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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 440 |
| Acc16I | TGCGCA | 1 cut(s) | 1052 |
| Acc36I | ACCTGC | 1 cut(s) | 440 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 260 |
| AclWI | GGATC | 1 cut(s) | 775 |
| AcoI | YGGCCR | 1 cut(s) | 156 |
| AcsI | RAATTY | 1 cut(s) | 1175 |
| AcuI | CTGAAG | 3 cut(s) | 243, 555, 1002 |
| AfaI | GTAC | 1 cut(s) | 29 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 260, 482 |
| AjnI | CCWGG | 1 cut(s) | 285 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 320, 352 |
| AluBI | AGCT | 8 cut(s) | 64, 108, 221, 356, 395, 493, 755, 1285 |
| AluI | AGCT | 8 cut(s) | 64, 108, 221, 356, 395, 493, 755, 1285 |
| Alw21I | GWGCWC | 2 cut(s) | 397, 1301 |
| Alw26I | GTCTC | 2 cut(s) | 173, 739 |
| Alw44I | GTGCAC | 1 cut(s) | 1297 |
| AlwI | GGATC | 1 cut(s) | 775 |
| AoxI | GGCC | 1 cut(s) | 156 |
| ApaLI | GTGCAC | 1 cut(s) | 1297 |
| ApeKI | GCWGC | 3 cut(s) | 282, 487, 490 |
| ApoI | RAATTY | 1 cut(s) | 1175 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 83, 115 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1032 |
| AspLEI | GCGC | 1 cut(s) | 1053 |
| AsuHPI | GGTGA | 2 cut(s) | 275, 885 |
| BaeGI | GKGCMC | 1 cut(s) | 1301 |
| BanII | GRGCYC | 1 cut(s) | 397 |
| BbsI | GAAGAC | 3 cut(s) | 600, 990, 1202 |
| Bbv12I | GWGCWC | 2 cut(s) | 397, 1301 |
| BbvI | GCAGC | 3 cut(s) | 294, 499, 502 |
| BccI | CCATC | 1 cut(s) | 707 |
| BciT130I | CCWGG | 1 cut(s) | 287 |
| BcoDI | GTCTC | 2 cut(s) | 173, 739 |
| BfaI | CTAG | 1 cut(s) | 279 |
| BfmI | CTRYAG | 1 cut(s) | 437 |
| BfuAI | ACCTGC | 1 cut(s) | 440 |
| BisI | GCNGC | 3 cut(s) | 283, 488, 491 |
| BlsI | GCNGC | 3 cut(s) | 284, 489, 492 |
| Bme1390I | CCNGG | 1 cut(s) | 287 |
| BmiI | GGNNCC | 1 cut(s) | 1169 |
| BmrFI | CCNGG | 1 cut(s) | 287 |
| BmsI | GCATC | 3 cut(s) | 261, 532, 1116 |
| BpiI | GAAGAC | 3 cut(s) | 600, 990, 1202 |
| BpmI | CTGGAG | 3 cut(s) | 326, 465, 670 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1004 |
| BsaBI | GATNNNNATC | 1 cut(s) | 471 |
| BsaJI | CCNNGG | 1 cut(s) | 847 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 260, 482 |
| Bse1I | ACTGG | 1 cut(s) | 309 |
| Bse3DI | GCAATG | 1 cut(s) | 322 |
| Bse8I | GATNNNNATC | 1 cut(s) | 471 |
| BseBI | CCWGG | 1 cut(s) | 287 |
| BseDI | CCNNGG | 1 cut(s) | 847 |
| BseGI | GGATG | 8 cut(s) | 190, 202, 241, 276, 472, 718, 963, 1131 |
| BseJI | GATNNNNATC | 1 cut(s) | 471 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 260, 482 |
| BseMI | GCAATG | 1 cut(s) | 322 |
| BseMII | CTCAG | 1 cut(s) | 644 |
| BseNI | ACTGG | 1 cut(s) | 309 |
| BseRI | GAGGAG | 4 cut(s) | 191, 227, 392, 1180 |
| BseSI | GKGCMC | 1 cut(s) | 1301 |
| BseXI | GCAGC | 3 cut(s) | 294, 499, 502 |
| BshFI | GGCC | 1 cut(s) | 158 |
| BsiHKAI | GWGCWC | 2 cut(s) | 397, 1301 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 260, 482 |
| BsmAI | GTCTC | 2 cut(s) | 173, 739 |
| BsmBI | CGTCTC | 1 cut(s) | 173 |
| BsmI | GAATGC | 2 cut(s) | 590, 1096 |
| BsnI | GGCC | 1 cut(s) | 158 |
| Bsp1286I | GDGCHC | 2 cut(s) | 397, 1301 |
| Bsp143I | GATC | 1 cut(s) | 767 |
| BspANI | GGCC | 1 cut(s) | 158 |
| BspCNI | CTCAG | 1 cut(s) | 645 |
| BspHI | TCATGA | 1 cut(s) | 855 |
| BspLI | GGNNCC | 1 cut(s) | 1169 |
| BspMI | ACCTGC | 1 cut(s) | 440 |
| BspPI | GGATC | 1 cut(s) | 775 |
| BsrDI | GCAATG | 1 cut(s) | 322 |
| BsrI | ACTGG | 1 cut(s) | 309 |
| BssECI | CCNNGG | 1 cut(s) | 847 |
| BssMI | GATC | 1 cut(s) | 767 |
| BssT1I | CCWWGG | 1 cut(s) | 847 |
| Bst2UI | CCWGG | 1 cut(s) | 287 |
| Bst4CI | ACNGT | 3 cut(s) | 131, 705, 723 |
| Bst6I | CTCTTC | 5 cut(s) | 18, 132, 186, 225, 606 |
| BstC8I | GCNNGC | 2 cut(s) | 247, 408 |
| BstDEI | CTNAG | 3 cut(s) | 653, 940, 1004 |
| BstF5I | GGATG | 8 cut(s) | 190, 202, 241, 276, 472, 718, 963, 1131 |
| BstHHI | GCGC | 1 cut(s) | 1053 |
| BstKTI | GATC | 1 cut(s) | 770 |
| BstMAI | GTCTC | 2 cut(s) | 173, 739 |
| BstMBI | GATC | 1 cut(s) | 767 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 61 |
| BstNI | CCWGG | 1 cut(s) | 287 |
| BstNSI | RCATGY | 2 cut(s) | 71, 410 |
| BstSCI | CCNGG | 1 cut(s) | 285 |
| BstSFI | CTRYAG | 1 cut(s) | 437 |
| BstSLI | GKGCMC | 1 cut(s) | 1301 |
| BstV1I | GCAGC | 3 cut(s) | 294, 499, 502 |
| BstV2I | GAAGAC | 3 cut(s) | 600, 990, 1202 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1102 |
| BsuRI | GGCC | 1 cut(s) | 158 |
| BtsCI | GGATG | 8 cut(s) | 190, 202, 241, 276, 472, 718, 963, 1131 |
| BtsI | GCAGTG | 2 cut(s) | 946, 1119 |
| BtsIMutI | CAGTG | 7 cut(s) | 87, 136, 537, 579, 885, 946, 1119 |
| BveI | ACCTGC | 1 cut(s) | 440 |
| Cac8I | GCNNGC | 2 cut(s) | 247, 408 |
| CciI | TCATGA | 1 cut(s) | 855 |
| CfoI | GCGC | 1 cut(s) | 1053 |
| Csp6I | GTAC | 1 cut(s) | 28 |
| CviAII | CATG | 5 cut(s) | 68, 325, 407, 856, 928 |
| CviQI | GTAC | 1 cut(s) | 28 |
| DdeI | CTNAG | 3 cut(s) | 653, 940, 1004 |
| DpnI | GATC | 1 cut(s) | 769 |
| DpnII | GATC | 1 cut(s) | 767 |
| DraI | TTTAAA | 1 cut(s) | 360 |
| EaeI | YGGCCR | 1 cut(s) | 156 |
| Eam1104I | CTCTTC | 5 cut(s) | 18, 132, 186, 225, 606 |
| EarI | CTCTTC | 5 cut(s) | 18, 132, 186, 225, 606 |
| Ecl136II | GAGCTC | 1 cut(s) | 395 |
| Eco130I | CCWWGG | 1 cut(s) | 847 |
| Eco24I | GRGCYC | 1 cut(s) | 397 |
| Eco53kI | GAGCTC | 1 cut(s) | 395 |
| Eco57I | CTGAAG | 3 cut(s) | 243, 555, 1002 |
| EcoICRI | GAGCTC | 1 cut(s) | 395 |
| EcoRII | CCWGG | 1 cut(s) | 285 |
| EcoT14I | CCWWGG | 1 cut(s) | 847 |
| EcoT22I | ATGCAT | 1 cut(s) | 408 |
| EcoT38I | GRGCYC | 1 cut(s) | 397 |
| ErhI | CCWWGG | 1 cut(s) | 847 |
| Esp3I | CGTCTC | 1 cut(s) | 173 |
| FaeI | CATG | 5 cut(s) | 71, 328, 410, 859, 931 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 744, 776 |
| FatI | CATG | 5 cut(s) | 67, 324, 406, 855, 927 |
| FauNDI | CATATG | 1 cut(s) | 865 |
| Fnu4HI | GCNGC | 3 cut(s) | 283, 488, 491 |
| FokI | GGATG | 8 cut(s) | 197, 209, 248, 283, 479, 725, 950, 1138 |
| FriOI | GRGCYC | 1 cut(s) | 397 |
| Fsp4HI | GCNGC | 3 cut(s) | 283, 488, 491 |
| FspBI | CTAG | 1 cut(s) | 279 |
| FspI | TGCGCA | 1 cut(s) | 1052 |
| GlaI | GCGC | 1 cut(s) | 1052 |
| GluI | GCNGC | 3 cut(s) | 283, 488, 491 |
| GsuI | CTGGAG | 3 cut(s) | 326, 465, 670 |
| HaeIII | GGCC | 1 cut(s) | 158 |
| HhaI | GCGC | 1 cut(s) | 1053 |
| Hin1II | CATG | 5 cut(s) | 71, 328, 410, 859, 931 |
| Hin6I | GCGC | 1 cut(s) | 1051 |
| HinP1I | GCGC | 1 cut(s) | 1051 |
| HindIII | AAGCTT | 1 cut(s) | 354 |
| HinfI | GANTC | 6 cut(s) | 416, 683, 852, 875, 934, 1033 |
| HphI | GGTGA | 2 cut(s) | 275, 885 |
| Hpy166II | GTNNAC | 2 cut(s) | 535, 1299 |
| Hpy188I | TCNGA | 3 cut(s) | 60, 421, 1184 |
| Hpy188III | TCNNGA | 2 cut(s) | 856, 1067 |
| Hpy8I | GTNNAC | 2 cut(s) | 535, 1299 |
| HpyAV | CCTTC | 4 cut(s) | 322, 383, 758, 1012 |
| HpyCH4III | ACNGT | 3 cut(s) | 131, 705, 723 |
| HpyCH4IV | ACGT | 2 cut(s) | 786, 1121 |
| HpyCH4V | TGCA | 7 cut(s) | 44, 406, 410, 545, 1147, 1235, 1299 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 61 |
| HpyF3I | CTNAG | 3 cut(s) | 653, 940, 1004 |
| HpySE526I | ACGT | 2 cut(s) | 786, 1121 |
| Hsp92II | CATG | 5 cut(s) | 71, 328, 410, 859, 931 |
| HspAI | GCGC | 1 cut(s) | 1051 |
| Kzo9I | GATC | 1 cut(s) | 767 |
| LmnI | GCTCC | 3 cut(s) | 392, 446, 1167 |
| Lsp1109I | GCAGC | 3 cut(s) | 294, 499, 502 |
| LweI | GCATC | 3 cut(s) | 261, 532, 1116 |
| MaeI | CTAG | 1 cut(s) | 279 |
| MaeII | ACGT | 2 cut(s) | 786, 1121 |
| MaeIII | GTNAC | 1 cut(s) | 1114 |
| MalI | GATC | 1 cut(s) | 769 |
| MboI | GATC | 1 cut(s) | 767 |
| MhlI | GDGCHC | 2 cut(s) | 397, 1301 |
| MluCI | AATT | 3 cut(s) | 382, 504, 1175 |
| MlyI | GAGTC | 2 cut(s) | 677, 928 |
| MmeI | TCCRAC | 4 cut(s) | 60, 318, 807, 852 |
| Mph1103I | ATGCAT | 1 cut(s) | 408 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1032 |
| MseI | TTAA | 2 cut(s) | 359, 1280 |
| MspR9I | CCNGG | 1 cut(s) | 287 |
| Mva1269I | GAATGC | 2 cut(s) | 590, 1096 |
| MvaI | CCWGG | 1 cut(s) | 287 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 61 |
| NdeI | CATATG | 1 cut(s) | 865 |
| NdeII | GATC | 1 cut(s) | 767 |
| NlaIII | CATG | 5 cut(s) | 71, 328, 410, 859, 931 |
| NlaIV | GGNNCC | 1 cut(s) | 1169 |
| NmuCI | GTSAC | 1 cut(s) | 1114 |
| NsbI | TGCGCA | 1 cut(s) | 1052 |
| NsiI | ATGCAT | 1 cut(s) | 408 |
| NspI | RCATGY | 2 cut(s) | 71, 410 |
| PaeI | GCATGC | 1 cut(s) | 410 |
| PagI | TCATGA | 1 cut(s) | 855 |
| PaqCI | CACCTGC | 1 cut(s) | 440 |
| PctI | GAATGC | 2 cut(s) | 590, 1096 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1032 |
| PfeI | GAWTC | 4 cut(s) | 416, 852, 875, 1033 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 260 |
| PkrI | GCNGC | 3 cut(s) | 284, 489, 492 |
| PleI | GAGTC | 2 cut(s) | 677, 928 |
| PpsI | GAGTC | 2 cut(s) | 677, 928 |
| Psp124BI | GAGCTC | 1 cut(s) | 397 |
| Psp6I | CCWGG | 1 cut(s) | 285 |
| PspGI | CCWGG | 1 cut(s) | 285 |
| PspN4I | GGNNCC | 1 cut(s) | 1169 |
| RsaI | GTAC | 1 cut(s) | 29 |
| RsaNI | GTAC | 1 cut(s) | 28 |
| SacI | GAGCTC | 1 cut(s) | 397 |
| SaqAI | TTAA | 2 cut(s) | 359, 1280 |
| SatI | GCNGC | 3 cut(s) | 283, 488, 491 |
| Sau3AI | GATC | 1 cut(s) | 767 |
| SchI | GAGTC | 2 cut(s) | 677, 928 |
| ScrFI | CCNGG | 1 cut(s) | 287 |
| SduI | GDGCHC | 2 cut(s) | 397, 1301 |
| SfaNI | GCATC | 3 cut(s) | 261, 532, 1116 |
| SfcI | CTRYAG | 1 cut(s) | 437 |
| SphI | GCATGC | 1 cut(s) | 410 |
| Sse9I | AATT | 3 cut(s) | 382, 504, 1175 |
| SspMI | CTAG | 1 cut(s) | 279 |
| SstI | GAGCTC | 1 cut(s) | 397 |
| StyD4I | CCNGG | 1 cut(s) | 285 |
| StyI | CCWWGG | 1 cut(s) | 847 |
| TaaI | ACNGT | 3 cut(s) | 131, 705, 723 |
| TaiI | ACGT | 2 cut(s) | 789, 1124 |
| TaqII | GACCGA | 1 cut(s) | 566 |
| TasI | AATT | 3 cut(s) | 382, 504, 1175 |
| TatI | WGTACW | 1 cut(s) | 27 |
| TfiI | GAWTC | 4 cut(s) | 416, 852, 875, 1033 |
| Tru1I | TTAA | 2 cut(s) | 359, 1280 |
| Tru9I | TTAA | 2 cut(s) | 359, 1280 |
| TscAI | CASTG | 7 cut(s) | 94, 136, 544, 579, 885, 953, 1119 |
| TseFI | GTSAC | 1 cut(s) | 1114 |
| TseI | GCWGC | 3 cut(s) | 282, 487, 490 |
| Tsp45I | GTSAC | 1 cut(s) | 1114 |
| TspGWI | ACGGA | 1 cut(s) | 197 |
| TspRI | CASTG | 7 cut(s) | 94, 136, 544, 579, 885, 953, 1119 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 260 |
| VneI | GTGCAC | 1 cut(s) | 1297 |
| XapI | RAATTY | 1 cut(s) | 1175 |
| XceI | RCATGY | 2 cut(s) | 71, 410 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1032 |
| XspI | CTAG | 1 cut(s) | 279 |
| Zsp2I | ATGCAT | 1 cut(s) | 408 |