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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 225 |
| AccI | GTMKAC | 1 cut(s) | 43 |
| AcyI | GRCGYC | 1 cut(s) | 222 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 78, 463 |
| AgsI | TTSAA | 4 cut(s) | 55, 112, 262, 436 |
| AluBI | AGCT | 2 cut(s) | 284, 325 |
| AluI | AGCT | 2 cut(s) | 284, 325 |
| Alw21I | GWGCWC | 1 cut(s) | 421 |
| Alw26I | GTCTC | 1 cut(s) | 9 |
| Alw44I | GTGCAC | 1 cut(s) | 417 |
| ApaLI | GTGCAC | 1 cut(s) | 417 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 359, 391 |
| AxyI | CCTNAGG | 1 cut(s) | 517 |
| BaeGI | GKGCMC | 1 cut(s) | 421 |
| BbsI | GAAGAC | 1 cut(s) | 136 |
| Bbv12I | GWGCWC | 1 cut(s) | 421 |
| BccI | CCATC | 1 cut(s) | 400 |
| BciVI | GTATCC | 1 cut(s) | 508 |
| BclI | TGATCA | 1 cut(s) | 84 |
| BcoDI | GTCTC | 1 cut(s) | 9 |
| BfaI | CTAG | 1 cut(s) | 535 |
| BfmI | CTRYAG | 1 cut(s) | 44 |
| BfuI | GTATCC | 1 cut(s) | 508 |
| BmsI | GCATC | 2 cut(s) | 373, 479 |
| BpiI | GAAGAC | 1 cut(s) | 136 |
| BsaHI | GRCGYC | 1 cut(s) | 222 |
| BsaI | GGTCTC | 1 cut(s) | 9 |
| BsaJI | CCNNGG | 1 cut(s) | 292 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 78, 463 |
| Bse21I | CCTNAGG | 1 cut(s) | 517 |
| BseDI | CCNNGG | 1 cut(s) | 292 |
| BseGI | GGATG | 1 cut(s) | 87 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 78, 463 |
| BseMII | CTCAG | 1 cut(s) | 531 |
| BseSI | GKGCMC | 1 cut(s) | 421 |
| BsgI | GTGCAG | 1 cut(s) | 496 |
| BsiHKAI | GWGCWC | 1 cut(s) | 421 |
| BslFI | GGGAC | 2 cut(s) | 168, 440 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 78, 463 |
| BsmAI | GTCTC | 1 cut(s) | 9 |
| BsmFI | GGGAC | 2 cut(s) | 168, 440 |
| BsmI | GAATGC | 2 cut(s) | 179, 303 |
| Bso31I | GGTCTC | 1 cut(s) | 9 |
| Bsp1286I | GDGCHC | 1 cut(s) | 421 |
| Bsp143I | GATC | 2 cut(s) | 84, 132 |
| BspCNI | CTCAG | 1 cut(s) | 530 |
| BspHI | TCATGA | 1 cut(s) | 483 |
| BspTNI | GGTCTC | 1 cut(s) | 9 |
| BssECI | CCNNGG | 1 cut(s) | 292 |
| BssMI | GATC | 2 cut(s) | 84, 132 |
| BssNI | GRCGYC | 1 cut(s) | 222 |
| BssT1I | CCWWGG | 1 cut(s) | 292 |
| Bst4CI | ACNGT | 2 cut(s) | 30, 48 |
| BstACI | GRCGYC | 1 cut(s) | 222 |
| BstDEI | CTNAG | 1 cut(s) | 517 |
| BstF5I | GGATG | 1 cut(s) | 87 |
| BstKTI | GATC | 2 cut(s) | 87, 135 |
| BstMAI | GTCTC | 1 cut(s) | 9 |
| BstMBI | GATC | 2 cut(s) | 84, 132 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 331 |
| BstSFI | CTRYAG | 1 cut(s) | 44 |
| BstSLI | GKGCMC | 1 cut(s) | 421 |
| BstV2I | GAAGAC | 1 cut(s) | 136 |
| Bsu36I | CCTNAGG | 1 cut(s) | 517 |
| BsuI | GTATCC | 1 cut(s) | 508 |
| BtgZI | GCGATG | 1 cut(s) | 456 |
| BtsCI | GGATG | 1 cut(s) | 87 |
| CciI | TCATGA | 1 cut(s) | 483 |
| CviAII | CATG | 1 cut(s) | 484 |
| CviJI | RGCY | 3 cut(s) | 5, 284, 325 |
| CviKI_1 | RGCY | 3 cut(s) | 5, 284, 325 |
| DdeI | CTNAG | 1 cut(s) | 517 |
| DpnI | GATC | 2 cut(s) | 86, 134 |
| DpnII | GATC | 2 cut(s) | 84, 132 |
| DraI | TTTAAA | 1 cut(s) | 162 |
| Eco130I | CCWWGG | 1 cut(s) | 292 |
| Eco31I | GGTCTC | 1 cut(s) | 9 |
| Eco81I | CCTNAGG | 1 cut(s) | 517 |
| EcoT14I | CCWWGG | 1 cut(s) | 292 |
| ErhI | CCWWGG | 1 cut(s) | 292 |
| FaeI | CATG | 1 cut(s) | 487 |
| FaiI | YATR | 6 cut(s) | 12, 33, 141, 201, 217, 485 |
| FaqI | GGGAC | 2 cut(s) | 168, 440 |
| FatI | CATG | 1 cut(s) | 483 |
| FbaI | TGATCA | 1 cut(s) | 84 |
| FblI | GTMKAC | 1 cut(s) | 43 |
| FokI | GGATG | 1 cut(s) | 94 |
| FspBI | CTAG | 1 cut(s) | 535 |
| Hin1I | GRCGYC | 1 cut(s) | 222 |
| Hin1II | CATG | 1 cut(s) | 487 |
| HinfI | GANTC | 4 cut(s) | 355, 428, 448, 487 |
| Hpy166II | GTNNAC | 2 cut(s) | 44, 419 |
| Hpy188I | TCNGA | 1 cut(s) | 231 |
| Hpy188III | TCNNGA | 3 cut(s) | 92, 211, 484 |
| Hpy8I | GTNNAC | 2 cut(s) | 44, 419 |
| Hpy99I | CGWCG | 1 cut(s) | 224 |
| HpyAV | CCTTC | 2 cut(s) | 302, 511 |
| HpyCH4III | ACNGT | 2 cut(s) | 30, 48 |
| HpyCH4IV | ACGT | 1 cut(s) | 222 |
| HpyCH4V | TGCA | 6 cut(s) | 177, 386, 419, 425, 470, 513 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 331 |
| HpyF3I | CTNAG | 1 cut(s) | 517 |
| HpySE526I | ACGT | 1 cut(s) | 222 |
| Hsp92I | GRCGYC | 1 cut(s) | 222 |
| Hsp92II | CATG | 1 cut(s) | 487 |
| Ksp22I | TGATCA | 1 cut(s) | 84 |
| Kzo9I | GATC | 2 cut(s) | 84, 132 |
| LpnPI | CCDG | 4 cut(s) | 105, 112, 137, 504 |
| LweI | GCATC | 2 cut(s) | 373, 479 |
| MaeI | CTAG | 1 cut(s) | 535 |
| MaeII | ACGT | 1 cut(s) | 222 |
| MaeIII | GTNAC | 1 cut(s) | 394 |
| MalI | GATC | 2 cut(s) | 86, 134 |
| MboI | GATC | 2 cut(s) | 84, 132 |
| MboII | GAAGA | 3 cut(s) | 136, 287, 364 |
| MhlI | GDGCHC | 1 cut(s) | 421 |
| MluCI | AATT | 1 cut(s) | 182 |
| MlyI | GAGTC | 1 cut(s) | 496 |
| MnlI | CCTC | 3 cut(s) | 99, 457, 526 |
| MseI | TTAA | 1 cut(s) | 161 |
| Mva1269I | GAATGC | 2 cut(s) | 179, 303 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 331 |
| NdeII | GATC | 2 cut(s) | 84, 132 |
| NlaIII | CATG | 1 cut(s) | 487 |
| NmuCI | GTSAC | 1 cut(s) | 394 |
| PagI | TCATGA | 1 cut(s) | 483 |
| PctI | GAATGC | 2 cut(s) | 179, 303 |
| PfeI | GAWTC | 3 cut(s) | 355, 428, 448 |
| PleI | GAGTC | 1 cut(s) | 495 |
| PpsI | GAGTC | 1 cut(s) | 495 |
| SaqAI | TTAA | 1 cut(s) | 161 |
| Sau3AI | GATC | 2 cut(s) | 84, 132 |
| SchI | GAGTC | 1 cut(s) | 496 |
| SduI | GDGCHC | 1 cut(s) | 421 |
| SetI | ASST | 8 cut(s) | 74, 110, 225, 286, 327, 468, 518, 523 |
| SfaNI | GCATC | 2 cut(s) | 373, 479 |
| SfcI | CTRYAG | 1 cut(s) | 44 |
| Sse9I | AATT | 1 cut(s) | 182 |
| SspMI | CTAG | 1 cut(s) | 535 |
| StyI | CCWWGG | 1 cut(s) | 292 |
| TaaI | ACNGT | 2 cut(s) | 30, 48 |
| TaiI | ACGT | 1 cut(s) | 225 |
| TaqI | TCGA | 2 cut(s) | 366, 411 |
| TaqII | GACCGA | 1 cut(s) | 33 |
| TasI | AATT | 1 cut(s) | 182 |
| TfiI | GAWTC | 3 cut(s) | 355, 428, 448 |
| Tru1I | TTAA | 1 cut(s) | 161 |
| Tru9I | TTAA | 1 cut(s) | 161 |
| TseFI | GTSAC | 1 cut(s) | 394 |
| Tsp45I | GTSAC | 1 cut(s) | 394 |
| TspDTI | ATGAA | 4 cut(s) | 80, 186, 188, 365 |
| VneI | GTGCAC | 1 cut(s) | 417 |
| XmiI | GTMKAC | 1 cut(s) | 43 |
| XspI | CTAG | 1 cut(s) | 535 |
| ZraI | GACGTC | 1 cut(s) | 223 |