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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 242 |
| AatII | GACGTC | 1 cut(s) | 597 |
| AccB1I | GGYRCC | 1 cut(s) | 149 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 404 |
| AccI | GTMKAC | 1 cut(s) | 298 |
| AciI | CCGC | 1 cut(s) | 266 |
| AcsI | RAATTY | 1 cut(s) | 160 |
| AcyI | GRCGYC | 1 cut(s) | 594 |
| AdeI | CACNNNGTG | 1 cut(s) | 114 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 58, 136, 404 |
| AgsI | TTSAA | 2 cut(s) | 31, 541 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 662 |
| AluBI | AGCT | 3 cut(s) | 373, 439, 661 |
| AluI | AGCT | 3 cut(s) | 373, 439, 661 |
| ApeKI | GCWGC | 1 cut(s) | 604 |
| ApoI | RAATTY | 1 cut(s) | 160 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 467, 499 |
| AsuC2I | CCSGG | 1 cut(s) | 130 |
| AsuNHI | GCTAGC | 1 cut(s) | 439 |
| BanI | GGYRCC | 1 cut(s) | 149 |
| BauI | CACGAG | 1 cut(s) | 112 |
| BbsI | GAAGAC | 4 cut(s) | 240, 314, 390, 498 |
| BbvI | GCAGC | 1 cut(s) | 616 |
| BccI | CCATC | 1 cut(s) | 210 |
| BcnI | CCSGG | 1 cut(s) | 130 |
| BfaI | CTAG | 1 cut(s) | 440 |
| BglII | AGATCT | 1 cut(s) | 519 |
| BisI | GCNGC | 2 cut(s) | 266, 605 |
| BlsI | GCNGC | 2 cut(s) | 267, 606 |
| Bme1390I | CCNGG | 1 cut(s) | 130 |
| BmiI | GGNNCC | 1 cut(s) | 151 |
| BmrFI | CCNGG | 1 cut(s) | 130 |
| BmsI | GCATC | 2 cut(s) | 74, 368 |
| BmtI | GCTAGC | 1 cut(s) | 443 |
| BpiI | GAAGAC | 4 cut(s) | 240, 314, 390, 498 |
| Bpu10I | CCTNAGC | 1 cut(s) | 374 |
| BpuMI | CCSGG | 1 cut(s) | 130 |
| BsaBI | GATNNNNATC | 1 cut(s) | 518 |
| BsaHI | GRCGYC | 1 cut(s) | 594 |
| BsaJI | CCNNGG | 1 cut(s) | 189 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 58, 136, 404 |
| Bse3DI | GCAATG | 1 cut(s) | 329 |
| Bse8I | GATNNNNATC | 1 cut(s) | 518 |
| BseDI | CCNNGG | 1 cut(s) | 189 |
| BseGI | GGATG | 1 cut(s) | 370 |
| BseJI | GATNNNNATC | 1 cut(s) | 518 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 58, 136, 404 |
| BseMI | GCAATG | 1 cut(s) | 329 |
| BseRI | GAGGAG | 1 cut(s) | 366 |
| BseXI | GCAGC | 1 cut(s) | 616 |
| BsgI | GTGCAG | 1 cut(s) | 191 |
| BshNI | GGYRCC | 1 cut(s) | 149 |
| BsiSI | CCGG | 1 cut(s) | 130 |
| BslFI | GGGAC | 2 cut(s) | 35, 112 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 58, 136, 404 |
| BsmFI | GGGAC | 2 cut(s) | 35, 112 |
| Bsp143I | GATC | 1 cut(s) | 519 |
| BspACI | CCGC | 1 cut(s) | 266 |
| BspHI | TCATGA | 1 cut(s) | 78 |
| BspLI | GGNNCC | 1 cut(s) | 151 |
| BspOI | GCTAGC | 1 cut(s) | 443 |
| BspQI | GCTCTTC | 1 cut(s) | 363 |
| BspT107I | GGYRCC | 1 cut(s) | 149 |
| BsrDI | GCAATG | 1 cut(s) | 329 |
| BssECI | CCNNGG | 1 cut(s) | 189 |
| BssMI | GATC | 1 cut(s) | 519 |
| BssNI | GRCGYC | 1 cut(s) | 594 |
| BssSI | CACGAG | 1 cut(s) | 112 |
| BssT1I | CCWWGG | 1 cut(s) | 189 |
| Bst2BI | CACGAG | 1 cut(s) | 112 |
| Bst6I | CTCTTC | 2 cut(s) | 363, 420 |
| BstACI | GRCGYC | 1 cut(s) | 594 |
| BstC8I | GCNNGC | 1 cut(s) | 441 |
| BstDEI | CTNAG | 2 cut(s) | 218, 374 |
| BstF5I | GGATG | 1 cut(s) | 370 |
| BstKTI | GATC | 1 cut(s) | 522 |
| BstMBI | GATC | 1 cut(s) | 519 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 445 |
| BstSCI | CCNGG | 1 cut(s) | 128 |
| BstV1I | GCAGC | 1 cut(s) | 616 |
| BstV2I | GAAGAC | 4 cut(s) | 240, 314, 390, 498 |
| BstX2I | RGATCY | 1 cut(s) | 519 |
| BstYI | RGATCY | 1 cut(s) | 519 |
| BtgZI | GCGATG | 1 cut(s) | 51 |
| BtsCI | GGATG | 1 cut(s) | 370 |
| Cac8I | GCNNGC | 1 cut(s) | 441 |
| CciI | TCATGA | 1 cut(s) | 78 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 42, 77 |
| CviAII | CATG | 4 cut(s) | 79, 180, 274, 328 |
| CviJI | RGCY | 4 cut(s) | 373, 439, 482, 661 |
| CviKI_1 | RGCY | 4 cut(s) | 373, 439, 482, 661 |
| DdeI | CTNAG | 2 cut(s) | 218, 374 |
| DpnI | GATC | 1 cut(s) | 521 |
| DpnII | GATC | 1 cut(s) | 519 |
| DraIII | CACNNNGTG | 1 cut(s) | 114 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 242 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 242 |
| Eam1104I | CTCTTC | 2 cut(s) | 363, 420 |
| EarI | CTCTTC | 2 cut(s) | 363, 420 |
| Eco130I | CCWWGG | 1 cut(s) | 189 |
| EcoRI | GAATTC | 1 cut(s) | 160 |
| EcoT14I | CCWWGG | 1 cut(s) | 189 |
| EcoT22I | ATGCAT | 1 cut(s) | 329 |
| ErhI | CCWWGG | 1 cut(s) | 189 |
| FaeI | CATG | 4 cut(s) | 82, 183, 277, 331 |
| FaiI | YATR | 6 cut(s) | 80, 181, 275, 329, 500, 677 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 569, 601 |
| FaqI | GGGAC | 2 cut(s) | 35, 112 |
| FatI | CATG | 4 cut(s) | 78, 179, 273, 327 |
| FblI | GTMKAC | 1 cut(s) | 298 |
| Fnu4HI | GCNGC | 2 cut(s) | 266, 605 |
| FokI | GGATG | 1 cut(s) | 377 |
| Fsp4HI | GCNGC | 2 cut(s) | 266, 605 |
| FspBI | CTAG | 1 cut(s) | 440 |
| GluI | GCNGC | 2 cut(s) | 266, 605 |
| HapII | CCGG | 1 cut(s) | 130 |
| Hin1I | GRCGYC | 1 cut(s) | 594 |
| Hin1II | CATG | 4 cut(s) | 82, 183, 277, 331 |
| HincII | GTYRAC | 2 cut(s) | 299, 420 |
| HindII | GTYRAC | 2 cut(s) | 299, 420 |
| HinfI | GANTC | 4 cut(s) | 23, 43, 82, 683 |
| HpaII | CCGG | 1 cut(s) | 130 |
| Hpy166II | GTNNAC | 2 cut(s) | 299, 420 |
| Hpy188I | TCNGA | 1 cut(s) | 364 |
| Hpy188III | TCNNGA | 3 cut(s) | 79, 336, 629 |
| Hpy8I | GTNNAC | 2 cut(s) | 299, 420 |
| Hpy99I | CGWCG | 1 cut(s) | 174 |
| HpyAV | CCTTC | 2 cut(s) | 565, 664 |
| HpyCH4IV | ACGT | 1 cut(s) | 594 |
| HpyCH4V | TGCA | 4 cut(s) | 108, 208, 327, 526 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 445 |
| HpyF3I | CTNAG | 2 cut(s) | 218, 374 |
| HpySE526I | ACGT | 1 cut(s) | 594 |
| Hsp92I | GRCGYC | 1 cut(s) | 594 |
| Hsp92II | CATG | 4 cut(s) | 82, 183, 277, 331 |
| Kzo9I | GATC | 1 cut(s) | 519 |
| LguI | GCTCTTC | 1 cut(s) | 363 |
| LpnPI | CCDG | 4 cut(s) | 143, 215, 614, 629 |
| Lsp1109I | GCAGC | 1 cut(s) | 616 |
| LweI | GCATC | 2 cut(s) | 74, 368 |
| MaeI | CTAG | 1 cut(s) | 440 |
| MaeII | ACGT | 1 cut(s) | 594 |
| MaeIII | GTNAC | 2 cut(s) | 281, 391 |
| MalI | GATC | 1 cut(s) | 521 |
| MboI | GATC | 1 cut(s) | 519 |
| MflI | RGATCY | 1 cut(s) | 519 |
| MluCI | AATT | 5 cut(s) | 144, 160, 247, 533, 638 |
| MlyI | GAGTC | 1 cut(s) | 91 |
| MmeI | TCCRAC | 3 cut(s) | 422, 453, 660 |
| MnlI | CCTC | 8 cut(s) | 52, 121, 297, 332, 344, 373, 481, 583 |
| Mph1103I | ATGCAT | 1 cut(s) | 329 |
| MspI | CCGG | 1 cut(s) | 130 |
| MspR9I | CCNGG | 1 cut(s) | 130 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 445 |
| NciI | CCSGG | 1 cut(s) | 130 |
| NdeII | GATC | 1 cut(s) | 519 |
| NheI | GCTAGC | 1 cut(s) | 439 |
| NlaIII | CATG | 4 cut(s) | 82, 183, 277, 331 |
| NlaIV | GGNNCC | 1 cut(s) | 151 |
| NsiI | ATGCAT | 1 cut(s) | 329 |
| PagI | TCATGA | 1 cut(s) | 78 |
| PciSI | GCTCTTC | 1 cut(s) | 363 |
| PfeI | GAWTC | 3 cut(s) | 23, 43, 683 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 404 |
| PfoI | TCCNGGA | 1 cut(s) | 128 |
| PkrI | GCNGC | 2 cut(s) | 267, 606 |
| PleI | GAGTC | 1 cut(s) | 90 |
| PpsI | GAGTC | 1 cut(s) | 90 |
| PspN4I | GGNNCC | 1 cut(s) | 151 |
| PsuI | RGATCY | 1 cut(s) | 519 |
| SalI | GTCGAC | 1 cut(s) | 297 |
| SapI | GCTCTTC | 1 cut(s) | 363 |
| SatI | GCNGC | 2 cut(s) | 266, 605 |
| Sau3AI | GATC | 1 cut(s) | 519 |
| SchI | GAGTC | 1 cut(s) | 91 |
| ScrFI | CCNGG | 1 cut(s) | 130 |
| SetI | ASST | 7 cut(s) | 63, 113, 191, 375, 441, 597, 663 |
| SfaNI | GCATC | 2 cut(s) | 74, 368 |
| Sse9I | AATT | 5 cut(s) | 144, 160, 247, 533, 638 |
| SsiI | CCGC | 1 cut(s) | 266 |
| SspMI | CTAG | 1 cut(s) | 440 |
| StyD4I | CCNGG | 1 cut(s) | 128 |
| StyI | CCWWGG | 1 cut(s) | 189 |
| TaiI | ACGT | 1 cut(s) | 597 |
| TaqI | TCGA | 3 cut(s) | 6, 298, 335 |
| TaqII | GACCGA | 1 cut(s) | 437 |
| TasI | AATT | 5 cut(s) | 144, 160, 247, 533, 638 |
| TauI | GCSGC | 1 cut(s) | 268 |
| TfiI | GAWTC | 3 cut(s) | 23, 43, 683 |
| TseI | GCWGC | 1 cut(s) | 604 |
| TspDTI | ATGAA | 4 cut(s) | 168, 381, 447, 651 |
| TspGWI | ACGGA | 1 cut(s) | 75 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 404 |
| XapI | RAATTY | 1 cut(s) | 160 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 209 |
| XmiI | GTMKAC | 1 cut(s) | 298 |
| XspI | CTAG | 1 cut(s) | 440 |
| ZraI | GACGTC | 1 cut(s) | 595 |
| Zsp2I | ATGCAT | 1 cut(s) | 329 |