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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 242 |
| AccB1I | GGYRCC | 1 cut(s) | 149 |
| AccI | GTMKAC | 1 cut(s) | 141 |
| AciI | CCGC | 1 cut(s) | 266 |
| AcoI | YGGCCR | 1 cut(s) | 335 |
| AcsI | RAATTY | 2 cut(s) | 160, 340 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 58 |
| AgsI | TTSAA | 1 cut(s) | 31 |
| AjnI | CCWGG | 1 cut(s) | 128 |
| AluBI | AGCT | 3 cut(s) | 287, 367, 427 |
| AluI | AGCT | 3 cut(s) | 287, 367, 427 |
| Alw21I | GWGCWC | 1 cut(s) | 16 |
| Alw44I | GTGCAC | 1 cut(s) | 12 |
| AoxI | GGCC | 1 cut(s) | 335 |
| ApaLI | GTGCAC | 1 cut(s) | 12 |
| ApeKI | GCWGC | 1 cut(s) | 367 |
| ApoI | RAATTY | 2 cut(s) | 160, 340 |
| AxyI | CCTNAGG | 1 cut(s) | 112 |
| BaeGI | GKGCMC | 1 cut(s) | 16 |
| BalI | TGGCCA | 1 cut(s) | 337 |
| BanI | GGYRCC | 1 cut(s) | 149 |
| BbsI | GAAGAC | 3 cut(s) | 240, 299, 444 |
| Bbv12I | GWGCWC | 1 cut(s) | 16 |
| BbvI | GCAGC | 1 cut(s) | 354 |
| BccI | CCATC | 3 cut(s) | 210, 295, 345 |
| BciT130I | CCWGG | 1 cut(s) | 130 |
| BciVI | GTATCC | 1 cut(s) | 103 |
| BfuI | GTATCC | 1 cut(s) | 103 |
| BisI | GCNGC | 2 cut(s) | 266, 368 |
| BlsI | GCNGC | 2 cut(s) | 267, 369 |
| Bme1390I | CCNGG | 1 cut(s) | 130 |
| BmiI | GGNNCC | 1 cut(s) | 151 |
| BmrFI | CCNGG | 1 cut(s) | 130 |
| BmsI | GCATC | 2 cut(s) | 74, 91 |
| BpiI | GAAGAC | 3 cut(s) | 240, 299, 444 |
| BsaJI | CCNNGG | 1 cut(s) | 189 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 58 |
| Bse21I | CCTNAGG | 1 cut(s) | 112 |
| Bse3DI | GCAATG | 1 cut(s) | 459 |
| BseBI | CCWGG | 1 cut(s) | 130 |
| BseDI | CCNNGG | 1 cut(s) | 189 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 58 |
| BseMI | GCAATG | 1 cut(s) | 459 |
| BseMII | CTCAG | 2 cut(s) | 126, 279 |
| BseRI | GAGGAG | 1 cut(s) | 321 |
| BseSI | GKGCMC | 1 cut(s) | 16 |
| BseXI | GCAGC | 1 cut(s) | 354 |
| BsgI | GTGCAG | 3 cut(s) | 91, 191, 353 |
| BshFI | GGCC | 1 cut(s) | 337 |
| BshNI | GGYRCC | 1 cut(s) | 149 |
| BsiHKAI | GWGCWC | 1 cut(s) | 16 |
| BslFI | GGGAC | 1 cut(s) | 35 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 58 |
| BsmFI | GGGAC | 1 cut(s) | 35 |
| BsnI | GGCC | 1 cut(s) | 337 |
| Bsp1286I | GDGCHC | 1 cut(s) | 16 |
| Bsp143I | GATC | 1 cut(s) | 214 |
| BspACI | CCGC | 1 cut(s) | 266 |
| BspANI | GGCC | 1 cut(s) | 337 |
| BspCNI | CTCAG | 2 cut(s) | 125, 280 |
| BspLI | GGNNCC | 1 cut(s) | 151 |
| BspT107I | GGYRCC | 1 cut(s) | 149 |
| BsrDI | GCAATG | 1 cut(s) | 459 |
| BssECI | CCNNGG | 1 cut(s) | 189 |
| BssMI | GATC | 1 cut(s) | 214 |
| BssT1I | CCWWGG | 1 cut(s) | 189 |
| Bst2UI | CCWGG | 1 cut(s) | 130 |
| BstDEI | CTNAG | 3 cut(s) | 112, 218, 288 |
| BstKTI | GATC | 1 cut(s) | 217 |
| BstMBI | GATC | 1 cut(s) | 214 |
| BstNI | CCWGG | 1 cut(s) | 130 |
| BstSCI | CCNGG | 1 cut(s) | 128 |
| BstSLI | GKGCMC | 1 cut(s) | 16 |
| BstV1I | GCAGC | 1 cut(s) | 354 |
| BstV2I | GAAGAC | 3 cut(s) | 240, 299, 444 |
| Bsu36I | CCTNAGG | 1 cut(s) | 112 |
| BsuI | GTATCC | 1 cut(s) | 103 |
| BsuRI | GGCC | 1 cut(s) | 337 |
| BtgZI | GCGATG | 1 cut(s) | 51 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 42, 77 |
| CviAII | CATG | 4 cut(s) | 79, 180, 274, 458 |
| CviJI | RGCY | 4 cut(s) | 287, 337, 367, 427 |
| CviKI_1 | RGCY | 4 cut(s) | 287, 337, 367, 427 |
| DdeI | CTNAG | 3 cut(s) | 112, 218, 288 |
| DpnI | GATC | 1 cut(s) | 216 |
| DpnII | GATC | 1 cut(s) | 214 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 242 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 242 |
| EaeI | YGGCCR | 1 cut(s) | 335 |
| Eco130I | CCWWGG | 1 cut(s) | 189 |
| Eco81I | CCTNAGG | 1 cut(s) | 112 |
| EcoRI | GAATTC | 1 cut(s) | 160 |
| EcoRII | CCWGG | 1 cut(s) | 128 |
| EcoT14I | CCWWGG | 1 cut(s) | 189 |
| EcoT22I | ATGCAT | 2 cut(s) | 84, 459 |
| ErhI | CCWWGG | 1 cut(s) | 189 |
| FaeI | CATG | 4 cut(s) | 82, 183, 277, 461 |
| FaiI | YATR | 6 cut(s) | 80, 181, 275, 347, 459, 490 |
| FaqI | GGGAC | 1 cut(s) | 35 |
| FatI | CATG | 4 cut(s) | 78, 179, 273, 457 |
| FblI | GTMKAC | 1 cut(s) | 141 |
| Fnu4HI | GCNGC | 2 cut(s) | 266, 368 |
| Fsp4HI | GCNGC | 2 cut(s) | 266, 368 |
| GluI | GCNGC | 2 cut(s) | 266, 368 |
| HaeIII | GGCC | 1 cut(s) | 337 |
| Hin1II | CATG | 4 cut(s) | 82, 183, 277, 461 |
| HinfI | GANTC | 2 cut(s) | 23, 43 |
| Hpy166II | GTNNAC | 2 cut(s) | 14, 142 |
| Hpy188III | TCNNGA | 1 cut(s) | 316 |
| Hpy8I | GTNNAC | 2 cut(s) | 14, 142 |
| Hpy99I | CGWCG | 2 cut(s) | 174, 365 |
| HpyAV | CCTTC | 1 cut(s) | 106 |
| HpyCH4V | TGCA | 7 cut(s) | 14, 82, 108, 208, 370, 457, 488 |
| HpyF3I | CTNAG | 3 cut(s) | 112, 218, 288 |
| Hsp92II | CATG | 4 cut(s) | 82, 183, 277, 461 |
| Kzo9I | GATC | 1 cut(s) | 214 |
| LmnI | GCTCC | 1 cut(s) | 308 |
| LpnPI | CCDG | 5 cut(s) | 99, 115, 142, 215, 240 |
| Lsp1109I | GCAGC | 1 cut(s) | 354 |
| LweI | GCATC | 2 cut(s) | 74, 91 |
| MaeIII | GTNAC | 1 cut(s) | 354 |
| MalI | GATC | 1 cut(s) | 216 |
| MboI | GATC | 1 cut(s) | 214 |
| MboII | GAAGA | 4 cut(s) | 245, 304, 449, 483 |
| MhlI | GDGCHC | 1 cut(s) | 16 |
| MlsI | TGGCCA | 1 cut(s) | 337 |
| MluCI | AATT | 4 cut(s) | 160, 247, 326, 340 |
| MluNI | TGGCCA | 1 cut(s) | 337 |
| MnlI | CCTC | 6 cut(s) | 52, 121, 299, 400, 427, 473 |
| Mox20I | TGGCCA | 1 cut(s) | 337 |
| Mph1103I | ATGCAT | 2 cut(s) | 84, 459 |
| MscI | TGGCCA | 1 cut(s) | 337 |
| Msp20I | TGGCCA | 1 cut(s) | 337 |
| MspR9I | CCNGG | 1 cut(s) | 130 |
| MvaI | CCWGG | 1 cut(s) | 130 |
| NdeII | GATC | 1 cut(s) | 214 |
| NlaIII | CATG | 4 cut(s) | 82, 183, 277, 461 |
| NlaIV | GGNNCC | 1 cut(s) | 151 |
| NmuCI | GTSAC | 1 cut(s) | 354 |
| NsiI | ATGCAT | 2 cut(s) | 84, 459 |
| PfeI | GAWTC | 2 cut(s) | 23, 43 |
| PfoI | TCCNGGA | 1 cut(s) | 128 |
| PkrI | GCNGC | 2 cut(s) | 267, 369 |
| Psp6I | CCWGG | 1 cut(s) | 128 |
| PspGI | CCWGG | 1 cut(s) | 128 |
| PspN4I | GGNNCC | 1 cut(s) | 151 |
| SatI | GCNGC | 2 cut(s) | 266, 368 |
| Sau3AI | GATC | 1 cut(s) | 214 |
| ScrFI | CCNGG | 1 cut(s) | 130 |
| SduI | GDGCHC | 1 cut(s) | 16 |
| SetI | ASST | 8 cut(s) | 63, 113, 118, 191, 259, 289, 369, 429 |
| SfaNI | GCATC | 2 cut(s) | 74, 91 |
| Sse9I | AATT | 4 cut(s) | 160, 247, 326, 340 |
| SsiI | CCGC | 1 cut(s) | 266 |
| StyD4I | CCNGG | 1 cut(s) | 128 |
| StyI | CCWWGG | 1 cut(s) | 189 |
| TaqI | TCGA | 1 cut(s) | 363 |
| TaqII | GACCGA | 1 cut(s) | 435 |
| TasI | AATT | 4 cut(s) | 160, 247, 326, 340 |
| TauI | GCSGC | 1 cut(s) | 268 |
| TfiI | GAWTC | 2 cut(s) | 23, 43 |
| TseFI | GTSAC | 1 cut(s) | 354 |
| TseI | GCWGC | 1 cut(s) | 367 |
| Tsp45I | GTSAC | 1 cut(s) | 354 |
| TspDTI | ATGAA | 3 cut(s) | 168, 334, 339 |
| VneI | GTGCAC | 1 cut(s) | 12 |
| XapI | RAATTY | 2 cut(s) | 160, 340 |
| XmiI | GTMKAC | 1 cut(s) | 141 |
| Zsp2I | ATGCAT | 2 cut(s) | 84, 459 |