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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 225 |
| AccB1I | GGYRCC | 1 cut(s) | 554 |
| AccI | GTMKAC | 1 cut(s) | 43 |
| AcsI | RAATTY | 1 cut(s) | 565 |
| AcyI | GRCGYC | 1 cut(s) | 222 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 78, 463 |
| AgsI | TTSAA | 5 cut(s) | 55, 112, 307, 322, 436 |
| AjnI | CCWGG | 2 cut(s) | 91, 533 |
| AluBI | AGCT | 2 cut(s) | 284, 325 |
| AluI | AGCT | 2 cut(s) | 284, 325 |
| Alw21I | GWGCWC | 1 cut(s) | 421 |
| Alw26I | GTCTC | 1 cut(s) | 9 |
| Alw44I | GTGCAC | 1 cut(s) | 417 |
| ApaLI | GTGCAC | 1 cut(s) | 417 |
| ApoI | RAATTY | 1 cut(s) | 565 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 359, 391 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 491 |
| AxyI | CCTNAGG | 1 cut(s) | 517 |
| BaeGI | GKGCMC | 1 cut(s) | 421 |
| BanI | GGYRCC | 1 cut(s) | 554 |
| BbsI | GAAGAC | 1 cut(s) | 136 |
| Bbv12I | GWGCWC | 1 cut(s) | 421 |
| BccI | CCATC | 2 cut(s) | 156, 400 |
| BciT130I | CCWGG | 2 cut(s) | 93, 535 |
| BciVI | GTATCC | 2 cut(s) | 249, 508 |
| BclI | TGATCA | 1 cut(s) | 84 |
| BcoDI | GTCTC | 1 cut(s) | 9 |
| BfmI | CTRYAG | 1 cut(s) | 44 |
| BfuI | GTATCC | 2 cut(s) | 249, 508 |
| Bme1390I | CCNGG | 2 cut(s) | 93, 535 |
| BmiI | GGNNCC | 1 cut(s) | 556 |
| BmrFI | CCNGG | 2 cut(s) | 93, 535 |
| BmsI | GCATC | 2 cut(s) | 373, 479 |
| BpiI | GAAGAC | 1 cut(s) | 136 |
| BsaHI | GRCGYC | 1 cut(s) | 222 |
| BsaI | GGTCTC | 1 cut(s) | 9 |
| BsaJI | CCNNGG | 1 cut(s) | 292 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 78, 463 |
| Bse1I | ACTGG | 1 cut(s) | 270 |
| Bse21I | CCTNAGG | 1 cut(s) | 517 |
| BseBI | CCWGG | 2 cut(s) | 93, 535 |
| BseDI | CCNNGG | 1 cut(s) | 292 |
| BseGI | GGATG | 2 cut(s) | 87, 366 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 78, 463 |
| BseMII | CTCAG | 1 cut(s) | 531 |
| BseNI | ACTGG | 1 cut(s) | 270 |
| BseSI | GKGCMC | 1 cut(s) | 421 |
| BsgI | GTGCAG | 1 cut(s) | 496 |
| BshNI | GGYRCC | 1 cut(s) | 554 |
| BsiHKAI | GWGCWC | 1 cut(s) | 421 |
| BslFI | GGGAC | 1 cut(s) | 440 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 78, 463 |
| BsmAI | GTCTC | 1 cut(s) | 9 |
| BsmFI | GGGAC | 1 cut(s) | 440 |
| BsmI | GAATGC | 2 cut(s) | 179, 303 |
| Bso31I | GGTCTC | 1 cut(s) | 9 |
| Bsp1286I | GDGCHC | 1 cut(s) | 421 |
| Bsp143I | GATC | 3 cut(s) | 84, 132, 363 |
| BspCNI | CTCAG | 1 cut(s) | 530 |
| BspHI | TCATGA | 1 cut(s) | 483 |
| BspLI | GGNNCC | 1 cut(s) | 556 |
| BspT107I | GGYRCC | 1 cut(s) | 554 |
| BspTNI | GGTCTC | 1 cut(s) | 9 |
| BsrI | ACTGG | 1 cut(s) | 270 |
| BssECI | CCNNGG | 1 cut(s) | 292 |
| BssMI | GATC | 3 cut(s) | 84, 132, 363 |
| BssNI | GRCGYC | 1 cut(s) | 222 |
| BssT1I | CCWWGG | 1 cut(s) | 292 |
| Bst2UI | CCWGG | 2 cut(s) | 93, 535 |
| Bst4CI | ACNGT | 2 cut(s) | 30, 48 |
| BstACI | GRCGYC | 1 cut(s) | 222 |
| BstDEI | CTNAG | 1 cut(s) | 517 |
| BstF5I | GGATG | 2 cut(s) | 87, 366 |
| BstKTI | GATC | 3 cut(s) | 87, 135, 366 |
| BstMAI | GTCTC | 1 cut(s) | 9 |
| BstMBI | GATC | 3 cut(s) | 84, 132, 363 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 331 |
| BstNI | CCWGG | 2 cut(s) | 93, 535 |
| BstSCI | CCNGG | 2 cut(s) | 91, 533 |
| BstSFI | CTRYAG | 1 cut(s) | 44 |
| BstSLI | GKGCMC | 1 cut(s) | 421 |
| BstV2I | GAAGAC | 1 cut(s) | 136 |
| Bsu36I | CCTNAGG | 1 cut(s) | 517 |
| BsuI | GTATCC | 2 cut(s) | 249, 508 |
| BtgZI | GCGATG | 2 cut(s) | 419, 456 |
| BtsCI | GGATG | 2 cut(s) | 87, 366 |
| BtsIMutI | CAGTG | 1 cut(s) | 277 |
| CciI | TCATGA | 1 cut(s) | 483 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 447, 482 |
| CviAII | CATG | 1 cut(s) | 484 |
| CviJI | RGCY | 4 cut(s) | 5, 284, 325, 346 |
| CviKI_1 | RGCY | 4 cut(s) | 5, 284, 325, 346 |
| DdeI | CTNAG | 1 cut(s) | 517 |
| DpnI | GATC | 3 cut(s) | 86, 134, 365 |
| DpnII | GATC | 3 cut(s) | 84, 132, 363 |
| DraI | TTTAAA | 1 cut(s) | 162 |
| Eco130I | CCWWGG | 1 cut(s) | 292 |
| Eco31I | GGTCTC | 1 cut(s) | 9 |
| Eco81I | CCTNAGG | 1 cut(s) | 517 |
| EcoRI | GAATTC | 1 cut(s) | 565 |
| EcoRII | CCWGG | 2 cut(s) | 91, 533 |
| EcoT14I | CCWWGG | 1 cut(s) | 292 |
| ErhI | CCWWGG | 1 cut(s) | 292 |
| FaeI | CATG | 1 cut(s) | 487 |
| FaiI | YATR | 7 cut(s) | 12, 33, 141, 201, 203, 217, 485 |
| FaqI | GGGAC | 1 cut(s) | 440 |
| FatI | CATG | 1 cut(s) | 483 |
| FbaI | TGATCA | 1 cut(s) | 84 |
| FblI | GTMKAC | 1 cut(s) | 43 |
| FokI | GGATG | 2 cut(s) | 94, 373 |
| Hin1I | GRCGYC | 1 cut(s) | 222 |
| Hin1II | CATG | 1 cut(s) | 487 |
| HinfI | GANTC | 4 cut(s) | 312, 428, 448, 487 |
| Hpy166II | GTNNAC | 2 cut(s) | 44, 419 |
| Hpy188I | TCNGA | 1 cut(s) | 231 |
| Hpy188III | TCNNGA | 2 cut(s) | 211, 484 |
| Hpy8I | GTNNAC | 2 cut(s) | 44, 419 |
| Hpy99I | CGWCG | 1 cut(s) | 224 |
| HpyAV | CCTTC | 1 cut(s) | 511 |
| HpyCH4III | ACNGT | 2 cut(s) | 30, 48 |
| HpyCH4IV | ACGT | 1 cut(s) | 222 |
| HpyCH4V | TGCA | 4 cut(s) | 177, 386, 419, 513 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 331 |
| HpyF3I | CTNAG | 1 cut(s) | 517 |
| HpySE526I | ACGT | 1 cut(s) | 222 |
| Hsp92I | GRCGYC | 1 cut(s) | 222 |
| Hsp92II | CATG | 1 cut(s) | 487 |
| Ksp22I | TGATCA | 1 cut(s) | 84 |
| Kzo9I | GATC | 3 cut(s) | 84, 132, 363 |
| LpnPI | CCDG | 9 cut(s) | 78, 105, 112, 137, 283, 353, 504, 520, 547 |
| LweI | GCATC | 2 cut(s) | 373, 479 |
| MaeII | ACGT | 1 cut(s) | 222 |
| MaeIII | GTNAC | 2 cut(s) | 313, 394 |
| MalI | GATC | 3 cut(s) | 86, 134, 365 |
| MboI | GATC | 3 cut(s) | 84, 132, 363 |
| MboII | GAAGA | 4 cut(s) | 73, 136, 287, 364 |
| MhlI | GDGCHC | 1 cut(s) | 421 |
| MluCI | AATT | 3 cut(s) | 477, 549, 565 |
| MlyI | GAGTC | 1 cut(s) | 321 |
| MnlI | CCTC | 4 cut(s) | 99, 184, 457, 526 |
| MroXI | GAANNNNTTC | 1 cut(s) | 491 |
| MseI | TTAA | 1 cut(s) | 161 |
| MspR9I | CCNGG | 2 cut(s) | 93, 535 |
| Mva1269I | GAATGC | 2 cut(s) | 179, 303 |
| MvaI | CCWGG | 2 cut(s) | 93, 535 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 331 |
| NdeII | GATC | 3 cut(s) | 84, 132, 363 |
| NlaIII | CATG | 1 cut(s) | 487 |
| NlaIV | GGNNCC | 1 cut(s) | 556 |
| NmuCI | GTSAC | 2 cut(s) | 313, 394 |
| PagI | TCATGA | 1 cut(s) | 483 |
| PctI | GAATGC | 2 cut(s) | 179, 303 |
| PdmI | GAANNNNTTC | 1 cut(s) | 491 |
| PfeI | GAWTC | 3 cut(s) | 428, 448, 487 |
| PfoI | TCCNGGA | 1 cut(s) | 533 |
| PleI | GAGTC | 1 cut(s) | 320 |
| PpsI | GAGTC | 1 cut(s) | 320 |
| Psp6I | CCWGG | 2 cut(s) | 91, 533 |
| PspGI | CCWGG | 2 cut(s) | 91, 533 |
| PspN4I | GGNNCC | 1 cut(s) | 556 |
| SaqAI | TTAA | 1 cut(s) | 161 |
| Sau3AI | GATC | 3 cut(s) | 84, 132, 363 |
| SchI | GAGTC | 1 cut(s) | 321 |
| ScrFI | CCNGG | 2 cut(s) | 93, 535 |
| SduI | GDGCHC | 1 cut(s) | 421 |
| SetI | ASST | 9 cut(s) | 74, 97, 110, 225, 286, 327, 468, 518, 523 |
| SfaNI | GCATC | 2 cut(s) | 373, 479 |
| SfcI | CTRYAG | 1 cut(s) | 44 |
| Sse9I | AATT | 3 cut(s) | 477, 549, 565 |
| StyD4I | CCNGG | 2 cut(s) | 91, 533 |
| StyI | CCWWGG | 1 cut(s) | 292 |
| TaaI | ACNGT | 2 cut(s) | 30, 48 |
| TaiI | ACGT | 1 cut(s) | 225 |
| TaqI | TCGA | 2 cut(s) | 366, 411 |
| TaqII | GACCGA | 1 cut(s) | 33 |
| TasI | AATT | 3 cut(s) | 477, 549, 565 |
| TfiI | GAWTC | 3 cut(s) | 428, 448, 487 |
| Tru1I | TTAA | 1 cut(s) | 161 |
| Tru9I | TTAA | 1 cut(s) | 161 |
| TscAI | CASTG | 1 cut(s) | 277 |
| TseFI | GTSAC | 2 cut(s) | 313, 394 |
| Tsp45I | GTSAC | 2 cut(s) | 313, 394 |
| TspDTI | ATGAA | 4 cut(s) | 80, 186, 188, 500 |
| TspRI | CASTG | 1 cut(s) | 277 |
| VneI | GTGCAC | 1 cut(s) | 417 |
| XapI | RAATTY | 1 cut(s) | 565 |
| XmiI | GTMKAC | 1 cut(s) | 43 |
| XmnI | GAANNNNTTC | 1 cut(s) | 491 |
| ZraI | GACGTC | 1 cut(s) | 223 |