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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 755 |
| AccBSI | CCGCTC | 1 cut(s) | 94 |
| AccI | GTMKAC | 2 cut(s) | 27, 675 |
| AccII | CGCG | 1 cut(s) | 669 |
| AciI | CCGC | 2 cut(s) | 94, 509 |
| AclI | AACGTT | 1 cut(s) | 584 |
| AfaI | GTAC | 2 cut(s) | 215, 782 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 149, 755 |
| AgsI | TTSAA | 3 cut(s) | 662, 698, 743 |
| AjiI | CACGTC | 1 cut(s) | 390 |
| AluBI | AGCT | 4 cut(s) | 631, 646, 773, 795 |
| AluI | AGCT | 4 cut(s) | 631, 646, 773, 795 |
| Alw21I | GWGCWC | 1 cut(s) | 395 |
| Alw26I | GTCTC | 1 cut(s) | 380 |
| Alw44I | GTGCAC | 1 cut(s) | 391 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 709 |
| Ama87I | CYCGRG | 1 cut(s) | 355 |
| AoxI | GGCC | 1 cut(s) | 457 |
| ApaLI | GTGCAC | 1 cut(s) | 391 |
| ApeKI | GCWGC | 3 cut(s) | 167, 170, 286 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 77, 569 |
| AspLEI | GCGC | 1 cut(s) | 430 |
| AsuHPI | GGTGA | 3 cut(s) | 166, 253, 542 |
| AvaI | CYCGRG | 1 cut(s) | 355 |
| AxyI | CCTNAGG | 1 cut(s) | 189 |
| BaeGI | GKGCMC | 1 cut(s) | 395 |
| Bbv12I | GWGCWC | 1 cut(s) | 395 |
| BbvI | GCAGC | 3 cut(s) | 154, 157, 298 |
| BccI | CCATC | 2 cut(s) | 459, 757 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 7, 41 |
| BciVI | GTATCC | 1 cut(s) | 133 |
| BclI | TGATCA | 1 cut(s) | 640 |
| BcoDI | GTCTC | 1 cut(s) | 380 |
| BfmI | CTRYAG | 1 cut(s) | 701 |
| BfuI | GTATCC | 1 cut(s) | 133 |
| BisI | GCNGC | 4 cut(s) | 95, 168, 171, 287 |
| BlsI | GCNGC | 4 cut(s) | 96, 169, 172, 288 |
| BmeT110I | CYCGRG | 1 cut(s) | 355 |
| BmgBI | CACGTC | 1 cut(s) | 390 |
| BmsI | GCATC | 3 cut(s) | 244, 336, 706 |
| BpmI | CTGGAG | 1 cut(s) | 668 |
| Bpu10I | CCTNAGC | 1 cut(s) | 461 |
| BsaAI | YACGTR | 1 cut(s) | 213 |
| BsaJI | CCNNGG | 1 cut(s) | 296 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 216, 246 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 149, 755 |
| Bse21I | CCTNAGG | 1 cut(s) | 189 |
| BseDI | CCNNGG | 1 cut(s) | 296 |
| BseGI | GGATG | 2 cut(s) | 51, 307 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 149, 755 |
| BseMII | CTCAG | 1 cut(s) | 180 |
| BseSI | GKGCMC | 1 cut(s) | 395 |
| BseXI | GCAGC | 3 cut(s) | 154, 157, 298 |
| Bsh1236I | CGCG | 1 cut(s) | 669 |
| BshFI | GGCC | 1 cut(s) | 459 |
| BsiHKAI | GWGCWC | 1 cut(s) | 395 |
| BsiHKCI | CYCGRG | 1 cut(s) | 355 |
| BsiSI | CCGG | 1 cut(s) | 605 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 149, 755 |
| BsmAI | GTCTC | 1 cut(s) | 380 |
| BsmBI | CGTCTC | 1 cut(s) | 380 |
| BsnI | GGCC | 1 cut(s) | 459 |
| BsoBI | CYCGRG | 1 cut(s) | 355 |
| Bsp1286I | GDGCHC | 1 cut(s) | 395 |
| Bsp143I | GATC | 1 cut(s) | 640 |
| BspACI | CCGC | 2 cut(s) | 94, 509 |
| BspANI | GGCC | 1 cut(s) | 459 |
| BspCNI | CTCAG | 1 cut(s) | 181 |
| BspFNI | CGCG | 1 cut(s) | 669 |
| BspHI | TCATGA | 1 cut(s) | 274 |
| BspMAI | CTGCAG | 1 cut(s) | 705 |
| BsrBI | CCGCTC | 1 cut(s) | 94 |
| BssECI | CCNNGG | 1 cut(s) | 296 |
| BssMI | GATC | 1 cut(s) | 640 |
| BssT1I | CCWWGG | 1 cut(s) | 296 |
| Bst4CI | ACNGT | 2 cut(s) | 594, 785 |
| BstBAI | YACGTR | 1 cut(s) | 213 |
| BstC8I | GCNNGC | 2 cut(s) | 140, 667 |
| BstDEI | CTNAG | 3 cut(s) | 183, 189, 461 |
| BstF5I | GGATG | 2 cut(s) | 51, 307 |
| BstFNI | CGCG | 1 cut(s) | 669 |
| BstHHI | GCGC | 1 cut(s) | 430 |
| BstKTI | GATC | 1 cut(s) | 643 |
| BstMAI | GTCTC | 1 cut(s) | 380 |
| BstMBI | GATC | 1 cut(s) | 640 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 360, 610 |
| BstSFI | CTRYAG | 1 cut(s) | 701 |
| BstSLI | GKGCMC | 1 cut(s) | 395 |
| BstSNI | TACGTA | 1 cut(s) | 213 |
| BstUI | CGCG | 1 cut(s) | 669 |
| BstV1I | GCAGC | 3 cut(s) | 154, 157, 298 |
| Bsu36I | CCTNAGG | 1 cut(s) | 189 |
| BsuI | GTATCC | 1 cut(s) | 133 |
| BsuRI | GGCC | 1 cut(s) | 459 |
| BtrI | CACGTC | 1 cut(s) | 390 |
| BtsCI | GGATG | 2 cut(s) | 51, 307 |
| BtsI | GCAGTG | 1 cut(s) | 599 |
| BtsIMutI | CAGTG | 2 cut(s) | 599, 707 |
| Cac8I | GCNNGC | 2 cut(s) | 140, 667 |
| CaiI | CAGNNNCTG | 1 cut(s) | 709 |
| CciI | TCATGA | 1 cut(s) | 274 |
| CfoI | GCGC | 1 cut(s) | 430 |
| Csp6I | GTAC | 2 cut(s) | 214, 781 |
| CviAII | CATG | 6 cut(s) | 82, 275, 372, 403, 562, 730 |
| CviQI | GTAC | 2 cut(s) | 214, 781 |
| DdeI | CTNAG | 3 cut(s) | 183, 189, 461 |
| DpnI | GATC | 1 cut(s) | 642 |
| DpnII | GATC | 1 cut(s) | 640 |
| DraI | TTTAAA | 1 cut(s) | 220 |
| Eco105I | TACGTA | 1 cut(s) | 213 |
| Eco130I | CCWWGG | 1 cut(s) | 296 |
| Eco147I | AGGCCT | 1 cut(s) | 459 |
| Eco81I | CCTNAGG | 1 cut(s) | 189 |
| Eco88I | CYCGRG | 1 cut(s) | 355 |
| EcoT14I | CCWWGG | 1 cut(s) | 296 |
| EcoT22I | ATGCAT | 1 cut(s) | 259 |
| ErhI | CCWWGG | 1 cut(s) | 296 |
| Esp3I | CGTCTC | 1 cut(s) | 380 |
| FaeI | CATG | 6 cut(s) | 85, 278, 375, 406, 565, 733 |
| FatI | CATG | 6 cut(s) | 81, 274, 371, 402, 561, 729 |
| FauNDI | CATATG | 1 cut(s) | 541 |
| FbaI | TGATCA | 1 cut(s) | 640 |
| FblI | GTMKAC | 2 cut(s) | 27, 675 |
| Fnu4HI | GCNGC | 4 cut(s) | 95, 168, 171, 287 |
| FokI | GGATG | 2 cut(s) | 58, 314 |
| Fsp4HI | GCNGC | 4 cut(s) | 95, 168, 171, 287 |
| GlaI | GCGC | 1 cut(s) | 429 |
| GluI | GCNGC | 4 cut(s) | 95, 168, 171, 287 |
| GsuI | CTGGAG | 1 cut(s) | 668 |
| HaeIII | GGCC | 1 cut(s) | 459 |
| HapII | CCGG | 1 cut(s) | 605 |
| HhaI | GCGC | 1 cut(s) | 430 |
| Hin1II | CATG | 6 cut(s) | 85, 278, 375, 406, 565, 733 |
| Hin6I | GCGC | 1 cut(s) | 428 |
| HinP1I | GCGC | 1 cut(s) | 428 |
| HincII | GTYRAC | 1 cut(s) | 28 |
| HindII | GTYRAC | 1 cut(s) | 28 |
| HinfI | GANTC | 2 cut(s) | 406, 565 |
| HpaII | CCGG | 1 cut(s) | 605 |
| HphI | GGTGA | 3 cut(s) | 166, 253, 542 |
| Hpy166II | GTNNAC | 5 cut(s) | 28, 393, 506, 676, 781 |
| Hpy188I | TCNGA | 1 cut(s) | 411 |
| Hpy188III | TCNNGA | 1 cut(s) | 275 |
| Hpy8I | GTNNAC | 5 cut(s) | 28, 393, 506, 676, 781 |
| Hpy99I | CGWCG | 1 cut(s) | 32 |
| HpyAV | CCTTC | 4 cut(s) | 16, 36, 143, 349 |
| HpyCH4III | ACNGT | 2 cut(s) | 594, 785 |
| HpyCH4IV | ACGT | 3 cut(s) | 212, 389, 584 |
| HpyCH4V | TGCA | 7 cut(s) | 18, 257, 393, 590, 613, 703, 719 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 360, 610 |
| HpyF3I | CTNAG | 3 cut(s) | 183, 189, 461 |
| HpySE526I | ACGT | 3 cut(s) | 212, 389, 584 |
| Hsp92II | CATG | 6 cut(s) | 85, 278, 375, 406, 565, 733 |
| HspAI | GCGC | 1 cut(s) | 428 |
| Ksp22I | TGATCA | 1 cut(s) | 640 |
| Kzo9I | GATC | 1 cut(s) | 640 |
| LmnI | GCTCC | 1 cut(s) | 91 |
| LpnPI | CCDG | 4 cut(s) | 201, 483, 618, 632 |
| Lsp1109I | GCAGC | 3 cut(s) | 154, 157, 298 |
| LweI | GCATC | 3 cut(s) | 244, 336, 706 |
| MaeII | ACGT | 3 cut(s) | 212, 389, 584 |
| MaeIII | GTNAC | 4 cut(s) | 194, 232, 597, 705 |
| MalI | GATC | 1 cut(s) | 642 |
| MbiI | CCGCTC | 1 cut(s) | 94 |
| MboI | GATC | 1 cut(s) | 640 |
| MboII | GAAGA | 5 cut(s) | 16, 19, 44, 481, 746 |
| MfeI | CAATTG | 1 cut(s) | 421 |
| MhlI | GDGCHC | 1 cut(s) | 395 |
| MluCI | AATT | 3 cut(s) | 415, 421, 435 |
| MlyI | GAGTC | 1 cut(s) | 400 |
| MmeI | TCCRAC | 1 cut(s) | 150 |
| MnlI | CCTC | 3 cut(s) | 184, 469, 643 |
| Mph1103I | ATGCAT | 1 cut(s) | 259 |
| MroXI | GAANNNNTTC | 2 cut(s) | 77, 569 |
| MseI | TTAA | 3 cut(s) | 161, 219, 554 |
| MslI | CAYNNNNRTG | 1 cut(s) | 370 |
| MspA1I | CMGCKG | 1 cut(s) | 646 |
| MspI | CCGG | 1 cut(s) | 605 |
| MunI | CAATTG | 1 cut(s) | 421 |
| MvnI | CGCG | 1 cut(s) | 669 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 360, 610 |
| NdeI | CATATG | 1 cut(s) | 541 |
| NdeII | GATC | 1 cut(s) | 640 |
| NlaIII | CATG | 6 cut(s) | 85, 278, 375, 406, 565, 733 |
| NmuCI | GTSAC | 2 cut(s) | 597, 705 |
| NsiI | ATGCAT | 1 cut(s) | 259 |
| PagI | TCATGA | 1 cut(s) | 274 |
| PceI | AGGCCT | 1 cut(s) | 459 |
| PdmI | GAANNNNTTC | 2 cut(s) | 77, 569 |
| PfeI | GAWTC | 1 cut(s) | 565 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 755 |
| PkrI | GCNGC | 4 cut(s) | 96, 169, 172, 288 |
| PleI | GAGTC | 1 cut(s) | 400 |
| PpsI | GAGTC | 1 cut(s) | 400 |
| Ppu21I | YACGTR | 1 cut(s) | 213 |
| Psp1406I | AACGTT | 1 cut(s) | 584 |
| PstI | CTGCAG | 1 cut(s) | 705 |
| PstNI | CAGNNNCTG | 1 cut(s) | 709 |
| PvuII | CAGCTG | 1 cut(s) | 646 |
| RsaI | GTAC | 2 cut(s) | 215, 782 |
| RsaNI | GTAC | 2 cut(s) | 214, 781 |
| RseI | CAYNNNNRTG | 1 cut(s) | 370 |
| SalI | GTCGAC | 1 cut(s) | 26 |
| SaqAI | TTAA | 3 cut(s) | 161, 219, 554 |
| SatI | GCNGC | 4 cut(s) | 95, 168, 171, 287 |
| Sau3AI | GATC | 1 cut(s) | 640 |
| SchI | GAGTC | 1 cut(s) | 400 |
| SduI | GDGCHC | 1 cut(s) | 395 |
| SfaNI | GCATC | 3 cut(s) | 244, 336, 706 |
| SfcI | CTRYAG | 1 cut(s) | 701 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 370 |
| SnaBI | TACGTA | 1 cut(s) | 213 |
| Sse9I | AATT | 3 cut(s) | 415, 421, 435 |
| SseBI | AGGCCT | 1 cut(s) | 459 |
| SsiI | CCGC | 2 cut(s) | 94, 509 |
| StuI | AGGCCT | 1 cut(s) | 459 |
| StyI | CCWWGG | 1 cut(s) | 296 |
| TaaI | ACNGT | 2 cut(s) | 594, 785 |
| TaiI | ACGT | 3 cut(s) | 215, 392, 587 |
| TaqI | TCGA | 2 cut(s) | 27, 114 |
| TasI | AATT | 3 cut(s) | 415, 421, 435 |
| TatI | WGTACW | 1 cut(s) | 780 |
| TauI | GCSGC | 1 cut(s) | 97 |
| TfiI | GAWTC | 1 cut(s) | 565 |
| Tru1I | TTAA | 3 cut(s) | 161, 219, 554 |
| Tru9I | TTAA | 3 cut(s) | 161, 219, 554 |
| TscAI | CASTG | 2 cut(s) | 606, 714 |
| TseFI | GTSAC | 2 cut(s) | 597, 705 |
| TseI | GCWGC | 3 cut(s) | 167, 170, 286 |
| Tsp45I | GTSAC | 2 cut(s) | 597, 705 |
| TspDTI | ATGAA | 5 cut(s) | 17, 70, 190, 263, 578 |
| TspGWI | ACGGA | 1 cut(s) | 115 |
| TspRI | CASTG | 2 cut(s) | 606, 714 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 755 |
| VneI | GTGCAC | 1 cut(s) | 391 |
| XmiI | GTMKAC | 2 cut(s) | 27, 675 |
| XmnI | GAANNNNTTC | 2 cut(s) | 77, 569 |
| Zsp2I | ATGCAT | 1 cut(s) | 259 |