Rroxscaffold_1G00016860

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000025
Physical Location & Seq
Forward (+)
20967368 .. 20971997
4630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00016860.1

Sequence Viewer

Length: 2064 bp
ATGAAGGATGCCACCGAGACTCACCTAAGCTATTTCTCCCAAAATCAAAGCGGTTTCAAAATCGAAACCGTCCTAAATCCAAAAATCCTCACTAAATCGATCGGACTCCGCGAAGCTAGGGAGCGAAGCGGCGGCGAATTCGGGCGGCGAAGTCGGGCGGCGAAGCGGGCGGTGACTCCGGCGACGAAGAGGAAGCCGCCGAGCACTACCGACCCCCAAAACGAAGCCCGGGTCTCTTCCGACGAAGCCCTATCCAATTCCGAGGAGGAGGAGCCGATCAACGATGAAGACAACTCCCGCGGCTCCGATGACGAGGCCGCGCCGCCGAGAACGACGATGACTTTGAAGAAGAGTATTGCATTTTTGGGCACACTTTGTCATCCCTTCTTCTCTGTGTTGCCGATTGACTTGCAGGATGGAGATAATGAAGTGAGCAAACGTGAGAAGGCCAGGCTAGTATACTACGGGAGTCGGTATACTGCGGGGGTCGGTTCGCTGCCGAGGGTCGGTACACGAGATATGGCAAAGAGGAAGGCTGCTGCAATAGACAAAGACGATGTACCGGTTGGAACAAAGAAGATGAGAGCACGAGAGACCGGATTACATACGTTTTTTGATTCGAAAAATATGGTTTTCCGGTTTGGAGATAGTGAGTTCAAAATCACAGTGCGCGATGTAGAGGTTATATTTGGGATTCCAAACAAAGGAGAAGAGATAGATATGGCAGCGAGACAGTCAAAGGGTGACATAGAAATGATCAAAAAGCACTTCAACAAATGCGATCGTTGTGTAAGAAAAAGCGACATAGATGTTGCATTAGAAAAAGCTCTTCTTAAACGATCCAAACATAATGCGGATGATGTGGCAAGGTTGCTGATCTTGAGCCTTTTGGCTTCGTTCTTAGTATGCGCATCGGGACACACACTTGCATGGAACCTTGTGAATGTTGTTTGTTCAGATTTGAAAGAGTTGAAGAAGTACAATTGGGCAAAAGCGATTGCCGATGCCTTTGGAAAGAGGGCTAGCAAAGGTGGAGAAAGACAAAACATGTGCATTATCGAGATGCCTACTATTGATAATGAAGAGTACATGCCAACATTTGCAAAGTGGGGGCTTCCGAAGCTACATGCTTCAATGTTGGAAATCACCGACGAGTATTTTGAGAGCTTGTTTGACAAGAGCAAAAACAGTGAAGAAGAGAATGAAATGGAAGTGGGCGATGAAGAAGTGAGGGAGGAGACGGATGAAGAAGAGGATGACATAGTAATGGAGGAGATAGCTAAAGAAGAAGGAGAGGATGAAATAGCAAGCACACCAACATTTGGTGAATGGCCGGAGATGAAAGATAAAGCGGAGAAAAGCAATGAAAACATGAAGGAAGTGTTGGACAGCCTTGACAAAGCTTTAAAATCAAAAATGAATGAGGAGAATTGGGAAAGTGCTCAAAAAATGGTAAAAAGGCTGAGGAGGATTCAAAAGAGATTGAAGAAGAGGATCAGCACGCTTCGAAAAAAGATAAAGGCATTGGAGGATGAGAAATTTGAAGAATATGAGGATGAAAGTGATAATCCTGCGAGGGTGCAGCAGCATGCAAAAGAATTAGATGACCAAGAGCAACTACGGTGGAGCACGTGGAAAACGAGAAGGATGATAATCCTGCCGAGGGCAAGCAACTACAAATGTTTTGGGATGGAGGACAGTTTGGGAGTGTCTCAAAGCTTTGATGTGAAAGCTCGCGAAGGATCGTCAATAAATTCCAATGTGGTCAATGCTTACATAGACATAATCAAAGGCGATTTAGAGAAATCGAGCATTACAAACCAAGGAATCATGACGACATATGTGTTGGTTGGACTGCGGACCTTATATCCTACACTATATAGAGAATATAGCAAAGAACGAAAGGCTGAGATAAGCAAAGCGGATAGAGGCGTTTTGGTTGACAAGGTTTTGGGATTAGAAAGAGAAATCAAAGAAAGCTTGAAGAACATGAGAAGAACCATGGTGGAGAGGTTTCTTAAACATGATGAGGGCTGGTATTCGAAAGTAGGTTACACTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

687

Amino Acids

78.5

Weight (kDa)

6.08

Isoelectric Point (pI)

45.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000025)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31370 AT1G31380 AT1G31390 AT1G31400 AT2G01790 AT2G05400 AT2G05400 AT2G05400 AT2G05410 AT2G05410 AT2G05420 AT2G05430 AT2G42455 AT2G42460 AT2G42465 AT2G42470 AT2G42475 AT2G42480 AT3G27040 AT3G29580 AT3G44790 AT3G44800 AT3G44805 AT3G58200 AT3G58210 AT3G58220 AT3G58220 AT3G58220 AT3G58220 AT3G58220 AT3G58230 AT3G58240 AT3G58250 AT3G58260 AT3G58270 AT3G58270 AT3G58270 AT3G58280 AT3G58290 AT3G58290 AT3G58290 AT3G58300 AT3G58320 AT3G58330 AT3G58340 AT3G58340 AT3G58350 AT3G58350 AT3G58360 AT3G58370 AT3G58380 AT3G58400 AT3G58410 AT3G58410 AT3G58430 AT3G58430 AT3G58440 AT5G03550
fragaria_vesca FvH4_2g00084 FvH4_2g15701 FvH4_2g24334 FvH4_3g23322 FvH4_3g23322 FvH4_3g23322 FvH4_3g23482 FvH4_3g23482 FvH4_3g23482 FvH4_3g23491 FvH4_3g23492 FvH4_3g23510 FvH4_3g23520 FvH4_3g23520 FvH4_3g23520 FvH4_3g23580 FvH4_3g38842 FvH4_4g10396 FvH4_5g29370 FvH4_5g32130 FvH4_7g04570 FvH4_7g04571 FvH4_7g04741 FvH4_7g04741 FvH4_7g04750 FvH4_7g04750 FvH4_7g04760 FvH4_7g04760 FvH4_7g04760 FvH4_7g04760 FvH4_7g04760 FvH4_7g04770 FvH4_7g04770 FvH4_7g04770
malus_domestica MD00G1065000.v1.1 MD00G1065300.v1.1 MD02G1267400.v1.1 MD02G1267600.v1.1 MD02G1267700.v1.1 MD02G1267800.v1.1 MD02G1268100.v1.1 MD02G1268300.v1.1 MD02G1268400.v1.1 MD02G1268500.v1.1 MD03G1193600.v1.1 MD05G1071400.v1.1 MD07G1051000.v1.1 MD07G1051100.v1.1 MD07G1051200.v1.1 MD07G1051300.v1.1 MD07G1051500.v1.1 MD07G1051700.v1.1 MD07G1051800.v1.1 MD07G1085400.v1.1 MD07G1085500.v1.1 MD11G1177200.v1.1 MD11G1209800.v1.1 MD11G1209900.v1.1 MD11G1210000.v1.1 MD12G1048100.v1.1 MD12G1048600.v1.1 MD14G1046700.v1.1 MD14G1047400.v1.1
prunus_persica Prupe.2G051200_v2.0.a1 Prupe.2G052500_v2.0.a1 Prupe.2G052500_v2.0.a1 Prupe.2G052600_v2.0.a1 Prupe.2G052600_v2.0.a1 Prupe.2G052700_v2.0.a1 Prupe.2G052800_v2.0.a1 Prupe.2G052900_v2.0.a1 Prupe.2G052900_v2.0.a1 Prupe.2G053100_v2.0.a1 Prupe.2G053300_v2.0.a1 Prupe.2G054800_v2.0.a1 Prupe.2G054900_v2.0.a1 Prupe.2G054900_v2.0.a1 Prupe.2G054900_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.4G223300_v2.0.a1 Prupe.4G223300_v2.0.a1
pyrus_communis pycom01g04720 pycom02g22950 pycom02g22960 pycom02g22970 pycom02g22990 pycom02g23000 pycom02g23010 pycom03g14600 pycom03g14610 pycom05g06150 pycom07g03820 pycom07g03830 pycom07g03850 pycom07g03860 pycom07g03880 pycom07g03890 pycom07g03900 pycom07g04000 pycom07g04010 pycom11g18540 pycom11g18560 pycom12g04190 pycom17g19100
rosa_chinensis RchiOBHm_Chr0c19g0500051 RchiOBHm_Chr1g0330011 RchiOBHm_Chr1g0330031 RchiOBHm_Chr1g0330041 RchiOBHm_Chr1g0330121 RchiOBHm_Chr1g0330141 RchiOBHm_Chr1g0330151 RchiOBHm_Chr1g0330181 RchiOBHm_Chr1g0330191 RchiOBHm_Chr1g0330201 RchiOBHm_Chr1g0330211 RchiOBHm_Chr1g0330221 RchiOBHm_Chr1g0367471 RchiOBHm_Chr2g0113311 RchiOBHm_Chr2g0148281 RchiOBHm_Chr4g0400061 RchiOBHm_Chr4g0437571 RchiOBHm_Chr5g0041361 RchiOBHm_Chr5g0041421 RchiOBHm_Chr5g0041481 RchiOBHm_Chr5g0041491 RchiOBHm_Chr5g0041501 RchiOBHm_Chr5g0041511 RchiOBHm_Chr5g0042491 RchiOBHm_Chr5g0042501 RchiOBHm_Chr6g0263551 RchiOBHm_Chr6g0286221 RchiOBHm_Chr7g0228171 RchiOBHm_Chr7g0231391 RchiOBHm_Chr7g0231401
rosa_laevigata RLG00000000870 RLG00000001420 RLG00000001582 RLG00000001602 RLG00000001700 RLG00000002476 RLG00000005787 RLG00000007689 RLG00000008446 RLG00000008811 RLG00000008812 RLG00000009013 RLG00000009942 RLG00000012752 RLG00000013511 RLG00000014053 RLG00000015257 RLG00000015258 RLG00000016149 RLG00000016691 RLG00000018661 RLG00000018662 RLG00000020991 RLG00000020992 RLG00000020993 RLG00000027309 RLG00000028568 RLG00000029119 RLG00000029371 RLG00000029563 RLG00000029818 RLG00000029819 RLG00000029821 RLG00000029822 RLG00000029824 RLG00000029827 RLG00000029828 RLG00000029829 RLG00000029841 RLG00000029843 RLG00000032676 RLG00000033366 RLG00000033367 RLG00000034023 RLG00000034066 RLG00000034072 RLG00000034073 RLG00000034074 RLG00000034130 RLG00000034133 RLG00000035487 RLG00000035488 RLG00000035793
rosa_multiflora Rmu_co8241405.1_g000001 Rmu_co8251033.1_g000001 Rmu_co8297611.1_g000001 Rmu_co8346639.1_g000001 Rmu_co8405917.1_g000001 Rmu_sc0000045.1_g000044 Rmu_sc0000061.1_g000032 Rmu_sc0000068.1_g000021 Rmu_sc0000068.1_g000022 Rmu_sc0000415.1_g000001 Rmu_sc0000499.1_g000003 Rmu_sc0000594.1_g000020 Rmu_sc0000673.1_g000007 Rmu_sc0000908.1_g000004 Rmu_sc0001123.1_g000013 Rmu_sc0001123.1_g000014 Rmu_sc0001167.1_g000026 Rmu_sc0001598.1_g000011 Rmu_sc0001696.1_g000003 Rmu_sc0001696.1_g000011 Rmu_sc0001696.1_g000019 Rmu_sc0001696.1_g000020 Rmu_sc0003007.1_g000016 Rmu_sc0003007.1_g000029 Rmu_sc0003051.1_g000010 Rmu_sc0003396.1_g000029 Rmu_sc0004798.1_g000020 Rmu_sc0005375.1_g000016 Rmu_sc0005375.1_g000017 Rmu_sc0005659.1_g000033 Rmu_sc0005659.1_g000034 Rmu_sc0006311.1_g000011 Rmu_sc0008249.1_g000002 Rmu_sc0008249.1_g000018 Rmu_sc0008600.1_g000014 Rmu_sc0009365.1_g000010 Rmu_sc0009365.1_g000022 Rmu_sc0009365.1_g000025 Rmu_sc0011112.1_g000008 Rmu_sc0011112.1_g000009 Rmu_sc0012031.1_g000020 Rmu_sc0013350.1_g000014 Rmu_sc0020359.1_g000004 Rmu_sc0021997.1_g000003 Rmu_sc0021997.1_g000004 Rmu_sc0023610.1_g000002 Rmu_sc0023611.1_g000001 Rmu_sc0028894.1_g000001 Rmu_sc0031050.1_g000001 Rmu_sc0041109.1_g000001 Rmu_ssc0000087.1_g000050 Rmu_ssc0000087.1_g000051 Rmu_ssc0000087.1_g000052 Rmu_ssc0000295.1_g000058 Rmu_ssc0000343.1_g000031 Rmu_ssc0000423.1_g000015 Rmu_ssc0000470.1_g000005 Rmu_ssc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00005900 Rroxscaffold_1G00005910 Rroxscaffold_1G00012600 Rroxscaffold_1G00016860 Rroxscaffold_1G00032110 Rroxscaffold_1G00038140 Rroxscaffold_1G00038200 Rroxscaffold_1G00039020 Rroxscaffold_1G00039030 Rroxscaffold_1G00039080 Rroxscaffold_1G00039090 Rroxscaffold_1G00039270 Rroxscaffold_2G00097120 Rroxscaffold_2G00097130 Rroxscaffold_2G00137700 Rroxscaffold_2G00151740 Rroxscaffold_2G00151750 Rroxscaffold_3G00224160 Rroxscaffold_3G00224170 Rroxscaffold_3G00226080 Rroxscaffold_3G00226090 Rroxscaffold_3G00229350 Rroxscaffold_3G00231340 Rroxscaffold_4G00291390 Rroxscaffold_4G00316220 Rroxscaffold_4G00316230 Rroxscaffold_4G00320040 Rroxscaffold_4G00320050 Rroxscaffold_4G00320120 Rroxscaffold_4G00320140 Rroxscaffold_4G00320180 Rroxscaffold_4G00320270 Rroxscaffold_4G00320280 Rroxscaffold_4G00320290 Rroxscaffold_4G00320430 Rroxscaffold_4G00321910 Rroxscaffold_5G00348730 Rroxscaffold_5G00355020 Rroxscaffold_5G00355080 Rroxscaffold_5G00357490 Rroxscaffold_5G00376500 Rroxscaffold_5G00376510 Rroxscaffold_7G00179590 Rroxscaffold_7G00179600 Rroxscaffold_7G00198610
rosa_rugosa Rorug01G0085400 Rorug01G0085400 Rorug01G0085400 Rorug01G0085400 Rorug01G0085400 Rorug01G0085400 Rorug01G0086300 Rorug01G0086500 Rorug01G0087000 Rorug01G0087100 Rorug01G0087600 Rorug01G0087700 Rorug01G0087800 Rorug01G0087800 Rorug01G0302500 Rorug02G0249300 Rorug02G0249300 Rorug02G0249400 Rorug03G0189000 Rorug04G0181800 Rorug04G0283800.1 Rorug04G0283900.1 Rorug05G0043500 Rorug05G0191800 Rorug05G0191900 Rorug05G0192800 Rorug05G0192900 Rorug05G0193000 Rorug05G0201000 Rorug05G0201100 Rorug06G0173900 Rorug06G0173900 Rorug07G0009800 Rorug07G0246300.1 Rorug07G0246400
rosa_samantha Rh1AG103600 Rh1AG104800 Rh1AG105200 Rh1AG105300 Rh1AG105500 Rh1BG082000 Rh1BG082200 Rh1BG082300 Rh1BG082900 Rh1BG083000 Rh1BG083300 Rh1BG083500 Rh1BG083600 Rh1BG083800 Rh1BG083900 Rh1BG084000 Rh1BG084100 Rh1BG084200 Rh1BG092200 Rh1BG275300 Rh1CG098700 Rh1CG098800 Rh1CG100300 Rh1CG100400 Rh1CG100600 Rh1CG100900 Rh1CG101000 Rh1CG101700 Rh1DG066900 Rh1DG067000 Rh1DG106000 Rh1DG107600 Rh1DG107800 Rh1DG108100 Rh1DG108200 Rh1DG108600 Rh1DG108700 Rh1DG108900 Rh1DG109000 Rh1DG109100 Rh1DG109300 Rh1DG109400 Rh1DG109500 Rh1DG109700 Rh1DG109800 Rh1DG173900 Rh2AG270300 Rh2AG398900 Rh2CG245000 Rh2CG260700 Rh2CG278600 Rh2CG342400 Rh2CG385700 Rh3DG197200 Rh3DG197300 Rh4AG015100 Rh4BG347400 Rh4DG360400 Rh5AG278600 Rh5AG278700 Rh5AG286900 Rh5AG287000 Rh5BG282900 Rh5BG283000 Rh5BG283100 Rh5BG291400 Rh5CG314900 Rh5CG315100 Rh5CG315400 Rh5CG315700 Rh5CG315900 Rh5CG316000 Rh5CG323600 Rh5CG323700 Rh5DG291400 Rh5DG292300 Rh5DG292500 Rh5DG292700 Rh5DG292800 Rh5DG292900 Rh5DG301100 Rh5DG301200 Rh5DG301400 Rh5DG350900 Rh6BG407700 Rh6CG294900 Rh6DG286900 Rh7AG400400 Rh7AG420600 Rh7BG381700 Rh7BG395000 Rh7CG418600 Rh7CG440700 Rh7DG396500 Rh7DG413200
rosa_wichuraiana Rw1G003300 Rw1G008240 Rw1G008250 Rw1G008270 Rw1G008330 Rw1G008340 Rw1G008350 Rw1G008360 Rw1G008370 Rw1G008810 Rw1G021140 Rw3G020650 Rw5G026150 Rw5G026200 Rw5G026240 Rw5G026250 Rw5G026650 Rw5G030820 Rw7G006630 Rw7G030060 Rw7G034700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 910
AccB7I CCANNNNNTGG 1 cut(s) 1322
AccI GTMKAC 2 cut(s) 459, 476
AccII CGCG 5 cut(s) 111, 300, 320, 672, 1737
AclWI GGATC 3 cut(s) 834, 1502, 1750
AcoI YGGCCR 1 cut(s) 1331
AcsI RAATTY 3 cut(s) 137, 1538, 1753
AcvI CACGTG 1 cut(s) 1632
AfaI GTAC 4 cut(s) 511, 561, 980, 1088
AfiI CCNNNNNNNGG 4 cut(s) 506, 704, 1322, 1663
AflIII ACRYGT 1 cut(s) 1047
AgeI ACCGGT 1 cut(s) 562
AjnI CCWGG 1 cut(s) 449
AjuI GAANNNNNNNTTGG 2 cut(s) 1367, 1399
Alw21I GWGCWC 4 cut(s) 206, 589, 1444, 1631
Alw26I GTCTC 6 cut(s) 11, 238, 587, 724, 1232, 1716
AlwI GGATC 3 cut(s) 834, 1502, 1750
Ama87I CYCGRG 1 cut(s) 228
AoxI GGCC 3 cut(s) 315, 447, 1331
ApeKI GCWGC 6 cut(s) 496, 536, 539, 725, 1582, 1585
ApoI RAATTY 3 cut(s) 137, 1538, 1753
ArsI GACNNNNNNTTYG 6 cut(s) 216, 248, 325, 357, 1142, 1174
AsiGI ACCGGT 1 cut(s) 562
AspLEI GCGC 3 cut(s) 322, 672, 911
AspS9I GGNCC 1 cut(s) 1860
AsuC2I CCSGG 2 cut(s) 229, 230
AsuHPI GGTGA 5 cut(s) 14, 184, 755, 1138, 1337
AsuII TTCGAA 3 cut(s) 620, 1507, 2042
AsuNHI GCTAGC 1 cut(s) 1022
AvaI CYCGRG 1 cut(s) 228
AvaII GGWCC 1 cut(s) 1860
BaeGI GKGCMC 1 cut(s) 371
BauI CACGAG 2 cut(s) 513, 588
BbrPI CACGTG 1 cut(s) 1632
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 4 cut(s) 206, 589, 1444, 1631
BbvCI CCTCAGC 1 cut(s) 1463
BbvI GCAGC 6 cut(s) 483, 523, 526, 737, 1594, 1597
BccI CCATC 2 cut(s) 410, 1684
BcgI CGANNNNNNTGC 2 cut(s) 391, 425
BciT130I CCWGG 1 cut(s) 451
BclI TGATCA 1 cut(s) 756
BcnI CCSGG 2 cut(s) 229, 230
BcoDI GTCTC 6 cut(s) 11, 238, 587, 724, 1232, 1716
BfaI CTAG 3 cut(s) 117, 455, 1023
Bme1390I CCNGG 3 cut(s) 229, 230, 451
Bme18I GGWCC 1 cut(s) 1860
BmeT110I CYCGRG 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 1860
BmiI GGNNCC 3 cut(s) 273, 304, 935
BmrFI CCNGG 3 cut(s) 229, 230, 451
BmsI GCATC 3 cut(s) 920, 994, 1053
BmtI GCTAGC 1 cut(s) 1026
BpiI GAAGAC 1 cut(s) 294
Bpu10I CCTNAGC 2 cut(s) 26, 1463
Bpu14I TTCGAA 3 cut(s) 620, 1507, 2042
BpuEI CTTGAG 1 cut(s) 901
BpuMI CCSGG 2 cut(s) 229, 230
Bsa29I ATCGAT 1 cut(s) 98
BsaAI YACGTR 1 cut(s) 1632
BsaBI GATNNNNATC 1 cut(s) 1652
BsaI GGTCTC 2 cut(s) 238, 587
BsaJI CCNNGG 7 cut(s) 228, 261, 298, 500, 1661, 1822, 2001
BsaWI WCCGGW 3 cut(s) 562, 596, 636
Bsc4I CCNNNNNNNGG 4 cut(s) 506, 704, 1322, 1663
Bse118I RCCGGY 1 cut(s) 562
Bse3DI GCAATG 1 cut(s) 1369
Bse8I GATNNNNATC 1 cut(s) 1652
BseBI CCWGG 1 cut(s) 451
BseCI ATCGAT 1 cut(s) 98
BseDI CCNNGG 7 cut(s) 228, 261, 298, 500, 1661, 1822, 2001
BseJI GATNNNNATC 1 cut(s) 1652
BseLI CCNNNNNNNGG 4 cut(s) 506, 704, 1322, 1663
BseMI GCAATG 1 cut(s) 1369
BseMII CTCAG 2 cut(s) 1454, 1899
BseRI GAGGAG 7 cut(s) 278, 281, 284, 1250, 1286, 1439, 1480
BseSI GKGCMC 1 cut(s) 371
BseXI GCAGC 6 cut(s) 483, 523, 526, 737, 1594, 1597
BsgI GTGCAG 1 cut(s) 1601
Bsh1236I CGCG 5 cut(s) 111, 300, 320, 672, 1737
Bsh1285I CGRYCG 2 cut(s) 102, 784
BshFI GGCC 3 cut(s) 317, 449, 1333
BshTI ACCGGT 1 cut(s) 562
BshVI ATCGAT 1 cut(s) 98
BsiEI CGRYCG 2 cut(s) 102, 784
BsiHKAI GWGCWC 4 cut(s) 206, 589, 1444, 1631
BsiHKCI CYCGRG 1 cut(s) 228
BsiSI CCGG 6 cut(s) 179, 229, 563, 597, 637, 1334
BslFI GGGAC 1 cut(s) 930
BslI CCNNNNNNNGG 4 cut(s) 506, 704, 1322, 1663
BsmAI GTCTC 6 cut(s) 11, 238, 587, 724, 1232, 1716
BsmBI CGTCTC 1 cut(s) 1232
BsmFI GGGAC 1 cut(s) 930
BsnI GGCC 3 cut(s) 317, 449, 1333
Bso31I GGTCTC 2 cut(s) 238, 587
BsoBI CYCGRG 1 cut(s) 228
Bsp119I TTCGAA 3 cut(s) 620, 1507, 2042
Bsp1286I GDGCHC 5 cut(s) 206, 371, 589, 1444, 1631
Bsp143I GATC 8 cut(s) 99, 276, 756, 781, 839, 876, 1494, 1742
Bsp19I CCATGG 1 cut(s) 2001
Bsp68I TCGCGA 1 cut(s) 1737
BspANI GGCC 3 cut(s) 317, 449, 1333
BspCNI CTCAG 2 cut(s) 1455, 1900
BspDI ATCGAT 1 cut(s) 98
BspFNI CGCG 5 cut(s) 111, 300, 320, 672, 1737
BspHI TCATGA 1 cut(s) 1830
BspLI GGNNCC 3 cut(s) 273, 304, 935
BspOI GCTAGC 1 cut(s) 1026
BspPI GGATC 3 cut(s) 834, 1502, 1750
BspQI GCTCTTC 1 cut(s) 834
BspT104I TTCGAA 3 cut(s) 620, 1507, 2042
BspTNI GGTCTC 2 cut(s) 238, 587
BsrDI GCAATG 1 cut(s) 1369
BsrFI RCCGGY 1 cut(s) 562
BssAI RCCGGY 1 cut(s) 562
BssECI CCNNGG 7 cut(s) 228, 261, 298, 500, 1661, 1822, 2001
BssMI GATC 8 cut(s) 99, 276, 756, 781, 839, 876, 1494, 1742
BssNAI GTATAC 2 cut(s) 460, 477
BssSI CACGAG 2 cut(s) 513, 588
BssT1I CCWWGG 2 cut(s) 1822, 2001
Bst1107I GTATAC 2 cut(s) 460, 477
Bst2BI CACGAG 2 cut(s) 513, 588
Bst2UI CCWGG 1 cut(s) 451
Bst4CI ACNGT 6 cut(s) 70, 667, 735, 1190, 1623, 1700
Bst6I CTCTTC 9 cut(s) 182, 241, 344, 705, 834, 1077, 1191, 1245, 1484
BstBAI YACGTR 1 cut(s) 1632
BstBI TTCGAA 3 cut(s) 620, 1507, 2042
BstC8I GCNNGC 7 cut(s) 168, 1024, 1309, 1502, 1590, 1669, 1735
BstDEI CTNAG 4 cut(s) 26, 901, 1463, 1908
BstDSI CCRYGG 2 cut(s) 298, 2001
BstFNI CGCG 5 cut(s) 111, 300, 320, 672, 1737
BstHHI GCGC 3 cut(s) 322, 672, 911
BstKTI GATC 8 cut(s) 102, 279, 759, 784, 842, 879, 1497, 1745
BstMAI GTCTC 6 cut(s) 11, 238, 587, 724, 1232, 1716
BstMBI GATC 8 cut(s) 99, 276, 756, 781, 839, 876, 1494, 1742
BstMCI CGRYCG 2 cut(s) 102, 784
BstMWI GCNNNNNNNGC 2 cut(s) 167, 1120
BstNI CCWGG 1 cut(s) 451
BstNSI RCATGY 4 cut(s) 1051, 1093, 1130, 1592
BstSCI CCNGG 3 cut(s) 227, 228, 449
BstSLI GKGCMC 1 cut(s) 371
BstUI CGCG 5 cut(s) 111, 300, 320, 672, 1737
BstV1I GCAGC 6 cut(s) 483, 523, 526, 737, 1594, 1597
BstV2I GAAGAC 1 cut(s) 294
BstZ17I GTATAC 2 cut(s) 460, 477
Bsu15I ATCGAT 1 cut(s) 98
BsuRI GGCC 3 cut(s) 317, 449, 1333
BsuTUI ATCGAT 1 cut(s) 98
BtgI CCRYGG 2 cut(s) 298, 2001
BtgZI GCGATG 2 cut(s) 687, 1233
BtsIMutI CAGTG 2 cut(s) 672, 1195
BtuMI TCGCGA 1 cut(s) 1737
Cac8I GCNNGC 7 cut(s) 168, 1024, 1309, 1502, 1590, 1669, 1735
CciI TCATGA 1 cut(s) 1830
CfoI GCGC 3 cut(s) 322, 672, 911
Cfr10I RCCGGY 1 cut(s) 562
Cfr13I GGNCC 1 cut(s) 1860
Cfr42I CCGCGG 1 cut(s) 301
Cfr9I CCCGGG 1 cut(s) 228
ClaI ATCGAT 1 cut(s) 98
Csp6I GTAC 4 cut(s) 510, 560, 979, 1087
CspAI ACCGGT 1 cut(s) 562
CspCI CAANNNNNGTGG 2 cut(s) 1604, 1639
CviQI GTAC 4 cut(s) 510, 560, 979, 1087
DdeI CTNAG 4 cut(s) 26, 901, 1463, 1908
DpnI GATC 8 cut(s) 101, 278, 758, 783, 841, 878, 1496, 1744
DpnII GATC 8 cut(s) 99, 276, 756, 781, 839, 876, 1494, 1742
DraI TTTAAA 1 cut(s) 1407
EaeI YGGCCR 1 cut(s) 1331
Eam1104I CTCTTC 9 cut(s) 182, 241, 344, 705, 834, 1077, 1191, 1245, 1484
EarI CTCTTC 9 cut(s) 182, 241, 344, 705, 834, 1077, 1191, 1245, 1484
Eco130I CCWWGG 2 cut(s) 1822, 2001
Eco31I GGTCTC 2 cut(s) 238, 587
Eco47I GGWCC 1 cut(s) 1860
Eco72I CACGTG 1 cut(s) 1632
Eco88I CYCGRG 1 cut(s) 228
EcoRI GAATTC 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 449
EcoT14I CCWWGG 2 cut(s) 1822, 2001
ErhI CCWWGG 2 cut(s) 1822, 2001
Esp3I CGTCTC 1 cut(s) 1232
FalI AAGNNNNNCTT 2 cut(s) 816, 848
FaqI GGGAC 1 cut(s) 930
FauI CCCGC 3 cut(s) 159, 305, 475
FauNDI CATATG 1 cut(s) 1840
FbaI TGATCA 1 cut(s) 756
FblI GTMKAC 2 cut(s) 459, 476
FspAI RTGCGCAY 1 cut(s) 910
FspBI CTAG 3 cut(s) 117, 455, 1023
FspI TGCGCA 1 cut(s) 910
GlaI GCGC 3 cut(s) 321, 671, 910
HaeIII GGCC 3 cut(s) 317, 449, 1333
HapII CCGG 6 cut(s) 179, 229, 563, 597, 637, 1334
HhaI GCGC 3 cut(s) 322, 672, 911
Hin6I GCGC 3 cut(s) 320, 670, 909
HinP1I GCGC 3 cut(s) 320, 670, 909
HincII GTYRAC 1 cut(s) 1942
HindII GTYRAC 1 cut(s) 1942
HindIII AAGCTT 3 cut(s) 1401, 1717, 1978
HinfI GANTC 8 cut(s) 19, 105, 175, 469, 617, 694, 1471, 1827
HpaII CCGG 6 cut(s) 179, 229, 563, 597, 637, 1334
HphI GGTGA 5 cut(s) 14, 184, 755, 1138, 1337
Hpy166II GTNNAC 4 cut(s) 460, 477, 512, 1942
Hpy188I TCNGA 6 cut(s) 104, 241, 262, 307, 958, 1119
Hpy188III TCNNGA 5 cut(s) 880, 915, 1060, 1736, 1831
Hpy8I GTNNAC 4 cut(s) 460, 477, 512, 1942
Hpy99I CGWCG 4 cut(s) 187, 245, 337, 1154
HpyAV CCTTC 7 cut(s) 394, 439, 526, 1283, 1369, 1638, 1733
HpyCH4III ACNGT 6 cut(s) 70, 667, 735, 1190, 1623, 1700
HpyCH4IV ACGT 3 cut(s) 439, 608, 1631
HpyCH4V TGCA 9 cut(s) 359, 412, 542, 815, 929, 1053, 1103, 1582, 1592
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 1120
HpyF3I CTNAG 4 cut(s) 26, 901, 1463, 1908
HpySE526I ACGT 3 cut(s) 439, 608, 1631
HspAI GCGC 3 cut(s) 320, 670, 909
Ksp22I TGATCA 1 cut(s) 756
KspI CCGCGG 1 cut(s) 301
Kzo9I GATC 8 cut(s) 99, 276, 756, 781, 839, 876, 1494, 1742
LguI GCTCTTC 1 cut(s) 834
LmnI GCTCC 4 cut(s) 121, 271, 308, 1626
Lsp1109I GCAGC 6 cut(s) 483, 523, 526, 737, 1594, 1597
LweI GCATC 3 cut(s) 920, 994, 1053
MaeI CTAG 3 cut(s) 117, 455, 1023
MaeII ACGT 3 cut(s) 439, 608, 1631
MaeIII GTNAC 3 cut(s) 172, 743, 2051
MalI GATC 8 cut(s) 101, 278, 758, 783, 841, 878, 1496, 1744
MboI GATC 8 cut(s) 99, 276, 756, 781, 839, 876, 1494, 1742
MfeI CAATTG 1 cut(s) 982
MhlI GDGCHC 5 cut(s) 206, 371, 589, 1444, 1631
MluCI AATT 7 cut(s) 137, 256, 982, 1429, 1538, 1598, 1753
MlyI GAGTC 4 cut(s) 13, 99, 169, 478
MmeI TCCRAC 5 cut(s) 264, 547, 1119, 1365, 1831
MseI TTAA 3 cut(s) 834, 1406, 2019
MslI CAYNNNNRTG 3 cut(s) 752, 928, 1265
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 6 cut(s) 179, 229, 563, 597, 637, 1334
MspR9I CCNGG 3 cut(s) 229, 230, 451
MunI CAATTG 1 cut(s) 982
MvaI CCWGG 1 cut(s) 451
MvnI CGCG 5 cut(s) 111, 300, 320, 672, 1737
MwoI GCNNNNNNNGC 2 cut(s) 167, 1120
NciI CCSGG 2 cut(s) 229, 230
NcoI CCATGG 1 cut(s) 2001
NdeI CATATG 1 cut(s) 1840
NdeII GATC 8 cut(s) 99, 276, 756, 781, 839, 876, 1494, 1742
NheI GCTAGC 1 cut(s) 1022
NlaIV GGNNCC 3 cut(s) 273, 304, 935
NmeAIII GCCGAG 4 cut(s) 225, 351, 525, 1686
NmuCI GTSAC 2 cut(s) 172, 743
NruI TCGCGA 1 cut(s) 1737
NsbI TGCGCA 1 cut(s) 910
NspI RCATGY 4 cut(s) 1051, 1093, 1130, 1592
NspV TTCGAA 3 cut(s) 620, 1507, 2042
PaeI GCATGC 1 cut(s) 1592
PagI TCATGA 1 cut(s) 1830
PciI ACATGT 1 cut(s) 1047
PciSI GCTCTTC 1 cut(s) 834
PcsI WCGNNNNNNNCGW 2 cut(s) 108, 1637
PfeI GAWTC 4 cut(s) 617, 694, 1471, 1827
PflMI CCANNNNNTGG 1 cut(s) 1322
PinAI ACCGGT 1 cut(s) 562
Ple19I CGATCG 2 cut(s) 102, 784
PleI GAGTC 4 cut(s) 13, 99, 169, 477
PmaCI CACGTG 1 cut(s) 1632
PmlI CACGTG 1 cut(s) 1632
PpsI GAGTC 4 cut(s) 13, 99, 169, 477
Ppu21I YACGTR 1 cut(s) 1632
PscI ACATGT 1 cut(s) 1047
Psp6I CCWGG 1 cut(s) 449
PspCI CACGTG 1 cut(s) 1632
PspGI CCWGG 1 cut(s) 449
PspN4I GGNNCC 3 cut(s) 273, 304, 935
PspPI GGNCC 1 cut(s) 1860
PvuI CGATCG 2 cut(s) 102, 784
RruI TCGCGA 1 cut(s) 1737
RsaI GTAC 4 cut(s) 511, 561, 980, 1088
RsaNI GTAC 4 cut(s) 510, 560, 979, 1087
RseI CAYNNNNRTG 3 cut(s) 752, 928, 1265
SacII CCGCGG 1 cut(s) 301
SapI GCTCTTC 1 cut(s) 834
SaqAI TTAA 3 cut(s) 834, 1406, 2019
Sau3AI GATC 8 cut(s) 99, 276, 756, 781, 839, 876, 1494, 1742
Sau96I GGNCC 1 cut(s) 1860
SchI GAGTC 4 cut(s) 13, 99, 169, 478
ScrFI CCNGG 3 cut(s) 229, 230, 451
SduI GDGCHC 5 cut(s) 206, 371, 589, 1444, 1631
SfaNI GCATC 3 cut(s) 920, 994, 1053
Sfr303I CCGCGG 1 cut(s) 301
SfuI TTCGAA 3 cut(s) 620, 1507, 2042
SgrBI CCGCGG 1 cut(s) 301
SinI GGWCC 1 cut(s) 1860
SmaI CCCGGG 1 cut(s) 230
SmiMI CAYNNNNRTG 3 cut(s) 752, 928, 1265
SmlI CTYRAG 1 cut(s) 880
SmoI CTYRAG 1 cut(s) 880
SphI GCATGC 1 cut(s) 1592
Sse9I AATT 7 cut(s) 137, 256, 982, 1429, 1538, 1598, 1753
SspMI CTAG 3 cut(s) 117, 455, 1023
StyD4I CCNGG 3 cut(s) 227, 228, 449
StyI CCWWGG 2 cut(s) 1822, 2001
TaaI ACNGT 6 cut(s) 70, 667, 735, 1190, 1623, 1700
TaiI ACGT 3 cut(s) 442, 611, 1634
TaqI TCGA 7 cut(s) 63, 98, 620, 1059, 1507, 1808, 2042
TasI AATT 7 cut(s) 137, 256, 982, 1429, 1538, 1598, 1753
TatI WGTACW 2 cut(s) 978, 1086
TauI GCSGC 8 cut(s) 132, 135, 148, 161, 199, 303, 320, 325
TfiI GAWTC 4 cut(s) 617, 694, 1471, 1827
Tru1I TTAA 3 cut(s) 834, 1406, 2019
Tru9I TTAA 3 cut(s) 834, 1406, 2019
TscAI CASTG 2 cut(s) 672, 1195
TseFI GTSAC 2 cut(s) 172, 743
TseI GCWGC 6 cut(s) 496, 536, 539, 725, 1582, 1585
Tsp45I GTSAC 2 cut(s) 172, 743
TspGWI ACGGA 1 cut(s) 1256
TspMI CCCGGG 1 cut(s) 228
TspRI CASTG 2 cut(s) 672, 1195
Van91I CCANNNNNTGG 1 cut(s) 1322
VpaK11BI GGWCC 1 cut(s) 1860
XapI RAATTY 3 cut(s) 137, 1538, 1753
XceI RCATGY 4 cut(s) 1051, 1093, 1130, 1592
XmaI CCCGGG 1 cut(s) 228
XmiI GTMKAC 2 cut(s) 459, 476
XspI CTAG 3 cut(s) 117, 455, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.