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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 21 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 548 |
| AccBSI | CCGCTC | 1 cut(s) | 1074 |
| AccI | GTMKAC | 1 cut(s) | 1052 |
| AciI | CCGC | 1 cut(s) | 1074 |
| AclWI | GGATC | 1 cut(s) | 1008 |
| AcsI | RAATTY | 2 cut(s) | 355, 988 |
| AcuI | CTGAAG | 4 cut(s) | 798, 921, 954, 1053 |
| AcyI | GRCGYC | 1 cut(s) | 18 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 548 |
| AgsI | TTSAA | 3 cut(s) | 118, 232, 993 |
| AluBI | AGCT | 9 cut(s) | 80, 121, 302, 382, 442, 614, 653, 893, 977 |
| AluI | AGCT | 9 cut(s) | 80, 121, 302, 382, 442, 614, 653, 893, 977 |
| Alw21I | GWGCWC | 1 cut(s) | 217 |
| Alw26I | GTCTC | 1 cut(s) | 741 |
| Alw44I | GTGCAC | 1 cut(s) | 213 |
| AlwI | GGATC | 1 cut(s) | 1008 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 932 |
| ApaLI | GTGCAC | 1 cut(s) | 213 |
| ApeKI | GCWGC | 3 cut(s) | 382, 893, 896 |
| ApoI | RAATTY | 2 cut(s) | 355, 988 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 155, 187 |
| AsuHPI | GGTGA | 8 cut(s) | 125, 632, 641, 680, 707, 716, 746, 895 |
| AxyI | CCTNAGG | 1 cut(s) | 239 |
| BaeGI | GKGCMC | 1 cut(s) | 217 |
| BbsI | GAAGAC | 6 cut(s) | 314, 459, 534, 765, 828, 1041 |
| Bbv12I | GWGCWC | 1 cut(s) | 217 |
| BbvCI | CCTCAGC | 1 cut(s) | 518 |
| BbvI | GCAGC | 3 cut(s) | 369, 880, 883 |
| BccI | CCATC | 8 cut(s) | 196, 310, 360, 611, 650, 659, 686, 725 |
| BciVI | GTATCC | 1 cut(s) | 45 |
| BcoDI | GTCTC | 1 cut(s) | 741 |
| BfuI | GTATCC | 1 cut(s) | 45 |
| BisI | GCNGC | 4 cut(s) | 383, 894, 897, 1075 |
| BlsI | GCNGC | 4 cut(s) | 384, 895, 898, 1076 |
| BmsI | GCATC | 4 cut(s) | 139, 169, 275, 512 |
| BpiI | GAAGAC | 6 cut(s) | 314, 459, 534, 765, 828, 1041 |
| Bpu10I | CCTNAGC | 1 cut(s) | 518 |
| BsaAI | YACGTR | 1 cut(s) | 1050 |
| BsaHI | GRCGYC | 1 cut(s) | 18 |
| BsaJI | CCNNGG | 1 cut(s) | 88 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 672, 702, 711, 741, 1034, 1064 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 548 |
| Bse21I | CCTNAGG | 1 cut(s) | 239 |
| BseDI | CCNNGG | 1 cut(s) | 88 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 548 |
| BseMII | CTCAG | 3 cut(s) | 294, 509, 854 |
| BseRI | GAGGAG | 2 cut(s) | 336, 510 |
| BseSI | GKGCMC | 1 cut(s) | 217 |
| BseXI | GCAGC | 3 cut(s) | 369, 880, 883 |
| BsgI | GTGCAG | 1 cut(s) | 368 |
| BsiHKAI | GWGCWC | 1 cut(s) | 217 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 548 |
| BsmAI | GTCTC | 1 cut(s) | 741 |
| BsmBI | CGTCTC | 1 cut(s) | 741 |
| BsmI | GAATGC | 2 cut(s) | 99, 113 |
| Bsp1286I | GDGCHC | 1 cut(s) | 217 |
| Bsp143I | GATC | 1 cut(s) | 1000 |
| BspACI | CCGC | 1 cut(s) | 1074 |
| BspCNI | CTCAG | 3 cut(s) | 295, 510, 853 |
| BspHI | TCATGA | 1 cut(s) | 279 |
| BspPI | GGATC | 1 cut(s) | 1008 |
| BsrBI | CCGCTC | 1 cut(s) | 1074 |
| BssECI | CCNNGG | 1 cut(s) | 88 |
| BssMI | GATC | 1 cut(s) | 1000 |
| BssNAI | GTATAC | 1 cut(s) | 1053 |
| BssNI | GRCGYC | 1 cut(s) | 18 |
| BssT1I | CCWWGG | 1 cut(s) | 88 |
| Bst1107I | GTATAC | 1 cut(s) | 1053 |
| Bst4CI | ACNGT | 1 cut(s) | 584 |
| Bst6I | CTCTTC | 3 cut(s) | 591, 630, 705 |
| BstACI | GRCGYC | 1 cut(s) | 18 |
| BstBAI | YACGTR | 1 cut(s) | 1050 |
| BstC8I | GCNNGC | 1 cut(s) | 975 |
| BstDEI | CTNAG | 4 cut(s) | 239, 303, 518, 840 |
| BstKTI | GATC | 1 cut(s) | 1003 |
| BstMAI | GTCTC | 1 cut(s) | 741 |
| BstMBI | GATC | 1 cut(s) | 1000 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 127 |
| BstSLI | GKGCMC | 1 cut(s) | 217 |
| BstV1I | GCAGC | 3 cut(s) | 369, 880, 883 |
| BstV2I | GAAGAC | 6 cut(s) | 314, 459, 534, 765, 828, 1041 |
| BstZ17I | GTATAC | 1 cut(s) | 1053 |
| Bsu36I | CCTNAGG | 1 cut(s) | 239 |
| BsuI | GTATCC | 1 cut(s) | 45 |
| BtgZI | GCGATG | 2 cut(s) | 215, 252 |
| BtsIMutI | CAGTG | 1 cut(s) | 589 |
| Cac8I | GCNNGC | 1 cut(s) | 975 |
| CaiI | CAGNNNCTG | 1 cut(s) | 932 |
| CciI | TCATGA | 1 cut(s) | 279 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 243, 278 |
| CviAII | CATG | 1 cut(s) | 280 |
| DdeI | CTNAG | 4 cut(s) | 239, 303, 518, 840 |
| DpnI | GATC | 1 cut(s) | 1002 |
| DpnII | GATC | 1 cut(s) | 1000 |
| Eam1104I | CTCTTC | 3 cut(s) | 591, 630, 705 |
| EarI | CTCTTC | 3 cut(s) | 591, 630, 705 |
| Eco130I | CCWWGG | 1 cut(s) | 88 |
| Eco57I | CTGAAG | 4 cut(s) | 798, 921, 954, 1053 |
| Eco81I | CCTNAGG | 1 cut(s) | 239 |
| EcoT14I | CCWWGG | 1 cut(s) | 88 |
| ErhI | CCWWGG | 1 cut(s) | 88 |
| Esp3I | CGTCTC | 1 cut(s) | 741 |
| FaeI | CATG | 1 cut(s) | 283 |
| FaiI | YATR | 6 cut(s) | 13, 281, 292, 362, 569, 1053 |
| FatI | CATG | 1 cut(s) | 279 |
| FblI | GTMKAC | 1 cut(s) | 1052 |
| Fnu4HI | GCNGC | 4 cut(s) | 383, 894, 897, 1075 |
| Fsp4HI | GCNGC | 4 cut(s) | 383, 894, 897, 1075 |
| GluI | GCNGC | 4 cut(s) | 383, 894, 897, 1075 |
| Hin1I | GRCGYC | 1 cut(s) | 18 |
| Hin1II | CATG | 1 cut(s) | 283 |
| HinfI | GANTC | 6 cut(s) | 108, 151, 244, 283, 799, 1005 |
| HphI | GGTGA | 8 cut(s) | 125, 632, 641, 680, 707, 716, 746, 895 |
| Hpy166II | GTNNAC | 3 cut(s) | 215, 1047, 1053 |
| Hpy188I | TCNGA | 2 cut(s) | 508, 843 |
| Hpy188III | TCNNGA | 6 cut(s) | 7, 221, 280, 331, 662, 1009 |
| Hpy8I | GTNNAC | 3 cut(s) | 215, 1047, 1053 |
| Hpy99I | CGWCG | 2 cut(s) | 20, 380 |
| HpyAV | CCTTC | 9 cut(s) | 98, 506, 602, 641, 668, 677, 716, 867, 1018 |
| HpyCH4III | ACNGT | 1 cut(s) | 584 |
| HpyCH4IV | ACGT | 2 cut(s) | 18, 1049 |
| HpyCH4V | TGCA | 3 cut(s) | 182, 215, 385 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 127 |
| HpyF3I | CTNAG | 4 cut(s) | 239, 303, 518, 840 |
| HpySE526I | ACGT | 2 cut(s) | 18, 1049 |
| Hsp92I | GRCGYC | 1 cut(s) | 18 |
| Hsp92II | CATG | 1 cut(s) | 283 |
| Kzo9I | GATC | 1 cut(s) | 1000 |
| LmnI | GCTCC | 4 cut(s) | 323, 611, 650, 1071 |
| LpnPI | CCDG | 5 cut(s) | 149, 789, 805, 833, 945 |
| Lsp1109I | GCAGC | 3 cut(s) | 369, 880, 883 |
| LweI | GCATC | 4 cut(s) | 139, 169, 275, 512 |
| MaeII | ACGT | 2 cut(s) | 18, 1049 |
| MaeIII | GTNAC | 5 cut(s) | 190, 369, 535, 578, 584 |
| MalI | GATC | 1 cut(s) | 1002 |
| MbiI | CCGCTC | 1 cut(s) | 1074 |
| MboI | GATC | 1 cut(s) | 1000 |
| MhlI | GDGCHC | 1 cut(s) | 217 |
| MluCI | AATT | 5 cut(s) | 273, 341, 355, 945, 988 |
| MlyI | GAGTC | 2 cut(s) | 117, 292 |
| MmeI | TCCRAC | 1 cut(s) | 566 |
| MseI | TTAA | 2 cut(s) | 948, 981 |
| Mva1269I | GAATGC | 2 cut(s) | 99, 113 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 127 |
| NdeII | GATC | 1 cut(s) | 1000 |
| NlaIII | CATG | 1 cut(s) | 283 |
| NmuCI | GTSAC | 3 cut(s) | 190, 369, 584 |
| PagI | TCATGA | 1 cut(s) | 279 |
| PctI | GAATGC | 2 cut(s) | 99, 113 |
| PfeI | GAWTC | 4 cut(s) | 151, 244, 799, 1005 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 548 |
| PkrI | GCNGC | 4 cut(s) | 384, 895, 898, 1076 |
| PleI | GAGTC | 2 cut(s) | 116, 291 |
| PpsI | GAGTC | 2 cut(s) | 116, 291 |
| Ppu21I | YACGTR | 1 cut(s) | 1050 |
| PstNI | CAGNNNCTG | 1 cut(s) | 932 |
| SaqAI | TTAA | 2 cut(s) | 948, 981 |
| SatI | GCNGC | 4 cut(s) | 383, 894, 897, 1075 |
| Sau3AI | GATC | 1 cut(s) | 1000 |
| SchI | GAGTC | 2 cut(s) | 117, 292 |
| SduI | GDGCHC | 1 cut(s) | 217 |
| SfaNI | GCATC | 4 cut(s) | 139, 169, 275, 512 |
| Sse9I | AATT | 5 cut(s) | 273, 341, 355, 945, 988 |
| SsiI | CCGC | 1 cut(s) | 1074 |
| StyI | CCWWGG | 1 cut(s) | 88 |
| TaaI | ACNGT | 1 cut(s) | 584 |
| TaiI | ACGT | 2 cut(s) | 21, 1052 |
| TaqI | TCGA | 3 cut(s) | 162, 378, 1003 |
| TaqII | GACCGA | 1 cut(s) | 450 |
| TasI | AATT | 5 cut(s) | 273, 341, 355, 945, 988 |
| TauI | GCSGC | 1 cut(s) | 1077 |
| TfiI | GAWTC | 4 cut(s) | 151, 244, 799, 1005 |
| Tru1I | TTAA | 2 cut(s) | 948, 981 |
| Tru9I | TTAA | 2 cut(s) | 948, 981 |
| TscAI | CASTG | 1 cut(s) | 589 |
| TseFI | GTSAC | 3 cut(s) | 190, 369, 584 |
| TseI | GCWGC | 3 cut(s) | 382, 893, 896 |
| Tsp45I | GTSAC | 3 cut(s) | 190, 369, 584 |
| TspDTI | ATGAA | 7 cut(s) | 349, 354, 485, 525, 771, 933, 971 |
| TspRI | CASTG | 1 cut(s) | 589 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 548 |
| VneI | GTGCAC | 1 cut(s) | 213 |
| XapI | RAATTY | 2 cut(s) | 355, 988 |
| XmiI | GTMKAC | 1 cut(s) | 1052 |
| ZraI | GACGTC | 1 cut(s) | 19 |