Protein DCL, chloroplastic-like
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 230 |
| AciI | CCGC | 1 cut(s) | 95 |
| AcuI | CTGAAG | 2 cut(s) | 284, 612 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 101, 595 |
| AflII | CTTAAG | 1 cut(s) | 452 |
| AgsI | TTSAA | 3 cut(s) | 318, 380, 563 |
| AjiI | CACGTC | 1 cut(s) | 8 |
| AjnI | CCWGG | 2 cut(s) | 306, 490 |
| AluBI | AGCT | 3 cut(s) | 212, 357, 488 |
| AluI | AGCT | 3 cut(s) | 212, 357, 488 |
| Alw21I | GWGCWC | 1 cut(s) | 349 |
| Alw26I | GTCTC | 1 cut(s) | 616 |
| Alw44I | GTGCAC | 1 cut(s) | 345 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 619 |
| Ama87I | CYCGRG | 2 cut(s) | 161, 327 |
| Aor13HI | TCCGGA | 1 cut(s) | 230 |
| ApaLI | GTGCAC | 1 cut(s) | 345 |
| ApeKI | GCWGC | 2 cut(s) | 190, 212 |
| AspS9I | GGNCC | 1 cut(s) | 464 |
| AsuC2I | CCSGG | 1 cut(s) | 545 |
| AsuHPI | GGTGA | 2 cut(s) | 53, 282 |
| AsuNHI | GCTAGC | 1 cut(s) | 584 |
| AvaI | CYCGRG | 2 cut(s) | 161, 327 |
| AvaII | GGWCC | 1 cut(s) | 464 |
| BaeGI | GKGCMC | 1 cut(s) | 349 |
| BbsI | GAAGAC | 2 cut(s) | 90, 179 |
| Bbv12I | GWGCWC | 1 cut(s) | 349 |
| BbvI | GCAGC | 2 cut(s) | 177, 199 |
| BciT130I | CCWGG | 2 cut(s) | 308, 492 |
| BcnI | CCSGG | 1 cut(s) | 545 |
| BcoDI | GTCTC | 1 cut(s) | 616 |
| BfaI | CTAG | 2 cut(s) | 339, 585 |
| BfrI | CTTAAG | 1 cut(s) | 452 |
| BisI | GCNGC | 2 cut(s) | 191, 213 |
| BlsI | GCNGC | 2 cut(s) | 192, 214 |
| Bme1390I | CCNGG | 3 cut(s) | 308, 492, 545 |
| Bme18I | GGWCC | 1 cut(s) | 464 |
| BmeT110I | CYCGRG | 2 cut(s) | 161, 327 |
| BmgBI | CACGTC | 1 cut(s) | 8 |
| BmgT120I | GGNCC | 1 cut(s) | 464 |
| BmiI | GGNNCC | 4 cut(s) | 93, 229, 435, 465 |
| BmrFI | CCNGG | 3 cut(s) | 308, 492, 545 |
| BmsI | GCATC | 2 cut(s) | 301, 538 |
| BmtI | GCTAGC | 1 cut(s) | 588 |
| BpiI | GAAGAC | 2 cut(s) | 90, 179 |
| BpmI | CTGGAG | 1 cut(s) | 474 |
| BpuEI | CTTGAG | 1 cut(s) | 203 |
| BpuMI | CCSGG | 1 cut(s) | 545 |
| BsaBI | GATNNNNATC | 2 cut(s) | 609, 636 |
| BsaI | GGTCTC | 1 cut(s) | 616 |
| BsaJI | CCNNGG | 1 cut(s) | 326 |
| BsaWI | WCCGGW | 1 cut(s) | 230 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 101, 595 |
| Bse8I | GATNNNNATC | 2 cut(s) | 609, 636 |
| BseAI | TCCGGA | 1 cut(s) | 230 |
| BseBI | CCWGG | 2 cut(s) | 308, 492 |
| BseDI | CCNNGG | 1 cut(s) | 326 |
| BseGI | GGATG | 6 cut(s) | 120, 202, 307, 316, 553, 610 |
| BseJI | GATNNNNATC | 2 cut(s) | 609, 636 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 101, 595 |
| BseMII | CTCAG | 2 cut(s) | 453, 611 |
| BseSI | GKGCMC | 1 cut(s) | 349 |
| BseXI | GCAGC | 2 cut(s) | 177, 199 |
| BseYI | CCCAGC | 1 cut(s) | 383 |
| BsgI | GTGCAG | 2 cut(s) | 408, 556 |
| Bsh1285I | CGRYCG | 1 cut(s) | 252 |
| BsiEI | CGRYCG | 1 cut(s) | 252 |
| BsiHKAI | GWGCWC | 1 cut(s) | 349 |
| BsiHKCI | CYCGRG | 2 cut(s) | 161, 327 |
| BsiSI | CCGG | 2 cut(s) | 231, 544 |
| BslFI | GGGAC | 4 cut(s) | 18, 29, 144, 477 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 101, 595 |
| BsmAI | GTCTC | 1 cut(s) | 616 |
| BsmFI | GGGAC | 4 cut(s) | 18, 29, 144, 477 |
| Bso31I | GGTCTC | 1 cut(s) | 616 |
| BsoBI | CYCGRG | 2 cut(s) | 161, 327 |
| Bsp1286I | GDGCHC | 1 cut(s) | 349 |
| Bsp13I | TCCGGA | 1 cut(s) | 230 |
| Bsp143I | GATC | 3 cut(s) | 222, 249, 637 |
| BspACI | CCGC | 1 cut(s) | 95 |
| BspCNI | CTCAG | 2 cut(s) | 452, 612 |
| BspEI | TCCGGA | 1 cut(s) | 230 |
| BspLI | GGNNCC | 4 cut(s) | 93, 229, 435, 465 |
| BspOI | GCTAGC | 1 cut(s) | 588 |
| BspTI | CTTAAG | 1 cut(s) | 452 |
| BspTNI | GGTCTC | 1 cut(s) | 616 |
| BssECI | CCNNGG | 1 cut(s) | 326 |
| BssMI | GATC | 3 cut(s) | 222, 249, 637 |
| Bst2UI | CCWGG | 2 cut(s) | 308, 492 |
| Bst4CI | ACNGT | 4 cut(s) | 91, 178, 364, 415 |
| Bst6I | CTCTTC | 1 cut(s) | 438 |
| BstAFI | CTTAAG | 1 cut(s) | 452 |
| BstC8I | GCNNGC | 3 cut(s) | 541, 582, 586 |
| BstDEI | CTNAG | 2 cut(s) | 439, 620 |
| BstF5I | GGATG | 6 cut(s) | 120, 202, 307, 316, 553, 610 |
| BstKTI | GATC | 3 cut(s) | 225, 252, 640 |
| BstMAI | GTCTC | 1 cut(s) | 616 |
| BstMBI | GATC | 3 cut(s) | 222, 249, 637 |
| BstMCI | CGRYCG | 1 cut(s) | 252 |
| BstNI | CCWGG | 2 cut(s) | 308, 492 |
| BstNSI | RCATGY | 1 cut(s) | 510 |
| BstSCI | CCNGG | 3 cut(s) | 306, 490, 543 |
| BstSLI | GKGCMC | 1 cut(s) | 349 |
| BstV1I | GCAGC | 2 cut(s) | 177, 199 |
| BstV2I | GAAGAC | 2 cut(s) | 90, 179 |
| BstX2I | RGATCY | 1 cut(s) | 637 |
| BstYI | RGATCY | 1 cut(s) | 637 |
| BtrI | CACGTC | 1 cut(s) | 8 |
| BtsCI | GGATG | 6 cut(s) | 120, 202, 307, 316, 553, 610 |
| BtsIMutI | CAGTG | 1 cut(s) | 369 |
| Cac8I | GCNNGC | 3 cut(s) | 541, 582, 586 |
| CaiI | CAGNNNCTG | 1 cut(s) | 619 |
| Cfr13I | GGNCC | 1 cut(s) | 464 |
| CviAII | CATG | 2 cut(s) | 167, 507 |
| CviJI | RGCY | 7 cut(s) | 190, 212, 357, 488, 495, 580, 588 |
| CviKI_1 | RGCY | 7 cut(s) | 190, 212, 357, 488, 495, 580, 588 |
| DdeI | CTNAG | 2 cut(s) | 439, 620 |
| DpnI | GATC | 3 cut(s) | 224, 251, 639 |
| DpnII | GATC | 3 cut(s) | 222, 249, 637 |
| Eam1104I | CTCTTC | 1 cut(s) | 438 |
| EarI | CTCTTC | 1 cut(s) | 438 |
| Eco31I | GGTCTC | 1 cut(s) | 616 |
| Eco47I | GGWCC | 1 cut(s) | 464 |
| Eco57I | CTGAAG | 2 cut(s) | 284, 612 |
| Eco88I | CYCGRG | 2 cut(s) | 161, 327 |
| EcoO109I | RGGNCCY | 1 cut(s) | 464 |
| EcoRII | CCWGG | 2 cut(s) | 306, 490 |
| FaeI | CATG | 2 cut(s) | 170, 510 |
| FaiI | YATR | 4 cut(s) | 138, 168, 295, 508 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 435, 467 |
| FaqI | GGGAC | 4 cut(s) | 18, 29, 144, 477 |
| FatI | CATG | 2 cut(s) | 166, 506 |
| Fnu4HI | GCNGC | 2 cut(s) | 191, 213 |
| FokI | GGATG | 6 cut(s) | 127, 189, 314, 323, 560, 617 |
| Fsp4HI | GCNGC | 2 cut(s) | 191, 213 |
| FspBI | CTAG | 2 cut(s) | 339, 585 |
| GluI | GCNGC | 2 cut(s) | 191, 213 |
| GsaI | CCCAGC | 1 cut(s) | 387 |
| GsuI | CTGGAG | 1 cut(s) | 474 |
| HapII | CCGG | 2 cut(s) | 231, 544 |
| Hin1II | CATG | 2 cut(s) | 170, 510 |
| HinfI | GANTC | 5 cut(s) | 76, 118, 157, 389, 476 |
| HpaII | CCGG | 2 cut(s) | 231, 544 |
| HphI | GGTGA | 2 cut(s) | 53, 282 |
| Hpy166II | GTNNAC | 3 cut(s) | 11, 347, 527 |
| Hpy188I | TCNGA | 4 cut(s) | 28, 264, 442, 631 |
| Hpy188III | TCNNGA | 9 cut(s) | 80, 161, 182, 206, 231, 247, 339, 431, 614 |
| Hpy8I | GTNNAC | 3 cut(s) | 11, 347, 527 |
| HpyAV | CCTTC | 5 cut(s) | 32, 41, 259, 600, 636 |
| HpyCH4III | ACNGT | 4 cut(s) | 91, 178, 364, 415 |
| HpyCH4IV | ACGT | 2 cut(s) | 7, 243 |
| HpyCH4V | TGCA | 6 cut(s) | 215, 347, 425, 510, 551, 573 |
| HpyF3I | CTNAG | 2 cut(s) | 439, 620 |
| HpySE526I | ACGT | 2 cut(s) | 7, 243 |
| Hsp92II | CATG | 2 cut(s) | 170, 510 |
| Kpn2I | TCCGGA | 1 cut(s) | 230 |
| Kzo9I | GATC | 3 cut(s) | 222, 249, 637 |
| LmnI | GCTCC | 2 cut(s) | 457, 493 |
| Lsp1109I | GCAGC | 2 cut(s) | 177, 199 |
| LweI | GCATC | 2 cut(s) | 301, 538 |
| MaeI | CTAG | 2 cut(s) | 339, 585 |
| MaeII | ACGT | 2 cut(s) | 7, 243 |
| MaeIII | GTNAC | 2 cut(s) | 244, 288 |
| MalI | GATC | 3 cut(s) | 224, 251, 639 |
| MboI | GATC | 3 cut(s) | 222, 249, 637 |
| MboII | GAAGA | 7 cut(s) | 44, 80, 95, 113, 184, 232, 455 |
| MflI | RGATCY | 1 cut(s) | 637 |
| MhlI | GDGCHC | 1 cut(s) | 349 |
| MluCI | AATT | 4 cut(s) | 234, 320, 350, 520 |
| MlyI | GAGTC | 1 cut(s) | 166 |
| MnlI | CCTC | 9 cut(s) | 22, 37, 105, 180, 336, 438, 439, 448, 595 |
| MroI | TCCGGA | 1 cut(s) | 230 |
| MseI | TTAA | 2 cut(s) | 369, 453 |
| MspA1I | CMGCKG | 1 cut(s) | 97 |
| MspCI | CTTAAG | 1 cut(s) | 452 |
| MspI | CCGG | 2 cut(s) | 231, 544 |
| MspR9I | CCNGG | 3 cut(s) | 308, 492, 545 |
| MvaI | CCWGG | 2 cut(s) | 308, 492 |
| NciI | CCSGG | 1 cut(s) | 545 |
| NdeII | GATC | 3 cut(s) | 222, 249, 637 |
| NheI | GCTAGC | 1 cut(s) | 584 |
| NlaIII | CATG | 2 cut(s) | 170, 510 |
| NlaIV | GGNNCC | 4 cut(s) | 93, 229, 435, 465 |
| NmuCI | GTSAC | 2 cut(s) | 244, 288 |
| NspI | RCATGY | 1 cut(s) | 510 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 249 |
| PfeI | GAWTC | 4 cut(s) | 76, 118, 389, 476 |
| PfoI | TCCNGGA | 1 cut(s) | 306 |
| PkrI | GCNGC | 2 cut(s) | 192, 214 |
| Ple19I | CGATCG | 1 cut(s) | 252 |
| PleI | GAGTC | 1 cut(s) | 165 |
| PpsI | GAGTC | 1 cut(s) | 165 |
| PpuMI | RGGWCCY | 1 cut(s) | 464 |
| Psp5II | RGGWCCY | 1 cut(s) | 464 |
| Psp6I | CCWGG | 2 cut(s) | 306, 490 |
| PspFI | CCCAGC | 1 cut(s) | 383 |
| PspGI | CCWGG | 2 cut(s) | 306, 490 |
| PspN4I | GGNNCC | 4 cut(s) | 93, 229, 435, 465 |
| PspPI | GGNCC | 1 cut(s) | 464 |
| PspPPI | RGGWCCY | 1 cut(s) | 464 |
| PstNI | CAGNNNCTG | 1 cut(s) | 619 |
| PsuI | RGATCY | 1 cut(s) | 637 |
| PvuI | CGATCG | 1 cut(s) | 252 |
| SaqAI | TTAA | 2 cut(s) | 369, 453 |
| SatI | GCNGC | 2 cut(s) | 191, 213 |
| Sau3AI | GATC | 3 cut(s) | 222, 249, 637 |
| Sau96I | GGNCC | 1 cut(s) | 464 |
| SchI | GAGTC | 1 cut(s) | 166 |
| ScrFI | CCNGG | 3 cut(s) | 308, 492, 545 |
| SduI | GDGCHC | 1 cut(s) | 349 |
| SfaNI | GCATC | 2 cut(s) | 301, 538 |
| SinI | GGWCC | 1 cut(s) | 464 |
| SmlI | CTYRAG | 2 cut(s) | 182, 452 |
| SmoI | CTYRAG | 2 cut(s) | 182, 452 |
| Sse9I | AATT | 4 cut(s) | 234, 320, 350, 520 |
| SsiI | CCGC | 1 cut(s) | 95 |
| SspMI | CTAG | 2 cut(s) | 339, 585 |
| StyD4I | CCNGG | 3 cut(s) | 306, 490, 543 |
| TaaI | ACNGT | 4 cut(s) | 91, 178, 364, 415 |
| TaiI | ACGT | 2 cut(s) | 10, 246 |
| TasI | AATT | 4 cut(s) | 234, 320, 350, 520 |
| TfiI | GAWTC | 4 cut(s) | 76, 118, 389, 476 |
| Tru1I | TTAA | 2 cut(s) | 369, 453 |
| Tru9I | TTAA | 2 cut(s) | 369, 453 |
| TscAI | CASTG | 1 cut(s) | 369 |
| TseFI | GTSAC | 2 cut(s) | 244, 288 |
| TseI | GCWGC | 2 cut(s) | 190, 212 |
| Tsp45I | GTSAC | 2 cut(s) | 244, 288 |
| TspDTI | ATGAA | 6 cut(s) | 51, 113, 153, 191, 582, 599 |
| TspGWI | ACGGA | 1 cut(s) | 488 |
| TspRI | CASTG | 1 cut(s) | 369 |
| Vha464I | CTTAAG | 1 cut(s) | 452 |
| VneI | GTGCAC | 1 cut(s) | 345 |
| VpaK11BI | GGWCC | 1 cut(s) | 464 |
| XbaI | TCTAGA | 1 cut(s) | 338 |
| XceI | RCATGY | 1 cut(s) | 510 |
| XspI | CTAG | 2 cut(s) | 339, 585 |