gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 887 |
| AccB1I | GGYRCC | 1 cut(s) | 144 |
| AccI | GTMKAC | 1 cut(s) | 5 |
| AciI | CCGC | 2 cut(s) | 121, 148 |
| AclWI | GGATC | 3 cut(s) | 118, 131, 469 |
| AcsI | RAATTY | 5 cut(s) | 281, 505, 600, 995, 1132 |
| AcuI | CTGAAG | 4 cut(s) | 30, 393, 513, 922 |
| AcyI | GRCGYC | 1 cut(s) | 884 |
| AdeI | CACNNNGTG | 2 cut(s) | 500, 557 |
| AfaI | GTAC | 1 cut(s) | 370 |
| AflII | CTTAAG | 1 cut(s) | 806 |
| AflIII | ACRYGT | 1 cut(s) | 395 |
| AgsI | TTSAA | 7 cut(s) | 178, 287, 304, 407, 709, 911, 1088 |
| AluBI | AGCT | 8 cut(s) | 358, 565, 689, 697, 734, 833, 928, 1081 |
| AluI | AGCT | 8 cut(s) | 358, 565, 689, 697, 734, 833, 928, 1081 |
| Alw21I | GWGCWC | 3 cut(s) | 226, 485, 699 |
| Alw26I | GTCTC | 1 cut(s) | 147 |
| AlwI | GGATC | 3 cut(s) | 118, 131, 469 |
| AoxI | GGCC | 1 cut(s) | 634 |
| ApeKI | GCWGC | 1 cut(s) | 565 |
| ApoI | RAATTY | 5 cut(s) | 281, 505, 600, 995, 1132 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 787, 819 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 299 |
| AspS9I | GGNCC | 2 cut(s) | 635, 1074 |
| AsuHPI | GGTGA | 2 cut(s) | 325, 1141 |
| AvaII | GGWCC | 1 cut(s) | 1074 |
| BamHI | GGATCC | 1 cut(s) | 123 |
| BanI | GGYRCC | 1 cut(s) | 144 |
| BanII | GRGCYC | 1 cut(s) | 699 |
| BauI | CACGAG | 1 cut(s) | 639 |
| BbsI | GAAGAC | 1 cut(s) | 1072 |
| Bbv12I | GWGCWC | 3 cut(s) | 226, 485, 699 |
| BbvI | GCAGC | 1 cut(s) | 552 |
| BccI | CCATC | 1 cut(s) | 211 |
| BceAI | ACGGC | 1 cut(s) | 172 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 174, 208 |
| BciVI | GTATCC | 1 cut(s) | 144 |
| BcoDI | GTCTC | 1 cut(s) | 147 |
| BfaI | CTAG | 4 cut(s) | 278, 690, 749, 1082 |
| BfrI | CTTAAG | 1 cut(s) | 806 |
| BfuI | GTATCC | 1 cut(s) | 144 |
| BglII | AGATCT | 2 cut(s) | 933, 1099 |
| BisI | GCNGC | 2 cut(s) | 148, 566 |
| BlsI | GCNGC | 2 cut(s) | 149, 567 |
| Bme18I | GGWCC | 1 cut(s) | 1074 |
| BmgT120I | GGNCC | 2 cut(s) | 635, 1074 |
| BmiI | GGNNCC | 2 cut(s) | 125, 146 |
| BmsI | GCATC | 3 cut(s) | 178, 778, 1033 |
| BpiI | GAAGAC | 1 cut(s) | 1072 |
| BpmI | CTGGAG | 1 cut(s) | 669 |
| BpuEI | CTTGAG | 1 cut(s) | 950 |
| Bsa29I | ATCGAT | 2 cut(s) | 438, 702 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1104 |
| BsaHI | GRCGYC | 1 cut(s) | 884 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 205, 235 |
| Bse1I | ACTGG | 1 cut(s) | 637 |
| Bse3DI | GCAATG | 1 cut(s) | 197 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1104 |
| BseCI | ATCGAT | 2 cut(s) | 438, 702 |
| BseGI | GGATG | 3 cut(s) | 451, 769, 1048 |
| BseJI | GATNNNNATC | 1 cut(s) | 1104 |
| BseMI | GCAATG | 1 cut(s) | 197 |
| BseMII | CTCAG | 1 cut(s) | 879 |
| BseNI | ACTGG | 1 cut(s) | 637 |
| BseRI | GAGGAG | 2 cut(s) | 767, 814 |
| BseXI | GCAGC | 1 cut(s) | 552 |
| BshFI | GGCC | 1 cut(s) | 636 |
| BshNI | GGYRCC | 1 cut(s) | 144 |
| BshVI | ATCGAT | 2 cut(s) | 438, 702 |
| BsiHKAI | GWGCWC | 3 cut(s) | 226, 485, 699 |
| BslFI | GGGAC | 1 cut(s) | 49 |
| BsmAI | GTCTC | 1 cut(s) | 147 |
| BsmBI | CGTCTC | 1 cut(s) | 147 |
| BsmFI | GGGAC | 1 cut(s) | 49 |
| BsmI | GAATGC | 1 cut(s) | 824 |
| BsnI | GGCC | 1 cut(s) | 636 |
| Bsp1286I | GDGCHC | 3 cut(s) | 226, 485, 699 |
| Bsp143I | GATC | 7 cut(s) | 123, 461, 780, 933, 1053, 1099, 1105 |
| BspACI | CCGC | 2 cut(s) | 121, 148 |
| BspANI | GGCC | 1 cut(s) | 636 |
| BspCNI | CTCAG | 1 cut(s) | 880 |
| BspDI | ATCGAT | 2 cut(s) | 438, 702 |
| BspLI | GGNNCC | 2 cut(s) | 125, 146 |
| BspPI | GGATC | 3 cut(s) | 118, 131, 469 |
| BspQI | GCTCTTC | 1 cut(s) | 918 |
| BspT107I | GGYRCC | 1 cut(s) | 144 |
| BspTI | CTTAAG | 1 cut(s) | 806 |
| BsrDI | GCAATG | 1 cut(s) | 197 |
| BsrI | ACTGG | 1 cut(s) | 637 |
| BssMI | GATC | 7 cut(s) | 123, 461, 780, 933, 1053, 1099, 1105 |
| BssNAI | GTATAC | 1 cut(s) | 6 |
| BssNI | GRCGYC | 1 cut(s) | 884 |
| BssSI | CACGAG | 1 cut(s) | 639 |
| Bst1107I | GTATAC | 1 cut(s) | 6 |
| Bst2BI | CACGAG | 1 cut(s) | 639 |
| Bst4CI | ACNGT | 2 cut(s) | 241, 368 |
| Bst6I | CTCTTC | 4 cut(s) | 303, 532, 835, 918 |
| BstACI | GRCGYC | 1 cut(s) | 884 |
| BstAFI | CTTAAG | 1 cut(s) | 806 |
| BstC8I | GCNNGC | 1 cut(s) | 80 |
| BstDEI | CTNAG | 2 cut(s) | 497, 888 |
| BstF5I | GGATG | 3 cut(s) | 451, 769, 1048 |
| BstKTI | GATC | 7 cut(s) | 126, 464, 783, 936, 1056, 1102, 1108 |
| BstMAI | GTCTC | 1 cut(s) | 147 |
| BstMBI | GATC | 7 cut(s) | 123, 461, 780, 933, 1053, 1099, 1105 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 79, 156, 830 |
| BstNSI | RCATGY | 1 cut(s) | 399 |
| BstV1I | GCAGC | 1 cut(s) | 552 |
| BstV2I | GAAGAC | 1 cut(s) | 1072 |
| BstX2I | RGATCY | 3 cut(s) | 123, 933, 1099 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 210 |
| BstYI | RGATCY | 3 cut(s) | 123, 933, 1099 |
| BstZ17I | GTATAC | 1 cut(s) | 6 |
| Bsu15I | ATCGAT | 2 cut(s) | 438, 702 |
| BsuI | GTATCC | 1 cut(s) | 144 |
| BsuRI | GGCC | 1 cut(s) | 636 |
| BsuTUI | ATCGAT | 2 cut(s) | 438, 702 |
| BtsCI | GGATG | 3 cut(s) | 451, 769, 1048 |
| BtsIMutI | CAGTG | 2 cut(s) | 237, 813 |
| Cac8I | GCNNGC | 1 cut(s) | 80 |
| Cfr13I | GGNCC | 2 cut(s) | 635, 1074 |
| ClaI | ATCGAT | 2 cut(s) | 438, 702 |
| Csp6I | GTAC | 1 cut(s) | 369 |
| CviAII | CATG | 4 cut(s) | 45, 130, 362, 396 |
| CviQI | GTAC | 1 cut(s) | 369 |
| DdeI | CTNAG | 2 cut(s) | 497, 888 |
| DpnI | GATC | 7 cut(s) | 125, 463, 782, 935, 1055, 1101, 1107 |
| DpnII | GATC | 7 cut(s) | 123, 461, 780, 933, 1053, 1099, 1105 |
| DraI | TTTAAA | 3 cut(s) | 115, 858, 1137 |
| DraIII | CACNNNGTG | 2 cut(s) | 500, 557 |
| Eam1104I | CTCTTC | 4 cut(s) | 303, 532, 835, 918 |
| EarI | CTCTTC | 4 cut(s) | 303, 532, 835, 918 |
| EciI | GGCGGA | 1 cut(s) | 136 |
| Ecl136II | GAGCTC | 1 cut(s) | 697 |
| Eco24I | GRGCYC | 1 cut(s) | 699 |
| Eco47I | GGWCC | 1 cut(s) | 1074 |
| Eco53kI | GAGCTC | 1 cut(s) | 697 |
| Eco57I | CTGAAG | 4 cut(s) | 30, 393, 513, 922 |
| EcoICRI | GAGCTC | 1 cut(s) | 697 |
| EcoT38I | GRGCYC | 1 cut(s) | 699 |
| Esp3I | CGTCTC | 1 cut(s) | 147 |
| FaeI | CATG | 4 cut(s) | 48, 133, 365, 399 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 366, 398 |
| FaqI | GGGAC | 1 cut(s) | 49 |
| FatI | CATG | 4 cut(s) | 44, 129, 361, 395 |
| FauNDI | CATATG | 1 cut(s) | 967 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| Fnu4HI | GCNGC | 2 cut(s) | 148, 566 |
| FokI | GGATG | 3 cut(s) | 458, 756, 1055 |
| FriOI | GRGCYC | 1 cut(s) | 699 |
| Fsp4HI | GCNGC | 2 cut(s) | 148, 566 |
| FspBI | CTAG | 4 cut(s) | 278, 690, 749, 1082 |
| GluI | GCNGC | 2 cut(s) | 148, 566 |
| GsuI | CTGGAG | 1 cut(s) | 669 |
| HaeIII | GGCC | 1 cut(s) | 636 |
| Hin1I | GRCGYC | 1 cut(s) | 884 |
| Hin1II | CATG | 4 cut(s) | 48, 133, 365, 399 |
| HindIII | AAGCTT | 1 cut(s) | 732 |
| HinfI | GANTC | 5 cut(s) | 51, 524, 802, 843, 893 |
| HphI | GGTGA | 2 cut(s) | 325, 1141 |
| Hpy166II | GTNNAC | 4 cut(s) | 6, 237, 560, 813 |
| Hpy188I | TCNGA | 3 cut(s) | 91, 889, 941 |
| Hpy188III | TCNNGA | 3 cut(s) | 64, 521, 1103 |
| Hpy8I | GTNNAC | 4 cut(s) | 6, 237, 560, 813 |
| HpyAV | CCTTC | 5 cut(s) | 368, 452, 783, 917, 1065 |
| HpyCH4III | ACNGT | 2 cut(s) | 241, 368 |
| HpyCH4IV | ACGT | 3 cut(s) | 93, 233, 884 |
| HpyCH4V | TGCA | 7 cut(s) | 73, 185, 503, 514, 606, 824, 850 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 79, 156, 830 |
| HpyF3I | CTNAG | 2 cut(s) | 497, 888 |
| HpySE526I | ACGT | 3 cut(s) | 93, 233, 884 |
| Hsp92I | GRCGYC | 1 cut(s) | 884 |
| Hsp92II | CATG | 4 cut(s) | 48, 133, 365, 399 |
| Kzo9I | GATC | 7 cut(s) | 123, 461, 780, 933, 1053, 1099, 1105 |
| LguI | GCTCTTC | 1 cut(s) | 918 |
| LmnI | GCTCC | 1 cut(s) | 363 |
| Lsp1109I | GCAGC | 1 cut(s) | 552 |
| LweI | GCATC | 3 cut(s) | 178, 778, 1033 |
| MaeI | CTAG | 4 cut(s) | 278, 690, 749, 1082 |
| MaeII | ACGT | 3 cut(s) | 93, 233, 884 |
| MaeIII | GTNAC | 6 cut(s) | 313, 326, 337, 608, 651, 1121 |
| MalI | GATC | 7 cut(s) | 125, 463, 782, 935, 1055, 1101, 1107 |
| MboI | GATC | 7 cut(s) | 123, 461, 780, 933, 1053, 1099, 1105 |
| MflI | RGATCY | 3 cut(s) | 123, 933, 1099 |
| MhlI | GDGCHC | 3 cut(s) | 226, 485, 699 |
| MluCI | AATT | 8 cut(s) | 227, 281, 505, 541, 600, 995, 1058, 1132 |
| MlyI | GAGTC | 5 cut(s) | 60, 518, 811, 852, 887 |
| MmeI | TCCRAC | 1 cut(s) | 701 |
| MroXI | GAANNNNTTC | 1 cut(s) | 299 |
| MseI | TTAA | 8 cut(s) | 114, 246, 255, 477, 807, 857, 1061, 1136 |
| MslI | CAYNNNNRTG | 2 cut(s) | 43, 208 |
| MspA1I | CMGCKG | 1 cut(s) | 565 |
| MspCI | CTTAAG | 1 cut(s) | 806 |
| Mva1269I | GAATGC | 1 cut(s) | 824 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 79, 156, 830 |
| NdeI | CATATG | 1 cut(s) | 967 |
| NdeII | GATC | 7 cut(s) | 123, 461, 780, 933, 1053, 1099, 1105 |
| NlaIII | CATG | 4 cut(s) | 48, 133, 365, 399 |
| NlaIV | GGNNCC | 2 cut(s) | 125, 146 |
| NmuCI | GTSAC | 2 cut(s) | 313, 1121 |
| NspI | RCATGY | 1 cut(s) | 399 |
| PciI | ACATGT | 1 cut(s) | 395 |
| PciSI | GCTCTTC | 1 cut(s) | 918 |
| PctI | GAATGC | 1 cut(s) | 824 |
| PdmI | GAANNNNTTC | 1 cut(s) | 299 |
| PkrI | GCNGC | 2 cut(s) | 149, 567 |
| PleI | GAGTC | 5 cut(s) | 59, 518, 810, 851, 887 |
| PpsI | GAGTC | 5 cut(s) | 59, 518, 810, 851, 887 |
| PscI | ACATGT | 1 cut(s) | 395 |
| Psp124BI | GAGCTC | 1 cut(s) | 699 |
| PspN4I | GGNNCC | 2 cut(s) | 125, 146 |
| PspPI | GGNCC | 2 cut(s) | 635, 1074 |
| PsuI | RGATCY | 3 cut(s) | 123, 933, 1099 |
| PvuII | CAGCTG | 1 cut(s) | 565 |
| RsaI | GTAC | 1 cut(s) | 370 |
| RsaNI | GTAC | 1 cut(s) | 369 |
| RseI | CAYNNNNRTG | 2 cut(s) | 43, 208 |
| SacI | GAGCTC | 1 cut(s) | 699 |
| SapI | GCTCTTC | 1 cut(s) | 918 |
| SaqAI | TTAA | 8 cut(s) | 114, 246, 255, 477, 807, 857, 1061, 1136 |
| SatI | GCNGC | 2 cut(s) | 148, 566 |
| Sau3AI | GATC | 7 cut(s) | 123, 461, 780, 933, 1053, 1099, 1105 |
| Sau96I | GGNCC | 2 cut(s) | 635, 1074 |
| SchI | GAGTC | 5 cut(s) | 60, 518, 811, 852, 887 |
| SduI | GDGCHC | 3 cut(s) | 226, 485, 699 |
| SfaNI | GCATC | 3 cut(s) | 178, 778, 1033 |
| SinI | GGWCC | 1 cut(s) | 1074 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 43, 208 |
| SmlI | CTYRAG | 2 cut(s) | 806, 929 |
| SmoI | CTYRAG | 2 cut(s) | 806, 929 |
| Sse9I | AATT | 8 cut(s) | 227, 281, 505, 541, 600, 995, 1058, 1132 |
| SsiI | CCGC | 2 cut(s) | 121, 148 |
| SspMI | CTAG | 4 cut(s) | 278, 690, 749, 1082 |
| SstI | GAGCTC | 1 cut(s) | 699 |
| TaaI | ACNGT | 2 cut(s) | 241, 368 |
| TaiI | ACGT | 3 cut(s) | 96, 236, 887 |
| TaqI | TCGA | 6 cut(s) | 54, 65, 194, 438, 702, 783 |
| TaqII | GACCGA | 1 cut(s) | 1091 |
| TasI | AATT | 8 cut(s) | 227, 281, 505, 541, 600, 995, 1058, 1132 |
| TatI | WGTACW | 1 cut(s) | 368 |
| TauI | GCSGC | 1 cut(s) | 150 |
| Tru1I | TTAA | 8 cut(s) | 114, 246, 255, 477, 807, 857, 1061, 1136 |
| Tru9I | TTAA | 8 cut(s) | 114, 246, 255, 477, 807, 857, 1061, 1136 |
| TscAI | CASTG | 2 cut(s) | 244, 820 |
| TseFI | GTSAC | 2 cut(s) | 313, 1121 |
| TseI | GCWGC | 1 cut(s) | 565 |
| Tsp45I | GTSAC | 2 cut(s) | 313, 1121 |
| TspDTI | ATGAA | 4 cut(s) | 88, 462, 765, 1004 |
| TspRI | CASTG | 2 cut(s) | 244, 820 |
| Vha464I | CTTAAG | 1 cut(s) | 806 |
| VpaK11BI | GGWCC | 1 cut(s) | 1074 |
| XapI | RAATTY | 5 cut(s) | 281, 505, 600, 995, 1132 |
| XceI | RCATGY | 1 cut(s) | 399 |
| XmiI | GTMKAC | 1 cut(s) | 5 |
| XmnI | GAANNNNTTC | 1 cut(s) | 299 |
| XspI | CTAG | 4 cut(s) | 278, 690, 749, 1082 |
| ZraI | GACGTC | 1 cut(s) | 885 |