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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 851 |
| AatII | GACGTC | 1 cut(s) | 429 |
| AccB1I | GGYRCC | 1 cut(s) | 1161 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1151 |
| AccI | GTMKAC | 2 cut(s) | 43, 247 |
| AciI | CCGC | 1 cut(s) | 875 |
| AcsI | RAATTY | 2 cut(s) | 769, 949 |
| AcyI | GRCGYC | 1 cut(s) | 426 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 78, 282, 667, 1151 |
| AgsI | TTSAA | 6 cut(s) | 55, 112, 212, 259, 316, 640 |
| AluBI | AGCT | 5 cut(s) | 488, 529, 896, 976, 1120 |
| AluI | AGCT | 5 cut(s) | 488, 529, 896, 976, 1120 |
| Alw21I | GWGCWC | 1 cut(s) | 625 |
| Alw26I | GTCTC | 2 cut(s) | 9, 213 |
| Alw44I | GTGCAC | 1 cut(s) | 621 |
| ApaLI | GTGCAC | 1 cut(s) | 621 |
| ApeKI | GCWGC | 1 cut(s) | 976 |
| ApoI | RAATTY | 2 cut(s) | 769, 949 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 563, 595 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 695 |
| AxyI | CCTNAGG | 1 cut(s) | 721 |
| BaeGI | GKGCMC | 1 cut(s) | 625 |
| BanI | GGYRCC | 1 cut(s) | 1161 |
| BauI | CACGAG | 1 cut(s) | 474 |
| BbsI | GAAGAC | 6 cut(s) | 136, 340, 849, 908, 1053, 1137 |
| Bbv12I | GWGCWC | 1 cut(s) | 625 |
| BbvCI | CCTCAGC | 1 cut(s) | 1121 |
| BbvI | GCAGC | 1 cut(s) | 963 |
| BccI | CCATC | 3 cut(s) | 819, 904, 954 |
| BciVI | GTATCC | 2 cut(s) | 453, 712 |
| BclI | TGATCA | 1 cut(s) | 288 |
| BcoDI | GTCTC | 2 cut(s) | 9, 213 |
| BfaI | CTAG | 1 cut(s) | 92 |
| BfmI | CTRYAG | 2 cut(s) | 44, 248 |
| BfuI | GTATCC | 2 cut(s) | 453, 712 |
| BisI | GCNGC | 2 cut(s) | 875, 977 |
| BlsI | GCNGC | 2 cut(s) | 876, 978 |
| BmiI | GGNNCC | 2 cut(s) | 760, 1163 |
| BmsI | GCATC | 2 cut(s) | 683, 1106 |
| BpiI | GAAGAC | 6 cut(s) | 136, 340, 849, 908, 1053, 1137 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1121 |
| Bsa29I | ATCGAT | 1 cut(s) | 615 |
| BsaHI | GRCGYC | 1 cut(s) | 426 |
| BsaI | GGTCTC | 2 cut(s) | 9, 213 |
| BsaJI | CCNNGG | 2 cut(s) | 496, 798 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 78, 282, 667, 1151 |
| Bse21I | CCTNAGG | 1 cut(s) | 721 |
| Bse3DI | GCAATG | 1 cut(s) | 1068 |
| BseCI | ATCGAT | 1 cut(s) | 615 |
| BseDI | CCNNGG | 2 cut(s) | 496, 798 |
| BseGI | GGATG | 3 cut(s) | 87, 291, 570 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 78, 282, 667, 1151 |
| BseMI | GCAATG | 1 cut(s) | 1068 |
| BseMII | CTCAG | 3 cut(s) | 735, 888, 1112 |
| BseRI | GAGGAG | 2 cut(s) | 930, 1104 |
| BseSI | GKGCMC | 1 cut(s) | 625 |
| BseXI | GCAGC | 1 cut(s) | 963 |
| BsgI | GTGCAG | 3 cut(s) | 700, 800, 962 |
| BshNI | GGYRCC | 1 cut(s) | 1161 |
| BshVI | ATCGAT | 1 cut(s) | 615 |
| BsiHKAI | GWGCWC | 1 cut(s) | 625 |
| BslFI | GGGAC | 1 cut(s) | 644 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 78, 282, 667, 1151 |
| BsmAI | GTCTC | 2 cut(s) | 9, 213 |
| BsmFI | GGGAC | 1 cut(s) | 644 |
| BsmI | GAATGC | 2 cut(s) | 179, 383 |
| Bso31I | GGTCTC | 2 cut(s) | 9, 213 |
| Bsp1286I | GDGCHC | 1 cut(s) | 625 |
| Bsp143I | GATC | 5 cut(s) | 132, 288, 336, 567, 612 |
| BspACI | CCGC | 1 cut(s) | 875 |
| BspCNI | CTCAG | 3 cut(s) | 734, 889, 1113 |
| BspDI | ATCGAT | 1 cut(s) | 615 |
| BspHI | TCATGA | 1 cut(s) | 687 |
| BspLI | GGNNCC | 2 cut(s) | 760, 1163 |
| BspQI | GCTCTTC | 1 cut(s) | 1110 |
| BspT107I | GGYRCC | 1 cut(s) | 1161 |
| BspTNI | GGTCTC | 2 cut(s) | 9, 213 |
| BsrDI | GCAATG | 1 cut(s) | 1068 |
| BssECI | CCNNGG | 2 cut(s) | 496, 798 |
| BssMI | GATC | 5 cut(s) | 132, 288, 336, 567, 612 |
| BssNI | GRCGYC | 1 cut(s) | 426 |
| BssSI | CACGAG | 1 cut(s) | 474 |
| BssT1I | CCWWGG | 2 cut(s) | 496, 798 |
| Bst2BI | CACGAG | 1 cut(s) | 474 |
| Bst4CI | ACNGT | 4 cut(s) | 30, 48, 234, 252 |
| Bst6I | CTCTTC | 1 cut(s) | 1110 |
| BstACI | GRCGYC | 1 cut(s) | 426 |
| BstDEI | CTNAG | 4 cut(s) | 721, 827, 897, 1121 |
| BstF5I | GGATG | 3 cut(s) | 87, 291, 570 |
| BstKTI | GATC | 5 cut(s) | 135, 291, 339, 570, 615 |
| BstMAI | GTCTC | 2 cut(s) | 9, 213 |
| BstMBI | GATC | 5 cut(s) | 132, 288, 336, 567, 612 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 535 |
| BstSFI | CTRYAG | 2 cut(s) | 44, 248 |
| BstSLI | GKGCMC | 1 cut(s) | 625 |
| BstV1I | GCAGC | 1 cut(s) | 963 |
| BstV2I | GAAGAC | 6 cut(s) | 136, 340, 849, 908, 1053, 1137 |
| Bsu15I | ATCGAT | 1 cut(s) | 615 |
| Bsu36I | CCTNAGG | 1 cut(s) | 721 |
| BsuI | GTATCC | 2 cut(s) | 453, 712 |
| BsuTUI | ATCGAT | 1 cut(s) | 615 |
| BtgZI | GCGATG | 2 cut(s) | 623, 660 |
| BtsCI | GGATG | 3 cut(s) | 87, 291, 570 |
| CciI | TCATGA | 1 cut(s) | 687 |
| ClaI | ATCGAT | 1 cut(s) | 615 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 651, 686 |
| CviAII | CATG | 5 cut(s) | 688, 738, 789, 883, 1067 |
| CviJI | RGCY | 7 cut(s) | 5, 488, 529, 550, 896, 976, 1120 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 488, 529, 550, 896, 976, 1120 |
| DdeI | CTNAG | 4 cut(s) | 721, 827, 897, 1121 |
| DpnI | GATC | 5 cut(s) | 134, 290, 338, 569, 614 |
| DpnII | GATC | 5 cut(s) | 132, 288, 336, 567, 612 |
| DraI | TTTAAA | 2 cut(s) | 162, 366 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 851 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 851 |
| Eam1104I | CTCTTC | 1 cut(s) | 1110 |
| EarI | CTCTTC | 1 cut(s) | 1110 |
| Eco130I | CCWWGG | 2 cut(s) | 496, 798 |
| Eco31I | GGTCTC | 2 cut(s) | 9, 213 |
| Eco81I | CCTNAGG | 1 cut(s) | 721 |
| EcoRI | GAATTC | 1 cut(s) | 769 |
| EcoT14I | CCWWGG | 2 cut(s) | 496, 798 |
| EcoT22I | ATGCAT | 1 cut(s) | 1068 |
| ErhI | CCWWGG | 2 cut(s) | 496, 798 |
| FaeI | CATG | 5 cut(s) | 691, 741, 792, 886, 1070 |
| FaqI | GGGAC | 1 cut(s) | 644 |
| FatI | CATG | 5 cut(s) | 687, 737, 788, 882, 1066 |
| FbaI | TGATCA | 1 cut(s) | 288 |
| FblI | GTMKAC | 2 cut(s) | 43, 247 |
| Fnu4HI | GCNGC | 2 cut(s) | 875, 977 |
| FokI | GGATG | 3 cut(s) | 94, 298, 577 |
| Fsp4HI | GCNGC | 2 cut(s) | 875, 977 |
| FspBI | CTAG | 1 cut(s) | 92 |
| GluI | GCNGC | 2 cut(s) | 875, 977 |
| Hin1I | GRCGYC | 1 cut(s) | 426 |
| Hin1II | CATG | 5 cut(s) | 691, 741, 792, 886, 1070 |
| HinfI | GANTC | 6 cut(s) | 516, 559, 632, 652, 691, 1106 |
| Hpy166II | GTNNAC | 3 cut(s) | 44, 248, 623 |
| Hpy188I | TCNGA | 3 cut(s) | 564, 1076, 1102 |
| Hpy188III | TCNNGA | 6 cut(s) | 92, 296, 415, 476, 688, 925 |
| Hpy8I | GTNNAC | 3 cut(s) | 44, 248, 623 |
| Hpy99I | CGWCG | 2 cut(s) | 428, 783 |
| HpyAV | CCTTC | 2 cut(s) | 506, 715 |
| HpyCH4III | ACNGT | 4 cut(s) | 30, 48, 234, 252 |
| HpyCH4IV | ACGT | 1 cut(s) | 426 |
| HpyCH4V | TGCA | 8 cut(s) | 177, 381, 590, 623, 717, 817, 979, 1066 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 535 |
| HpyF3I | CTNAG | 4 cut(s) | 721, 827, 897, 1121 |
| HpySE526I | ACGT | 1 cut(s) | 426 |
| Hsp92I | GRCGYC | 1 cut(s) | 426 |
| Hsp92II | CATG | 5 cut(s) | 691, 741, 792, 886, 1070 |
| Ksp22I | TGATCA | 1 cut(s) | 288 |
| Kzo9I | GATC | 5 cut(s) | 132, 288, 336, 567, 612 |
| LguI | GCTCTTC | 1 cut(s) | 1110 |
| LmnI | GCTCC | 1 cut(s) | 917 |
| LpnPI | CCDG | 7 cut(s) | 112, 309, 316, 708, 824, 849, 1178 |
| Lsp1109I | GCAGC | 1 cut(s) | 963 |
| LweI | GCATC | 2 cut(s) | 683, 1106 |
| MaeI | CTAG | 1 cut(s) | 92 |
| MaeII | ACGT | 1 cut(s) | 426 |
| MaeIII | GTNAC | 4 cut(s) | 517, 598, 963, 1138 |
| MalI | GATC | 5 cut(s) | 134, 290, 338, 569, 614 |
| MboI | GATC | 5 cut(s) | 132, 288, 336, 567, 612 |
| MhlI | GDGCHC | 1 cut(s) | 625 |
| MluCI | AATT | 6 cut(s) | 681, 753, 769, 856, 935, 949 |
| MlyI | GAGTC | 1 cut(s) | 525 |
| MmeI | TCCRAC | 1 cut(s) | 1169 |
| Mph1103I | ATGCAT | 1 cut(s) | 1068 |
| MroXI | GAANNNNTTC | 1 cut(s) | 695 |
| MseI | TTAA | 2 cut(s) | 161, 365 |
| MslI | CAYNNNNRTG | 1 cut(s) | 736 |
| Mva1269I | GAATGC | 2 cut(s) | 179, 383 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 535 |
| NdeII | GATC | 5 cut(s) | 132, 288, 336, 567, 612 |
| NlaIII | CATG | 5 cut(s) | 691, 741, 792, 886, 1070 |
| NlaIV | GGNNCC | 2 cut(s) | 760, 1163 |
| NmuCI | GTSAC | 3 cut(s) | 517, 598, 963 |
| NsiI | ATGCAT | 1 cut(s) | 1068 |
| PagI | TCATGA | 1 cut(s) | 687 |
| PciSI | GCTCTTC | 1 cut(s) | 1110 |
| PctI | GAATGC | 2 cut(s) | 179, 383 |
| PdmI | GAANNNNTTC | 1 cut(s) | 695 |
| PfeI | GAWTC | 5 cut(s) | 559, 632, 652, 691, 1106 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1151 |
| PkrI | GCNGC | 2 cut(s) | 876, 978 |
| PleI | GAGTC | 1 cut(s) | 524 |
| PpsI | GAGTC | 1 cut(s) | 524 |
| PspN4I | GGNNCC | 2 cut(s) | 760, 1163 |
| RseI | CAYNNNNRTG | 1 cut(s) | 736 |
| SapI | GCTCTTC | 1 cut(s) | 1110 |
| SaqAI | TTAA | 2 cut(s) | 161, 365 |
| SatI | GCNGC | 2 cut(s) | 875, 977 |
| Sau3AI | GATC | 5 cut(s) | 132, 288, 336, 567, 612 |
| SchI | GAGTC | 1 cut(s) | 525 |
| SduI | GDGCHC | 1 cut(s) | 625 |
| SfaNI | GCATC | 2 cut(s) | 683, 1106 |
| SfcI | CTRYAG | 2 cut(s) | 44, 248 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 736 |
| Sse9I | AATT | 6 cut(s) | 681, 753, 769, 856, 935, 949 |
| SsiI | CCGC | 1 cut(s) | 875 |
| SspMI | CTAG | 1 cut(s) | 92 |
| StyI | CCWWGG | 2 cut(s) | 496, 798 |
| TaaI | ACNGT | 4 cut(s) | 30, 48, 234, 252 |
| TaiI | ACGT | 1 cut(s) | 429 |
| TaqI | TCGA | 3 cut(s) | 525, 570, 615 |
| TaqII | GACCGA | 3 cut(s) | 33, 237, 1044 |
| TasI | AATT | 6 cut(s) | 681, 753, 769, 856, 935, 949 |
| TauI | GCSGC | 1 cut(s) | 877 |
| TfiI | GAWTC | 5 cut(s) | 559, 632, 652, 691, 1106 |
| Tru1I | TTAA | 2 cut(s) | 161, 365 |
| Tru9I | TTAA | 2 cut(s) | 161, 365 |
| TseFI | GTSAC | 3 cut(s) | 517, 598, 963 |
| TseI | GCWGC | 1 cut(s) | 976 |
| Tsp45I | GTSAC | 3 cut(s) | 517, 598, 963 |
| TspGWI | ACGGA | 2 cut(s) | 168, 372 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1151 |
| VneI | GTGCAC | 1 cut(s) | 621 |
| XapI | RAATTY | 2 cut(s) | 769, 949 |
| XbaI | TCTAGA | 1 cut(s) | 91 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 818 |
| XmiI | GTMKAC | 2 cut(s) | 43, 247 |
| XmnI | GAANNNNTTC | 1 cut(s) | 695 |
| XspI | CTAG | 1 cut(s) | 92 |
| ZraI | GACGTC | 1 cut(s) | 427 |
| Zsp2I | ATGCAT | 1 cut(s) | 1068 |