gag-polypeptide of LTR copia-type
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 140 |
| AcsI | RAATTY | 1 cut(s) | 112 |
| AfaI | GTAC | 1 cut(s) | 198 |
| AflIII | ACRYGT | 1 cut(s) | 154 |
| AgsI | TTSAA | 5 cut(s) | 29, 79, 92, 176, 268 |
| AluBI | AGCT | 2 cut(s) | 46, 277 |
| AluI | AGCT | 2 cut(s) | 46, 277 |
| Alw26I | GTCTC | 3 cut(s) | 178, 231, 242 |
| ApeKI | GCWGC | 1 cut(s) | 206 |
| ApoI | RAATTY | 1 cut(s) | 112 |
| BbsI | GAAGAC | 1 cut(s) | 46 |
| BbvCI | CCTCAGC | 1 cut(s) | 210 |
| BbvI | GCAGC | 1 cut(s) | 193 |
| BcoDI | GTCTC | 3 cut(s) | 178, 231, 242 |
| BglII | AGATCT | 1 cut(s) | 22 |
| BisI | GCNGC | 1 cut(s) | 207 |
| BlsI | GCNGC | 1 cut(s) | 208 |
| BpiI | GAAGAC | 1 cut(s) | 46 |
| Bpu10I | CCTNAGC | 1 cut(s) | 210 |
| BseGI | GGATG | 1 cut(s) | 166 |
| BseMII | CTCAG | 1 cut(s) | 201 |
| BseXI | GCAGC | 1 cut(s) | 193 |
| BseYI | CCCAGC | 1 cut(s) | 277 |
| BsmAI | GTCTC | 3 cut(s) | 178, 231, 242 |
| BsmBI | CGTCTC | 1 cut(s) | 242 |
| Bsp143I | GATC | 1 cut(s) | 22 |
| BspCNI | CTCAG | 1 cut(s) | 202 |
| BspQI | GCTCTTC | 1 cut(s) | 36 |
| BssMI | GATC | 1 cut(s) | 22 |
| Bst4CI | ACNGT | 2 cut(s) | 196, 272 |
| Bst6I | CTCTTC | 2 cut(s) | 36, 229 |
| BstC8I | GCNNGC | 1 cut(s) | 297 |
| BstDEI | CTNAG | 2 cut(s) | 6, 210 |
| BstF5I | GGATG | 1 cut(s) | 166 |
| BstKTI | GATC | 1 cut(s) | 25 |
| BstMAI | GTCTC | 3 cut(s) | 178, 231, 242 |
| BstMBI | GATC | 1 cut(s) | 22 |
| BstNSI | RCATGY | 2 cut(s) | 158, 303 |
| BstV1I | GCAGC | 1 cut(s) | 193 |
| BstV2I | GAAGAC | 1 cut(s) | 46 |
| BstX2I | RGATCY | 1 cut(s) | 22 |
| BstYI | RGATCY | 1 cut(s) | 22 |
| BtsCI | GGATG | 1 cut(s) | 166 |
| Cac8I | GCNNGC | 1 cut(s) | 297 |
| Csp6I | GTAC | 1 cut(s) | 197 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 17, 52 |
| CviAII | CATG | 2 cut(s) | 155, 300 |
| CviJI | RGCY | 4 cut(s) | 46, 71, 83, 277 |
| CviKI_1 | RGCY | 4 cut(s) | 46, 71, 83, 277 |
| CviQI | GTAC | 1 cut(s) | 197 |
| DdeI | CTNAG | 2 cut(s) | 6, 210 |
| DpnI | GATC | 1 cut(s) | 24 |
| DpnII | GATC | 1 cut(s) | 22 |
| DraI | TTTAAA | 1 cut(s) | 340 |
| Eam1104I | CTCTTC | 2 cut(s) | 36, 229 |
| EarI | CTCTTC | 2 cut(s) | 36, 229 |
| Esp3I | CGTCTC | 1 cut(s) | 242 |
| FaeI | CATG | 2 cut(s) | 158, 303 |
| FaiI | YATR | 6 cut(s) | 87, 140, 156, 285, 301, 349 |
| FatI | CATG | 2 cut(s) | 154, 299 |
| Fnu4HI | GCNGC | 1 cut(s) | 207 |
| FokI | GGATG | 1 cut(s) | 173 |
| Fsp4HI | GCNGC | 1 cut(s) | 207 |
| GluI | GCNGC | 1 cut(s) | 207 |
| GsaI | CCCAGC | 1 cut(s) | 281 |
| Hin1II | CATG | 2 cut(s) | 158, 303 |
| Hpy188I | TCNGA | 1 cut(s) | 59 |
| Hpy188III | TCNNGA | 1 cut(s) | 129 |
| HpyAV | CCTTC | 1 cut(s) | 73 |
| HpyCH4III | ACNGT | 2 cut(s) | 196, 272 |
| HpyCH4V | TGCA | 2 cut(s) | 20, 324 |
| HpyF3I | CTNAG | 2 cut(s) | 6, 210 |
| Hsp92II | CATG | 2 cut(s) | 158, 303 |
| Kzo9I | GATC | 1 cut(s) | 22 |
| LguI | GCTCTTC | 1 cut(s) | 36 |
| LpnPI | CCDG | 4 cut(s) | 91, 114, 263, 281 |
| Lsp1109I | GCAGC | 1 cut(s) | 193 |
| MalI | GATC | 1 cut(s) | 24 |
| MboI | GATC | 1 cut(s) | 22 |
| MboII | GAAGA | 6 cut(s) | 17, 46, 53, 121, 246, 300 |
| MflI | RGATCY | 1 cut(s) | 22 |
| MluCI | AATT | 3 cut(s) | 112, 176, 201 |
| MmeI | TCCRAC | 1 cut(s) | 147 |
| MnlI | CCTC | 4 cut(s) | 141, 163, 183, 205 |
| MseI | TTAA | 3 cut(s) | 179, 315, 339 |
| MslI | CAYNNNNRTG | 1 cut(s) | 159 |
| NdeII | GATC | 1 cut(s) | 22 |
| NlaIII | CATG | 2 cut(s) | 158, 303 |
| NspI | RCATGY | 2 cut(s) | 158, 303 |
| PciI | ACATGT | 1 cut(s) | 154 |
| PciSI | GCTCTTC | 1 cut(s) | 36 |
| PkrI | GCNGC | 1 cut(s) | 208 |
| PscI | ACATGT | 1 cut(s) | 154 |
| PsiI | TTATAA | 1 cut(s) | 140 |
| PspFI | CCCAGC | 1 cut(s) | 277 |
| PsuI | RGATCY | 1 cut(s) | 22 |
| RsaI | GTAC | 1 cut(s) | 198 |
| RsaNI | GTAC | 1 cut(s) | 197 |
| RseI | CAYNNNNRTG | 1 cut(s) | 159 |
| SapI | GCTCTTC | 1 cut(s) | 36 |
| SaqAI | TTAA | 3 cut(s) | 179, 315, 339 |
| SatI | GCNGC | 1 cut(s) | 207 |
| Sau3AI | GATC | 1 cut(s) | 22 |
| SetI | ASST | 4 cut(s) | 48, 174, 216, 279 |
| SmiI | ATTTAAAT | 1 cut(s) | 340 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 159 |
| Sse9I | AATT | 3 cut(s) | 112, 176, 201 |
| SwaI | ATTTAAAT | 1 cut(s) | 340 |
| TaaI | ACNGT | 2 cut(s) | 196, 272 |
| TaqI | TCGA | 1 cut(s) | 120 |
| TasI | AATT | 3 cut(s) | 112, 176, 201 |
| TatI | WGTACW | 1 cut(s) | 196 |
| Tru1I | TTAA | 3 cut(s) | 179, 315, 339 |
| Tru9I | TTAA | 3 cut(s) | 179, 315, 339 |
| TseI | GCWGC | 1 cut(s) | 206 |
| TspGWI | ACGGA | 1 cut(s) | 266 |
| XapI | RAATTY | 1 cut(s) | 112 |
| XceI | RCATGY | 2 cut(s) | 158, 303 |