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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 527 |
| AclWI | GGATC | 2 cut(s) | 81, 704 |
| AcsI | RAATTY | 1 cut(s) | 740 |
| AfaI | GTAC | 2 cut(s) | 138, 293 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 166, 527 |
| AflIII | ACRYGT | 1 cut(s) | 203 |
| AgsI | TTSAA | 7 cut(s) | 19, 122, 131, 339, 677, 688, 746 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 569, 601 |
| AluBI | AGCT | 5 cut(s) | 74, 328, 372, 485, 605 |
| AluI | AGCT | 5 cut(s) | 74, 328, 372, 485, 605 |
| Alw21I | GWGCWC | 1 cut(s) | 646 |
| Alw26I | GTCTC | 1 cut(s) | 437 |
| AlwI | GGATC | 2 cut(s) | 81, 704 |
| ApeKI | GCWGC | 2 cut(s) | 783, 786 |
| ApoI | RAATTY | 1 cut(s) | 740 |
| AsuHPI | GGTGA | 2 cut(s) | 343, 542 |
| AsuNHI | GCTAGC | 1 cut(s) | 178 |
| Bbv12I | GWGCWC | 1 cut(s) | 646 |
| BbvCI | CCTCAGC | 1 cut(s) | 665 |
| BbvI | GCAGC | 2 cut(s) | 795, 798 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 782 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BcoDI | GTCTC | 1 cut(s) | 437 |
| BfaI | CTAG | 1 cut(s) | 179 |
| BisI | GCNGC | 2 cut(s) | 784, 787 |
| BlsI | GCNGC | 2 cut(s) | 785, 788 |
| BmsI | GCATC | 2 cut(s) | 152, 209 |
| BmtI | GCTAGC | 1 cut(s) | 182 |
| BpmI | CTGGAG | 1 cut(s) | 575 |
| Bpu10I | CCTNAGC | 1 cut(s) | 665 |
| Bsa29I | ATCGAT | 1 cut(s) | 802 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 166, 527 |
| Bse1I | ACTGG | 1 cut(s) | 558 |
| Bse3DI | GCAATG | 1 cut(s) | 571 |
| BseCI | ATCGAT | 1 cut(s) | 802 |
| BseGI | GGATG | 6 cut(s) | 224, 454, 466, 508, 739, 763 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 166, 527 |
| BseMI | GCAATG | 1 cut(s) | 571 |
| BseMII | CTCAG | 1 cut(s) | 656 |
| BseNI | ACTGG | 1 cut(s) | 558 |
| BseRI | GAGGAG | 4 cut(s) | 455, 491, 641, 682 |
| BseXI | GCAGC | 2 cut(s) | 795, 798 |
| BsgI | GTGCAG | 1 cut(s) | 802 |
| Bsh1285I | CGRYCG | 1 cut(s) | 31 |
| BshVI | ATCGAT | 1 cut(s) | 802 |
| BsiEI | CGRYCG | 1 cut(s) | 31 |
| BsiHKAI | GWGCWC | 1 cut(s) | 646 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 166, 527 |
| BsmAI | GTCTC | 1 cut(s) | 437 |
| BsmBI | CGTCTC | 1 cut(s) | 437 |
| Bsp1286I | GDGCHC | 1 cut(s) | 646 |
| Bsp143I | GATC | 4 cut(s) | 3, 28, 86, 696 |
| BspCNI | CTCAG | 1 cut(s) | 657 |
| BspDI | ATCGAT | 1 cut(s) | 802 |
| BspOI | GCTAGC | 1 cut(s) | 182 |
| BspPI | GGATC | 2 cut(s) | 81, 704 |
| BspQI | GCTCTTC | 1 cut(s) | 81 |
| BsrDI | GCAATG | 1 cut(s) | 571 |
| BsrI | ACTGG | 1 cut(s) | 558 |
| BssMI | GATC | 4 cut(s) | 3, 28, 86, 696 |
| Bst4CI | ACNGT | 1 cut(s) | 395 |
| Bst6I | CTCTTC | 5 cut(s) | 81, 282, 396, 450, 686 |
| BstC8I | GCNNGC | 4 cut(s) | 180, 514, 704, 791 |
| BstDEI | CTNAG | 1 cut(s) | 665 |
| BstF5I | GGATG | 6 cut(s) | 224, 454, 466, 508, 739, 763 |
| BstKTI | GATC | 4 cut(s) | 6, 31, 89, 699 |
| BstMAI | GTCTC | 1 cut(s) | 437 |
| BstMBI | GATC | 4 cut(s) | 3, 28, 86, 696 |
| BstMCI | CGRYCG | 1 cut(s) | 31 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 325 |
| BstNSI | RCATGY | 4 cut(s) | 207, 298, 335, 793 |
| BstV1I | GCAGC | 2 cut(s) | 795, 798 |
| Bsu15I | ATCGAT | 1 cut(s) | 802 |
| BsuTUI | ATCGAT | 1 cut(s) | 802 |
| BtgZI | GCGATG | 1 cut(s) | 438 |
| BtsCI | GGATG | 6 cut(s) | 224, 454, 466, 508, 739, 763 |
| BtsIMutI | CAGTG | 1 cut(s) | 400 |
| Cac8I | GCNNGC | 4 cut(s) | 180, 514, 704, 791 |
| ClaI | ATCGAT | 1 cut(s) | 802 |
| Csp6I | GTAC | 2 cut(s) | 137, 292 |
| CviAII | CATG | 5 cut(s) | 204, 295, 332, 574, 790 |
| CviJI | RGCY | 9 cut(s) | 74, 178, 319, 328, 372, 485, 594, 605, 664 |
| CviKI_1 | RGCY | 9 cut(s) | 74, 178, 319, 328, 372, 485, 594, 605, 664 |
| CviQI | GTAC | 2 cut(s) | 137, 292 |
| DdeI | CTNAG | 1 cut(s) | 665 |
| DpnI | GATC | 4 cut(s) | 5, 30, 88, 698 |
| DpnII | GATC | 4 cut(s) | 3, 28, 86, 696 |
| DraI | TTTAAA | 1 cut(s) | 609 |
| Eam1104I | CTCTTC | 5 cut(s) | 81, 282, 396, 450, 686 |
| EarI | CTCTTC | 5 cut(s) | 81, 282, 396, 450, 686 |
| Esp3I | CGTCTC | 1 cut(s) | 437 |
| FaeI | CATG | 5 cut(s) | 207, 298, 335, 577, 793 |
| FaiI | YATR | 9 cut(s) | 53, 96, 205, 296, 333, 467, 575, 753, 791 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 63, 95 |
| FatI | CATG | 5 cut(s) | 203, 294, 331, 573, 789 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| Fnu4HI | GCNGC | 2 cut(s) | 784, 787 |
| FokI | GGATG | 6 cut(s) | 231, 461, 473, 515, 746, 770 |
| Fsp4HI | GCNGC | 2 cut(s) | 784, 787 |
| FspBI | CTAG | 1 cut(s) | 179 |
| GluI | GCNGC | 2 cut(s) | 784, 787 |
| GsuI | CTGGAG | 1 cut(s) | 575 |
| Hin1II | CATG | 5 cut(s) | 207, 298, 335, 577, 793 |
| HindIII | AAGCTT | 1 cut(s) | 603 |
| HinfI | GANTC | 2 cut(s) | 673, 799 |
| HphI | GGTGA | 2 cut(s) | 343, 542 |
| Hpy188I | TCNGA | 1 cut(s) | 324 |
| Hpy188III | TCNNGA | 1 cut(s) | 216 |
| HpyAV | CCTTC | 2 cut(s) | 488, 571 |
| HpyCH4III | ACNGT | 1 cut(s) | 395 |
| HpyCH4V | TGCA | 7 cut(s) | 62, 101, 165, 209, 308, 783, 793 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 325 |
| HpyF3I | CTNAG | 1 cut(s) | 665 |
| Hsp92II | CATG | 5 cut(s) | 207, 298, 335, 577, 793 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 4 cut(s) | 3, 28, 86, 696 |
| LguI | GCTCTTC | 1 cut(s) | 81 |
| LpnPI | CCDG | 1 cut(s) | 539 |
| Lsp1109I | GCAGC | 2 cut(s) | 795, 798 |
| LweI | GCATC | 2 cut(s) | 152, 209 |
| MaeI | CTAG | 1 cut(s) | 179 |
| MalI | GATC | 4 cut(s) | 5, 30, 88, 698 |
| MboI | GATC | 4 cut(s) | 3, 28, 86, 696 |
| MfeI | CAATTG | 1 cut(s) | 140 |
| MhlI | GDGCHC | 1 cut(s) | 646 |
| MluCI | AATT | 3 cut(s) | 140, 631, 740 |
| MmeI | TCCRAC | 2 cut(s) | 324, 567 |
| MseI | TTAA | 2 cut(s) | 81, 608 |
| MslI | CAYNNNNRTG | 1 cut(s) | 470 |
| MunI | CAATTG | 1 cut(s) | 140 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 325 |
| NdeII | GATC | 4 cut(s) | 3, 28, 86, 696 |
| NheI | GCTAGC | 1 cut(s) | 178 |
| NlaIII | CATG | 5 cut(s) | 207, 298, 335, 577, 793 |
| NspI | RCATGY | 4 cut(s) | 207, 298, 335, 793 |
| PaeI | GCATGC | 1 cut(s) | 793 |
| PciI | ACATGT | 1 cut(s) | 203 |
| PciSI | GCTCTTC | 1 cut(s) | 81 |
| PfeI | GAWTC | 2 cut(s) | 673, 799 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 527 |
| PkrI | GCNGC | 2 cut(s) | 785, 788 |
| Ple19I | CGATCG | 1 cut(s) | 31 |
| PscI | ACATGT | 1 cut(s) | 203 |
| PvuI | CGATCG | 1 cut(s) | 31 |
| RsaI | GTAC | 2 cut(s) | 138, 293 |
| RsaNI | GTAC | 2 cut(s) | 137, 292 |
| RseI | CAYNNNNRTG | 1 cut(s) | 470 |
| SapI | GCTCTTC | 1 cut(s) | 81 |
| SaqAI | TTAA | 2 cut(s) | 81, 608 |
| SatI | GCNGC | 2 cut(s) | 784, 787 |
| Sau3AI | GATC | 4 cut(s) | 3, 28, 86, 696 |
| SduI | GDGCHC | 1 cut(s) | 646 |
| SetI | ASST | 7 cut(s) | 76, 189, 330, 374, 487, 607, 782 |
| SfaNI | GCATC | 2 cut(s) | 152, 209 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 470 |
| SphI | GCATGC | 1 cut(s) | 793 |
| Sse9I | AATT | 3 cut(s) | 140, 631, 740 |
| SspMI | CTAG | 1 cut(s) | 179 |
| TaaI | ACNGT | 1 cut(s) | 395 |
| TaqI | TCGA | 2 cut(s) | 709, 802 |
| TasI | AATT | 3 cut(s) | 140, 631, 740 |
| TatI | WGTACW | 2 cut(s) | 136, 291 |
| TfiI | GAWTC | 2 cut(s) | 673, 799 |
| Tru1I | TTAA | 2 cut(s) | 81, 608 |
| Tru9I | TTAA | 2 cut(s) | 81, 608 |
| TscAI | CASTG | 1 cut(s) | 400 |
| TseI | GCWGC | 2 cut(s) | 783, 786 |
| TspDTI | ATGAA | 9 cut(s) | 423, 441, 465, 519, 557, 582, 590, 635, 774 |
| TspGWI | ACGGA | 2 cut(s) | 182, 461 |
| TspRI | CASTG | 1 cut(s) | 400 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 527 |
| XapI | RAATTY | 1 cut(s) | 740 |
| XceI | RCATGY | 4 cut(s) | 207, 298, 335, 793 |
| XspI | CTAG | 1 cut(s) | 179 |