cut(s) | 382 |
| BsrFI | RCCGGY | 1 cut(s) | 716 |
| BsrI | ACTGG | 1 cut(s) | 13 |
| BssAI | RCCGGY | 1 cut(s) | 716 |
| BssMI | GATC | 5 cut(s) | 27, 33, 180, 507, 769 |
| Bst2UI | CCWGG | 1 cut(s) | 347 |
| Bst4CI | ACNGT | 1 cut(s) | 67 |
| Bst6I | CTCTTC | 4 cut(s) | 123, 147, 243, 497 |
| BstC8I | GCNNGC | 2 cut(s) | 515, 603 |
| BstDEI | CTNAG | 5 cut(s) | 108, 476, 588, 645, 738 |
| BstF5I | GGATG | 3 cut(s) | 550, 574, 637 |
| BstFNI | CGCG | 2 cut(s) | 38, 790 |
| BstKTI | GATC | 5 cut(s) | 30, 36, 183, 510, 772 |
| BstMBI | GATC | 5 cut(s) | 27, 33, 180, 507, 769 |
| BstMCI | CGRYCG | 1 cut(s) | 183 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 286, 808 |
| BstNI | CCWGG | 1 cut(s) | 347 |
| BstNSI | RCATGY | 3 cut(s) | 296, 517, 605 |
| BstSCI | CCNGG | 1 cut(s) | 345 |
| BstUI | CGCG | 2 cut(s) | 38, 790 |
| BstV1I | GCAGC | 5 cut(s) | 354, 607, 610, 664, 667 |
| BsuRI | GGCC | 1 cut(s) | 12 |
| BtsCI | GGATG | 3 cut(s) | 550, 574, 637 |
| BtsIMutI | CAGTG | 1 cut(s) | 20 |
| BtuMI | TCGCGA | 1 cut(s) | 38 |
| Cac8I | GCNNGC | 2 cut(s) | 515, 603 |
| Cfr10I | RCCGGY | 1 cut(s) | 716 |
| CseI | GACGC | 2 cut(s) | 734, 796 |
| Csp6I | GTAC | 1 cut(s) | 253 |
| CspAI | ACCGGT | 1 cut(s) | 716 |
| CviAII | CATG | 5 cut(s) | 169, 293, 385, 514, 602 |
| CviQI | GTAC | 1 cut(s) | 253 |
| DdeI | CTNAG | 5 cut(s) | 108, 476, 588, 645, 738 |
| DpnI | GATC | 5 cut(s) | 29, 35, 182, 509, 771 |
| DpnII | GATC | 5 cut(s) | 27, 33, 180, 507, 769 |
| DraI | TTTAAA | 1 cut(s) | 420 |
| EaeI | YGGCCR | 1 cut(s) | 10 |
| Eam1104I | CTCTTC | 4 cut(s) | 123, 147, 243, 497 |
| EarI | CTCTTC | 4 cut(s) | 123, 147, 243, 497 |
| Ecl136II | GAGCTC | 2 cut(s) | 455, 760 |
| Eco24I | GRGCYC | 3 cut(s) | 282, 457, 762 |
| Eco32I | GATATC | 1 cut(s) | 807 |
| Eco53kI | GAGCTC | 2 cut(s) | 455, 760 |
| Eco57I | CTGAAG | 2 cut(s) | 842, 855 |
| EcoICRI | GAGCTC | 2 cut(s) | 455, 760 |
| EcoRII | CCWGG | 1 cut(s) | 345 |
| EcoRV | GATATC | 1 cut(s) | 807 |
| EcoT38I | GRGCYC | 3 cut(s) | 282, 457, 762 |
| FaeI | CATG | 5 cut(s) | 172, 296, 388, 517, 605 |
| FaiI | YATR | 6 cut(s) | 170, 294, 386, 515, 564, 603 |
| FatI | CATG | 5 cut(s) | 168, 292, 384, 513, 601 |
| FblI | GTMKAC | 1 cut(s) | 137 |
| Fnu4HI | GCNGC | 6 cut(s) | 343, 596, 599, 653, 656, 777 |
| FokI | GGATG | 3 cut(s) | 557, 581, 644 |
| FriOI | GRGCYC | 3 cut(s) | 282, 457, 762 |
| Fsp4HI | GCNGC | 6 cut(s) | 343, 596, 599, 653, 656, 777 |
| FspBI | CTAG | 2 cut(s) | 339, 365 |
| GluI | GCNGC | 6 cut(s) | 343, 596, 599, 653, 656, 777 |
| HaeIII | GGCC | 1 cut(s) | 12 |
| HapII | CCGG | 4 cut(s) | 158, 194, 717, 773 |
| HgaI | GACGC | 2 cut(s) | 734, 796 |
| Hin1II | CATG | 5 cut(s) | 172, 296, 388, 517, 605 |
| HinfI | GANTC | 3 cut(s) | 78, 484, 752 |
| HpaII | CCGG | 4 cut(s) | 158, 194, 717, 773 |
| HphI | GGTGA | 1 cut(s) | 304 |
| Hpy166II | GTNNAC | 2 cut(s) | 138, 700 |
| Hpy188I | TCNGA | 6 cut(s) | 741, 757, 764, 822, 835, 850 |
| Hpy188III | TCNNGA | 3 cut(s) | 31, 37, 107 |
| Hpy8I | GTNNAC | 2 cut(s) | 138, 700 |
| Hpy99I | CGWCG | 2 cut(s) | 188, 320 |
| HpyAV | CCTTC | 6 cut(s) | 382, 443, 474, 754, 837, 850 |
| HpyCH4III | ACNGT | 1 cut(s) | 67 |
| HpyCH4IV | ACGT | 1 cut(s) | 186 |
| HpyCH4V | TGCA | 7 cut(s) | 18, 60, 150, 269, 605, 710, 735 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 286, 808 |
| HpyF3I | CTNAG | 5 cut(s) | 108, 476, 588, 645, 738 |
| HpySE526I | ACGT | 1 cut(s) | 186 |
| Hsp92II | CATG | 5 cut(s) | 172, 296, 388, 517, 605 |
| Kzo9I | GATC | 5 cut(s) | 27, 33, 180, 507, 769 |
| LguI | GCTCTTC | 1 cut(s) | 123 |
| LmnI | GCTCC | 3 cut(s) | 285, 452, 765 |
| Lsp1109I | GCAGC | 5 cut(s) | 354, 607, 610, 664, 667 |
| LweI | GCATC | 2 cut(s) | 321, 697 |
| MaeI | CTAG | 2 cut(s) | 339, 365 |
| MaeII | ACGT | 1 cut(s) | 186 |
| MaeIII | GTNAC | 1 cut(s) | 209 |
| MalI | GATC | 5 cut(s) | 29, 35, 182, 509, 771 |
| MboI | GATC | 5 cut(s) | 27, 33, 180, 507, 769 |
| MboII | GAAGA | 7 cut(s) | 100, 134, 140, 260, 511, 514, 538 |
| MfeI | CAATTG | 1 cut(s) | 113 |
| MhlI | GDGCHC | 3 cut(s) | 282, 457, 762 |
| MlsI | TGGCCA | 1 cut(s) | 12 |
| MluCI | AATT | 8 cut(s) | 6, 113, 152, 442, 536, 551, 611, 669 |
| MluNI | TGGCCA | 1 cut(s) | 12 |
| MmeI | TCCRAC | 1 cut(s) | 285 |
| Mox20I | TGGCCA | 1 cut(s) | 12 |
| MscI | TGGCCA | 1 cut(s) | 12 |
| MseI | TTAA | 1 cut(s) | 419 |
| Msp20I | TGGCCA | 1 cut(s) | 12 |
| MspI | CCGG | 4 cut(s) | 158, 194, 717, 773 |
| MspR9I | CCNGG | 1 cut(s) | 347 |
| MunI | CAATTG | 1 cut(s) | 113 |
| MvaI | CCWGG | 1 cut(s) | 347 |
| MvnI | CGCG | 2 cut(s) | 38, 790 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 286, 808 |
| NdeII | GATC | 5 cut(s) | 27, 33, 180, 507, 769 |
| NlaIII | CATG | 5 cut(s) | 172, 296, 388, 517, 605 |
| NlaIV | GGNNCC | 1 cut(s) | 281 |
| NmuCI | GTSAC | 1 cut(s) | 209 |
| NruI | TCGCGA | 1 cut(s) | 38 |
| NspI | RCATGY | 3 cut(s) | 296, 517, 605 |
| PaeI | GCATGC | 2 cut(s) | 517, 605 |
| PciSI | GCTCTTC | 1 cut(s) | 123 |
| PfeI | GAWTC | 3 cut(s) | 78, 484, 752 |
| PinAI | ACCGGT | 1 cut(s) | 716 |
| PkrI | GCNGC | 6 cut(s) | 344, 597, 600, 654, 657, 778 |
| Ple19I | CGATCG | 1 cut(s) | 183 |
| Psp124BI | GAGCTC | 2 cut(s) | 457, 762 |
| Psp6I | CCWGG | 1 cut(s) | 345 |
| PspGI | CCWGG | 1 cut(s) | 345 |
| PspN4I | GGNNCC | 1 cut(s) | 281 |
| PvuI | CGATCG | 1 cut(s) | 183 |
| RruI | TCGCGA | 1 cut(s) | 38 |
| RsaI | GTAC | 1 cut(s) | 254 |
| RsaNI | GTAC | 1 cut(s) | 253 |
| SacI | GAGCTC | 2 cut(s) | 457, 762 |
| SapI | GCTCTTC | 1 cut(s) | 123 |
| SaqAI | TTAA | 1 cut(s) | 419 |
| SatI | GCNGC | 6 cut(s) | 343, 596, 599, 653, 656, 777 |
| Sau3AI | GATC | 5 cut(s) | 27, 33, 180, 507, 769 |
| ScrFI | CCNGG | 1 cut(s) | 347 |
| SduI | GDGCHC | 3 cut(s) | 282, 457, 762 |
| SfaNI | GCATC | 2 cut(s) | 321, 697 |
| SphI | GCATGC | 2 cut(s) | 517, 605 |
| Sse9I | AATT | 8 cut(s) | 6, 113, 152, 442, 536, 551, 611, 669 |
| SsiI | CCGC | 2 cut(s) | 776, 790 |
| SspI | AATATT | 1 cut(s) | 323 |
| SspMI | CTAG | 2 cut(s) | 339, 365 |
| SstI | GAGCTC | 2 cut(s) | 457, 762 |
| StyD4I | CCNGG | 1 cut(s) | 345 |
| TaaI | ACNGT | 1 cut(s) | 67 |
| TaiI | ACGT | 1 cut(s) | 189 |
| TaqI | TCGA | 7 cut(s) | 26, 53, 72, 183, 299, 408, 520 |
| TasI | AATT | 8 cut(s) | 6, 113, 152, 442, 536, 551, 611, 669 |
| TatI | WGTACW | 1 cut(s) | 252 |
| TauI | GCSGC | 1 cut(s) | 779 |
| TfiI | GAWTC | 3 cut(s) | 78, 484, 752 |
| Tru1I | TTAA | 1 cut(s) | 419 |
| Tru9I | TTAA | 1 cut(s) | 419 |
| TscAI | CASTG | 1 cut(s) | 20 |
| TseFI | GTSAC | 1 cut(s) | 209 |
| TseI | GCWGC | 5 cut(s) | 342, 595, 598, 652, 655 |
| Tsp45I | GTSAC | 1 cut(s) | 209 |
| TspDTI | ATGAA | 5 cut(s) | 368, 393, 401, 446, 585 |
| TspRI | CASTG | 1 cut(s) | 20 |
| XapI | RAATTY | 1 cut(s) | 551 |
| XceI | RCATGY | 3 cut(s) | 296, 517, 605 |
| XmiI | GTMKAC | 1 cut(s) | 137 |
| XspI | CTAG | 2 cut(s) | 339, 365 |