protein modification by small protein conjugation or removal
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 645 |
| AcsI | RAATTY | 3 cut(s) | 29, 49, 539 |
| AcuI | CTGAAG | 2 cut(s) | 584, 824 |
| AcyI | GRCGYC | 1 cut(s) | 115 |
| AgsI | TTSAA | 7 cut(s) | 344, 401, 416, 515, 706, 790, 799 |
| AjnI | CCWGG | 1 cut(s) | 327 |
| AluBI | AGCT | 6 cut(s) | 17, 752, 802, 824, 866, 908 |
| AluI | AGCT | 6 cut(s) | 17, 752, 802, 824, 866, 908 |
| Alw26I | GTCTC | 3 cut(s) | 168, 596, 752 |
| Ama87I | CYCGRG | 1 cut(s) | 914 |
| AoxI | GGCC | 4 cut(s) | 123, 351, 424, 645 |
| ApeKI | GCWGC | 3 cut(s) | 105, 749, 899 |
| ApoI | RAATTY | 3 cut(s) | 29, 49, 539 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 920, 952 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 29 |
| AspLEI | GCGC | 1 cut(s) | 612 |
| AsuHPI | GGTGA | 4 cut(s) | 385, 609, 767, 886 |
| AvaI | CYCGRG | 1 cut(s) | 914 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 557, 589 |
| BbsI | GAAGAC | 2 cut(s) | 220, 572 |
| BbvI | GCAGC | 3 cut(s) | 92, 761, 886 |
| BccI | CCATC | 2 cut(s) | 105, 201 |
| BceAI | ACGGC | 1 cut(s) | 118 |
| BciT130I | CCWGG | 1 cut(s) | 329 |
| BciVI | GTATCC | 1 cut(s) | 566 |
| BclI | TGATCA | 5 cut(s) | 10, 85, 154, 679, 718 |
| BcoDI | GTCTC | 3 cut(s) | 168, 596, 752 |
| BfmI | CTRYAG | 2 cut(s) | 106, 237 |
| BfuI | GTATCC | 1 cut(s) | 566 |
| BisI | GCNGC | 3 cut(s) | 106, 750, 900 |
| BlsI | GCNGC | 3 cut(s) | 107, 751, 901 |
| Bme1390I | CCNGG | 1 cut(s) | 329 |
| BmeT110I | CYCGRG | 1 cut(s) | 914 |
| BmiI | GGNNCC | 1 cut(s) | 333 |
| BmrFI | CCNGG | 1 cut(s) | 329 |
| BmsI | GCATC | 2 cut(s) | 640, 756 |
| BpiI | GAAGAC | 2 cut(s) | 220, 572 |
| BpuEI | CTTGAG | 1 cut(s) | 332 |
| BsaHI | GRCGYC | 1 cut(s) | 115 |
| BsaJI | CCNNGG | 1 cut(s) | 132 |
| Bse118I | RCCGGY | 1 cut(s) | 612 |
| Bse1I | ACTGG | 1 cut(s) | 293 |
| Bse3DI | GCAATG | 2 cut(s) | 194, 528 |
| BseBI | CCWGG | 1 cut(s) | 329 |
| BseDI | CCNNGG | 1 cut(s) | 132 |
| BseGI | GGATG | 3 cut(s) | 212, 463, 771 |
| BseMI | GCAATG | 2 cut(s) | 194, 528 |
| BseMII | CTCAG | 4 cut(s) | 60, 174, 839, 881 |
| BseNI | ACTGG | 1 cut(s) | 293 |
| BseRI | GAGGAG | 1 cut(s) | 46 |
| BseXI | GCAGC | 3 cut(s) | 92, 761, 886 |
| BshFI | GGCC | 4 cut(s) | 125, 353, 426, 647 |
| BsiHKCI | CYCGRG | 1 cut(s) | 914 |
| BsiSI | CCGG | 1 cut(s) | 613 |
| BsmAI | GTCTC | 3 cut(s) | 168, 596, 752 |
| BsnI | GGCC | 4 cut(s) | 125, 353, 426, 647 |
| BsoBI | CYCGRG | 1 cut(s) | 914 |
| Bsp143I | GATC | 5 cut(s) | 10, 85, 154, 679, 718 |
| BspANI | GGCC | 4 cut(s) | 125, 353, 426, 647 |
| BspCNI | CTCAG | 4 cut(s) | 61, 175, 838, 880 |
| BspLI | GGNNCC | 1 cut(s) | 333 |
| BspMAI | CTGCAG | 1 cut(s) | 110 |
| BsrDI | GCAATG | 2 cut(s) | 194, 528 |
| BsrFI | RCCGGY | 1 cut(s) | 612 |
| BsrI | ACTGG | 1 cut(s) | 293 |
| BssAI | RCCGGY | 1 cut(s) | 612 |
| BssECI | CCNNGG | 1 cut(s) | 132 |
| BssMI | GATC | 5 cut(s) | 10, 85, 154, 679, 718 |
| BssNI | GRCGYC | 1 cut(s) | 115 |
| BssT1I | CCWWGG | 1 cut(s) | 132 |
| Bst2UI | CCWGG | 1 cut(s) | 329 |
| Bst4CI | ACNGT | 3 cut(s) | 225, 607, 932 |
| Bst6I | CTCTTC | 2 cut(s) | 497, 777 |
| BstACI | GRCGYC | 1 cut(s) | 115 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 659 |
| BstDEI | CTNAG | 4 cut(s) | 69, 183, 825, 867 |
| BstEII | GGTNACC | 1 cut(s) | 615 |
| BstF5I | GGATG | 3 cut(s) | 212, 463, 771 |
| BstHHI | GCGC | 1 cut(s) | 612 |
| BstKTI | GATC | 5 cut(s) | 13, 88, 157, 682, 721 |
| BstMAI | GTCTC | 3 cut(s) | 168, 596, 752 |
| BstMBI | GATC | 5 cut(s) | 10, 85, 154, 679, 718 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 659, 905 |
| BstNI | CCWGG | 1 cut(s) | 329 |
| BstPI | GGTNACC | 1 cut(s) | 615 |
| BstSCI | CCNGG | 1 cut(s) | 327 |
| BstSFI | CTRYAG | 2 cut(s) | 106, 237 |
| BstV1I | GCAGC | 3 cut(s) | 92, 761, 886 |
| BstV2I | GAAGAC | 2 cut(s) | 220, 572 |
| BsuI | GTATCC | 1 cut(s) | 566 |
| BsuRI | GGCC | 4 cut(s) | 125, 353, 426, 647 |
| BtsCI | GGATG | 3 cut(s) | 212, 463, 771 |
| BtsIMutI | CAGTG | 1 cut(s) | 286 |
| CfoI | GCGC | 1 cut(s) | 612 |
| Cfr10I | RCCGGY | 1 cut(s) | 612 |
| CseI | GACGC | 1 cut(s) | 104 |
| CsiI | ACCWGGT | 1 cut(s) | 327 |
| CviAII | CATG | 5 cut(s) | 454, 473, 577, 683, 770 |
| DdeI | CTNAG | 4 cut(s) | 69, 183, 825, 867 |
| DpnI | GATC | 5 cut(s) | 12, 87, 156, 681, 720 |
| DpnII | GATC | 5 cut(s) | 10, 85, 154, 679, 718 |
| EaeI | YGGCCR | 1 cut(s) | 645 |
| Eam1104I | CTCTTC | 2 cut(s) | 497, 777 |
| EarI | CTCTTC | 2 cut(s) | 497, 777 |
| Eco130I | CCWWGG | 1 cut(s) | 132 |
| Eco57I | CTGAAG | 2 cut(s) | 584, 824 |
| Eco88I | CYCGRG | 1 cut(s) | 914 |
| Eco91I | GGTNACC | 1 cut(s) | 615 |
| EcoO65I | GGTNACC | 1 cut(s) | 615 |
| EcoRII | CCWGG | 1 cut(s) | 327 |
| EcoT14I | CCWWGG | 1 cut(s) | 132 |
| EcoT22I | ATGCAT | 2 cut(s) | 655, 771 |
| ErhI | CCWWGG | 1 cut(s) | 132 |
| FaeI | CATG | 5 cut(s) | 457, 476, 580, 686, 773 |
| FatI | CATG | 5 cut(s) | 453, 472, 576, 682, 769 |
| FauNDI | CATATG | 1 cut(s) | 655 |
| FbaI | TGATCA | 5 cut(s) | 10, 85, 154, 679, 718 |
| Fnu4HI | GCNGC | 3 cut(s) | 106, 750, 900 |
| FokI | GGATG | 3 cut(s) | 219, 470, 778 |
| Fsp4HI | GCNGC | 3 cut(s) | 106, 750, 900 |
| GlaI | GCGC | 1 cut(s) | 611 |
| GluI | GCNGC | 3 cut(s) | 106, 750, 900 |
| HaeIII | GGCC | 4 cut(s) | 125, 353, 426, 647 |
| HapII | CCGG | 1 cut(s) | 613 |
| HgaI | GACGC | 1 cut(s) | 104 |
| HhaI | GCGC | 1 cut(s) | 612 |
| Hin1I | GRCGYC | 1 cut(s) | 115 |
| Hin1II | CATG | 5 cut(s) | 457, 476, 580, 686, 773 |
| Hin6I | GCGC | 1 cut(s) | 610 |
| HinP1I | GCGC | 1 cut(s) | 610 |
| HincII | GTYRAC | 1 cut(s) | 463 |
| HindII | GTYRAC | 1 cut(s) | 463 |
| HinfI | GANTC | 5 cut(s) | 185, 191, 443, 668, 760 |
| HpaII | CCGG | 1 cut(s) | 613 |
| HphI | GGTGA | 4 cut(s) | 385, 609, 767, 886 |
| Hpy166II | GTNNAC | 1 cut(s) | 463 |
| Hpy188III | TCNNGA | 4 cut(s) | 94, 173, 254, 413 |
| Hpy8I | GTNNAC | 1 cut(s) | 463 |
| HpyAV | CCTTC | 5 cut(s) | 370, 492, 730, 784, 871 |
| HpyCH4III | ACNGT | 3 cut(s) | 225, 607, 932 |
| HpyCH4IV | ACGT | 2 cut(s) | 177, 271 |
| HpyCH4V | TGCA | 6 cut(s) | 64, 108, 533, 653, 662, 769 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 659, 905 |
| HpyF3I | CTNAG | 4 cut(s) | 69, 183, 825, 867 |
| HpySE526I | ACGT | 2 cut(s) | 177, 271 |
| Hsp92I | GRCGYC | 1 cut(s) | 115 |
| Hsp92II | CATG | 5 cut(s) | 457, 476, 580, 686, 773 |
| HspAI | GCGC | 1 cut(s) | 610 |
| Ksp22I | TGATCA | 5 cut(s) | 10, 85, 154, 679, 718 |
| Kzo9I | GATC | 5 cut(s) | 10, 85, 154, 679, 718 |
| LmnI | GCTCC | 1 cut(s) | 913 |
| Lsp1109I | GCAGC | 3 cut(s) | 92, 761, 886 |
| LweI | GCATC | 2 cut(s) | 640, 756 |
| MabI | ACCWGGT | 1 cut(s) | 327 |
| MaeII | ACGT | 2 cut(s) | 177, 271 |
| MaeIII | GTNAC | 3 cut(s) | 585, 615, 724 |
| MalI | GATC | 5 cut(s) | 12, 87, 156, 681, 720 |
| MboI | GATC | 5 cut(s) | 10, 85, 154, 679, 718 |
| MboII | GAAGA | 8 cut(s) | 37, 225, 368, 514, 577, 718, 721, 794 |
| MluCI | AATT | 4 cut(s) | 29, 49, 539, 774 |
| MlyI | GAGTC | 2 cut(s) | 194, 754 |
| MmeI | TCCRAC | 2 cut(s) | 675, 810 |
| MnlI | CCTC | 6 cut(s) | 67, 345, 400, 739, 827, 869 |
| Mph1103I | ATGCAT | 2 cut(s) | 655, 771 |
| MroXI | GAANNNNTTC | 1 cut(s) | 29 |
| MseI | TTAA | 3 cut(s) | 45, 431, 690 |
| MslI | CAYNNNNRTG | 1 cut(s) | 581 |
| MspA1I | CMGCKG | 1 cut(s) | 752 |
| MspI | CCGG | 1 cut(s) | 613 |
| MspR9I | CCNGG | 1 cut(s) | 329 |
| MvaI | CCWGG | 1 cut(s) | 329 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 659, 905 |
| NdeI | CATATG | 1 cut(s) | 655 |
| NdeII | GATC | 5 cut(s) | 10, 85, 154, 679, 718 |
| NlaIII | CATG | 5 cut(s) | 457, 476, 580, 686, 773 |
| NlaIV | GGNNCC | 1 cut(s) | 333 |
| NmuCI | GTSAC | 2 cut(s) | 615, 724 |
| NsiI | ATGCAT | 2 cut(s) | 655, 771 |
| PdmI | GAANNNNTTC | 1 cut(s) | 29 |
| PfeI | GAWTC | 3 cut(s) | 191, 443, 668 |
| PkrI | GCNGC | 3 cut(s) | 107, 751, 901 |
| PleI | GAGTC | 2 cut(s) | 193, 754 |
| PpsI | GAGTC | 2 cut(s) | 193, 754 |
| Psp6I | CCWGG | 1 cut(s) | 327 |
| PspEI | GGTNACC | 1 cut(s) | 615 |
| PspGI | CCWGG | 1 cut(s) | 327 |
| PspN4I | GGNNCC | 1 cut(s) | 333 |
| PstI | CTGCAG | 1 cut(s) | 110 |
| PvuII | CAGCTG | 1 cut(s) | 752 |
| RseI | CAYNNNNRTG | 1 cut(s) | 581 |
| SaqAI | TTAA | 3 cut(s) | 45, 431, 690 |
| SatI | GCNGC | 3 cut(s) | 106, 750, 900 |
| Sau3AI | GATC | 5 cut(s) | 10, 85, 154, 679, 718 |
| SchI | GAGTC | 2 cut(s) | 194, 754 |
| ScrFI | CCNGG | 1 cut(s) | 329 |
| SexAI | ACCWGGT | 1 cut(s) | 327 |
| SfaNI | GCATC | 2 cut(s) | 640, 756 |
| SfcI | CTRYAG | 2 cut(s) | 106, 237 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 581 |
| SmlI | CTYRAG | 1 cut(s) | 347 |
| SmoI | CTYRAG | 1 cut(s) | 347 |
| Sse9I | AATT | 4 cut(s) | 29, 49, 539, 774 |
| StyD4I | CCNGG | 1 cut(s) | 327 |
| StyI | CCWWGG | 1 cut(s) | 132 |
| TaaI | ACNGT | 3 cut(s) | 225, 607, 932 |
| TaiI | ACGT | 2 cut(s) | 180, 274 |
| TaqI | TCGA | 2 cut(s) | 819, 861 |
| TasI | AATT | 4 cut(s) | 29, 49, 539, 774 |
| TfiI | GAWTC | 3 cut(s) | 191, 443, 668 |
| Tru1I | TTAA | 3 cut(s) | 45, 431, 690 |
| Tru9I | TTAA | 3 cut(s) | 45, 431, 690 |
| TscAI | CASTG | 1 cut(s) | 293 |
| TseFI | GTSAC | 2 cut(s) | 615, 724 |
| TseI | GCWGC | 3 cut(s) | 105, 749, 899 |
| Tsp45I | GTSAC | 2 cut(s) | 615, 724 |
| TspDTI | ATGAA | 3 cut(s) | 461, 593, 786 |
| TspGWI | ACGGA | 1 cut(s) | 533 |
| TspRI | CASTG | 1 cut(s) | 293 |
| XapI | RAATTY | 3 cut(s) | 29, 49, 539 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 640 |
| XmnI | GAANNNNTTC | 1 cut(s) | 29 |
| Zsp2I | ATGCAT | 2 cut(s) | 655, 771 |