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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 287 |
| AccB1I | GGYRCC | 1 cut(s) | 194 |
| AciI | CCGC | 1 cut(s) | 311 |
| AcsI | RAATTY | 1 cut(s) | 205 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 103 |
| AgsI | TTSAA | 2 cut(s) | 76, 595 |
| AjnI | CCWGG | 1 cut(s) | 173 |
| AluBI | AGCT | 4 cut(s) | 332, 412, 491, 622 |
| AluI | AGCT | 4 cut(s) | 332, 412, 491, 622 |
| Alw21I | GWGCWC | 1 cut(s) | 61 |
| Alw26I | GTCTC | 1 cut(s) | 560 |
| Alw44I | GTGCAC | 1 cut(s) | 57 |
| ApaLI | GTGCAC | 1 cut(s) | 57 |
| ApeKI | GCWGC | 1 cut(s) | 412 |
| ApoI | RAATTY | 1 cut(s) | 205 |
| ArsI | GACNNNNNNTTYG | 1 cut(s) | 31 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 131 |
| AsuNHI | GCTAGC | 1 cut(s) | 622 |
| AxyI | CCTNAGG | 1 cut(s) | 157 |
| BaeGI | GKGCMC | 1 cut(s) | 61 |
| BanI | GGYRCC | 1 cut(s) | 194 |
| BbsI | GAAGAC | 2 cut(s) | 285, 344 |
| Bbv12I | GWGCWC | 1 cut(s) | 61 |
| BbvI | GCAGC | 1 cut(s) | 399 |
| BccI | CCATC | 3 cut(s) | 255, 340, 390 |
| BciT130I | CCWGG | 1 cut(s) | 175 |
| BciVI | GTATCC | 1 cut(s) | 148 |
| BcoDI | GTCTC | 1 cut(s) | 560 |
| BfaI | CTAG | 1 cut(s) | 623 |
| BfuI | GTATCC | 1 cut(s) | 148 |
| BisI | GCNGC | 2 cut(s) | 311, 413 |
| BlsI | GCNGC | 2 cut(s) | 312, 414 |
| Bme1390I | CCNGG | 1 cut(s) | 175 |
| BmiI | GGNNCC | 1 cut(s) | 196 |
| BmrFI | CCNGG | 1 cut(s) | 175 |
| BmsI | GCATC | 2 cut(s) | 13, 119 |
| BmtI | GCTAGC | 1 cut(s) | 626 |
| BpiI | GAAGAC | 2 cut(s) | 285, 344 |
| Bpu10I | CCTNAGC | 1 cut(s) | 408 |
| BpuEI | CTTGAG | 1 cut(s) | 567 |
| Bsa29I | ATCGAT | 1 cut(s) | 51 |
| BsaJI | CCNNGG | 1 cut(s) | 234 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 103 |
| Bse21I | CCTNAGG | 1 cut(s) | 157 |
| BseBI | CCWGG | 1 cut(s) | 175 |
| BseCI | ATCGAT | 1 cut(s) | 51 |
| BseDI | CCNNGG | 1 cut(s) | 234 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 103 |
| BseMII | CTCAG | 4 cut(s) | 171, 324, 399, 560 |
| BseRI | GAGGAG | 1 cut(s) | 366 |
| BseSI | GKGCMC | 1 cut(s) | 61 |
| BseXI | GCAGC | 1 cut(s) | 399 |
| BsgI | GTGCAG | 3 cut(s) | 136, 236, 398 |
| BshNI | GGYRCC | 1 cut(s) | 194 |
| BshVI | ATCGAT | 1 cut(s) | 51 |
| BsiHKAI | GWGCWC | 1 cut(s) | 61 |
| BslFI | GGGAC | 1 cut(s) | 80 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 103 |
| BsmAI | GTCTC | 1 cut(s) | 560 |
| BsmFI | GGGAC | 1 cut(s) | 80 |
| Bsp1286I | GDGCHC | 1 cut(s) | 61 |
| Bsp143I | GATC | 1 cut(s) | 48 |
| BspACI | CCGC | 1 cut(s) | 311 |
| BspCNI | CTCAG | 4 cut(s) | 170, 325, 400, 559 |
| BspDI | ATCGAT | 1 cut(s) | 51 |
| BspHI | TCATGA | 1 cut(s) | 123 |
| BspLI | GGNNCC | 1 cut(s) | 196 |
| BspOI | GCTAGC | 1 cut(s) | 626 |
| BspT107I | GGYRCC | 1 cut(s) | 194 |
| BssECI | CCNNGG | 1 cut(s) | 234 |
| BssMI | GATC | 1 cut(s) | 48 |
| BssT1I | CCWWGG | 1 cut(s) | 234 |
| Bst2UI | CCWGG | 1 cut(s) | 175 |
| Bst4CI | ACNGT | 1 cut(s) | 171 |
| Bst6I | CTCTTC | 2 cut(s) | 497, 603 |
| BstC8I | GCNNGC | 1 cut(s) | 624 |
| BstDEI | CTNAG | 5 cut(s) | 157, 263, 333, 408, 546 |
| BstKTI | GATC | 1 cut(s) | 51 |
| BstMAI | GTCTC | 1 cut(s) | 560 |
| BstMBI | GATC | 1 cut(s) | 48 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 451, 628 |
| BstNI | CCWGG | 1 cut(s) | 175 |
| BstSCI | CCNGG | 1 cut(s) | 173 |
| BstSLI | GKGCMC | 1 cut(s) | 61 |
| BstV1I | GCAGC | 1 cut(s) | 399 |
| BstV2I | GAAGAC | 2 cut(s) | 285, 344 |
| Bsu15I | ATCGAT | 1 cut(s) | 51 |
| Bsu36I | CCTNAGG | 1 cut(s) | 157 |
| BsuI | GTATCC | 1 cut(s) | 148 |
| BsuTUI | ATCGAT | 1 cut(s) | 51 |
| BtgZI | GCGATG | 2 cut(s) | 59, 96 |
| BtsIMutI | CAGTG | 1 cut(s) | 167 |
| Cac8I | GCNNGC | 1 cut(s) | 624 |
| CciI | TCATGA | 1 cut(s) | 123 |
| ClaI | ATCGAT | 1 cut(s) | 51 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 87, 122 |
| CviAII | CATG | 3 cut(s) | 124, 225, 319 |
| CviJI | RGCY | 5 cut(s) | 332, 412, 491, 622, 665 |
| CviKI_1 | RGCY | 5 cut(s) | 332, 412, 491, 622, 665 |
| DdeI | CTNAG | 5 cut(s) | 157, 263, 333, 408, 546 |
| DpnI | GATC | 1 cut(s) | 50 |
| DpnII | GATC | 1 cut(s) | 48 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 287 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 287 |
| Eam1104I | CTCTTC | 2 cut(s) | 497, 603 |
| EarI | CTCTTC | 2 cut(s) | 497, 603 |
| Eco130I | CCWWGG | 1 cut(s) | 234 |
| Eco81I | CCTNAGG | 1 cut(s) | 157 |
| EcoRI | GAATTC | 1 cut(s) | 205 |
| EcoRII | CCWGG | 1 cut(s) | 173 |
| EcoT14I | CCWWGG | 1 cut(s) | 234 |
| ErhI | CCWWGG | 1 cut(s) | 234 |
| FaeI | CATG | 3 cut(s) | 127, 228, 322 |
| FaiI | YATR | 6 cut(s) | 125, 226, 320, 385, 392, 518 |
| FaqI | GGGAC | 1 cut(s) | 80 |
| FatI | CATG | 3 cut(s) | 123, 224, 318 |
| Fnu4HI | GCNGC | 2 cut(s) | 311, 413 |
| Fsp4HI | GCNGC | 2 cut(s) | 311, 413 |
| FspBI | CTAG | 1 cut(s) | 623 |
| GluI | GCNGC | 2 cut(s) | 311, 413 |
| Hin1II | CATG | 3 cut(s) | 127, 228, 322 |
| HincII | GTYRAC | 1 cut(s) | 603 |
| HindII | GTYRAC | 1 cut(s) | 603 |
| HinfI | GANTC | 3 cut(s) | 68, 127, 524 |
| Hpy166II | GTNNAC | 2 cut(s) | 59, 603 |
| Hpy188I | TCNGA | 2 cut(s) | 501, 549 |
| Hpy188III | TCNNGA | 3 cut(s) | 124, 361, 584 |
| Hpy8I | GTNNAC | 2 cut(s) | 59, 603 |
| Hpy99I | CGWCG | 1 cut(s) | 219 |
| HpyAV | CCTTC | 2 cut(s) | 151, 505 |
| HpyCH4III | ACNGT | 1 cut(s) | 171 |
| HpyCH4V | TGCA | 6 cut(s) | 26, 59, 153, 253, 390, 415 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 451, 628 |
| HpyF3I | CTNAG | 5 cut(s) | 157, 263, 333, 408, 546 |
| Hsp92II | CATG | 3 cut(s) | 127, 228, 322 |
| Kzo9I | GATC | 1 cut(s) | 48 |
| LmnI | GCTCC | 1 cut(s) | 353 |
| LpnPI | CCDG | 6 cut(s) | 144, 160, 187, 260, 420, 587 |
| Lsp1109I | GCAGC | 1 cut(s) | 399 |
| LweI | GCATC | 2 cut(s) | 13, 119 |
| MaeI | CTAG | 1 cut(s) | 623 |
| MaeIII | GTNAC | 3 cut(s) | 34, 399, 538 |
| MalI | GATC | 1 cut(s) | 50 |
| MboI | GATC | 1 cut(s) | 48 |
| MboII | GAAGA | 8 cut(s) | 290, 349, 497, 514, 545, 578, 607, 620 |
| MhlI | GDGCHC | 1 cut(s) | 61 |
| MluCI | AATT | 4 cut(s) | 189, 205, 292, 371 |
| MlyI | GAGTC | 1 cut(s) | 518 |
| MmeI | TCCRAC | 1 cut(s) | 510 |
| MnlI | CCTC | 3 cut(s) | 97, 166, 344 |
| MroXI | GAANNNNTTC | 1 cut(s) | 131 |
| MspR9I | CCNGG | 1 cut(s) | 175 |
| MvaI | CCWGG | 1 cut(s) | 175 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 451, 628 |
| NdeII | GATC | 1 cut(s) | 48 |
| NheI | GCTAGC | 1 cut(s) | 622 |
| NlaIII | CATG | 3 cut(s) | 127, 228, 322 |
| NlaIV | GGNNCC | 1 cut(s) | 196 |
| NmuCI | GTSAC | 2 cut(s) | 34, 399 |
| PagI | TCATGA | 1 cut(s) | 123 |
| PdmI | GAANNNNTTC | 1 cut(s) | 131 |
| PfeI | GAWTC | 2 cut(s) | 68, 127 |
| PfoI | TCCNGGA | 1 cut(s) | 173 |
| PkrI | GCNGC | 2 cut(s) | 312, 414 |
| PleI | GAGTC | 1 cut(s) | 518 |
| PpsI | GAGTC | 1 cut(s) | 518 |
| Psp6I | CCWGG | 1 cut(s) | 173 |
| PspGI | CCWGG | 1 cut(s) | 173 |
| PspN4I | GGNNCC | 1 cut(s) | 196 |
| SatI | GCNGC | 2 cut(s) | 311, 413 |
| Sau3AI | GATC | 1 cut(s) | 48 |
| SchI | GAGTC | 1 cut(s) | 518 |
| ScrFI | CCNGG | 1 cut(s) | 175 |
| SduI | GDGCHC | 1 cut(s) | 61 |
| SetI | ASST | 8 cut(s) | 108, 158, 163, 236, 334, 414, 493, 624 |
| SfaNI | GCATC | 2 cut(s) | 13, 119 |
| SmlI | CTYRAG | 1 cut(s) | 582 |
| SmoI | CTYRAG | 1 cut(s) | 582 |
| Sse9I | AATT | 4 cut(s) | 189, 205, 292, 371 |
| SsiI | CCGC | 1 cut(s) | 311 |
| SspMI | CTAG | 1 cut(s) | 623 |
| StyD4I | CCNGG | 1 cut(s) | 173 |
| StyI | CCWWGG | 1 cut(s) | 234 |
| TaaI | ACNGT | 1 cut(s) | 171 |
| TaqI | TCGA | 2 cut(s) | 6, 51 |
| TaqII | GACCGA | 1 cut(s) | 620 |
| TasI | AATT | 4 cut(s) | 189, 205, 292, 371 |
| TauI | GCSGC | 1 cut(s) | 313 |
| TfiI | GAWTC | 2 cut(s) | 68, 127 |
| TscAI | CASTG | 1 cut(s) | 174 |
| TseFI | GTSAC | 2 cut(s) | 34, 399 |
| TseI | GCWGC | 1 cut(s) | 412 |
| Tsp45I | GTSAC | 2 cut(s) | 34, 399 |
| TspDTI | ATGAA | 5 cut(s) | 140, 213, 384, 524, 630 |
| TspRI | CASTG | 1 cut(s) | 174 |
| VneI | GTGCAC | 1 cut(s) | 57 |
| XapI | RAATTY | 1 cut(s) | 205 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 254 |
| XmnI | GAANNNNTTC | 1 cut(s) | 131 |
| XspI | CTAG | 1 cut(s) | 623 |