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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 283 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 695 |
| AclWI | GGATC | 2 cut(s) | 207, 890 |
| AcsI | RAATTY | 1 cut(s) | 926 |
| AfaI | GTAC | 2 cut(s) | 353, 461 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 77, 695 |
| AflIII | ACRYGT | 1 cut(s) | 420 |
| AgsI | TTSAA | 8 cut(s) | 31, 145, 337, 346, 507, 863, 874, 932 |
| AjnI | CCWGG | 1 cut(s) | 720 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 755, 787 |
| AluBI | AGCT | 6 cut(s) | 41, 200, 496, 540, 653, 791 |
| AluI | AGCT | 6 cut(s) | 41, 200, 496, 540, 653, 791 |
| Alw21I | GWGCWC | 1 cut(s) | 832 |
| Alw26I | GTCTC | 2 cut(s) | 97, 605 |
| AlwI | GGATC | 2 cut(s) | 207, 890 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 44 |
| ApeKI | GCWGC | 5 cut(s) | 41, 98, 717, 969, 972 |
| ApoI | RAATTY | 1 cut(s) | 926 |
| AspLEI | GCGC | 1 cut(s) | 284 |
| AsuHPI | GGTGA | 3 cut(s) | 128, 575, 710 |
| AsuII | TTCGAA | 1 cut(s) | 491 |
| AsuNHI | GCTAGC | 1 cut(s) | 395 |
| Bbv12I | GWGCWC | 1 cut(s) | 832 |
| BbvCI | CCTCAGC | 1 cut(s) | 851 |
| BbvI | GCAGC | 5 cut(s) | 28, 110, 729, 981, 984 |
| BcgI | CGANNNNNNTGC | 1 cut(s) | 968 |
| BciT130I | CCWGG | 1 cut(s) | 722 |
| BclI | TGATCA | 1 cut(s) | 129 |
| BcoDI | GTCTC | 2 cut(s) | 97, 605 |
| BfaI | CTAG | 2 cut(s) | 396, 714 |
| BisI | GCNGC | 5 cut(s) | 42, 99, 718, 970, 973 |
| BlsI | GCNGC | 5 cut(s) | 43, 100, 719, 971, 974 |
| Bme1390I | CCNGG | 1 cut(s) | 722 |
| BmiI | GGNNCC | 1 cut(s) | 308 |
| BmrFI | CCNGG | 1 cut(s) | 722 |
| BmsI | GCATC | 3 cut(s) | 367, 426, 696 |
| BmtI | GCTAGC | 1 cut(s) | 399 |
| BpmI | CTGGAG | 1 cut(s) | 761 |
| Bpu10I | CCTNAGC | 1 cut(s) | 851 |
| Bpu14I | TTCGAA | 1 cut(s) | 491 |
| BpuEI | CTTGAG | 1 cut(s) | 274 |
| Bsa29I | ATCGAT | 1 cut(s) | 988 |
| BsaWI | WCCGGW | 1 cut(s) | 9 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 77, 695 |
| Bse1I | ACTGG | 1 cut(s) | 744 |
| Bse3DI | GCAATG | 1 cut(s) | 757 |
| BseBI | CCWGG | 1 cut(s) | 722 |
| BseCI | ATCGAT | 1 cut(s) | 988 |
| BseGI | GGATG | 7 cut(s) | 441, 622, 634, 676, 711, 925, 949 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 77, 695 |
| BseMI | GCAATG | 1 cut(s) | 757 |
| BseMII | CTCAG | 1 cut(s) | 842 |
| BseNI | ACTGG | 1 cut(s) | 744 |
| BseRI | GAGGAG | 4 cut(s) | 623, 659, 827, 868 |
| BseXI | GCAGC | 5 cut(s) | 28, 110, 729, 981, 984 |
| BsgI | GTGCAG | 1 cut(s) | 988 |
| Bsh1285I | CGRYCG | 1 cut(s) | 157 |
| BshVI | ATCGAT | 1 cut(s) | 988 |
| BsiEI | CGRYCG | 1 cut(s) | 157 |
| BsiHKAI | GWGCWC | 1 cut(s) | 832 |
| BsiSI | CCGG | 1 cut(s) | 10 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 77, 695 |
| BsmAI | GTCTC | 2 cut(s) | 97, 605 |
| BsmBI | CGTCTC | 1 cut(s) | 605 |
| Bsp119I | TTCGAA | 1 cut(s) | 491 |
| Bsp1286I | GDGCHC | 1 cut(s) | 832 |
| Bsp143I | GATC | 5 cut(s) | 129, 154, 212, 249, 882 |
| BspCNI | CTCAG | 1 cut(s) | 843 |
| BspDI | ATCGAT | 1 cut(s) | 988 |
| BspLI | GGNNCC | 1 cut(s) | 308 |
| BspOI | GCTAGC | 1 cut(s) | 399 |
| BspPI | GGATC | 2 cut(s) | 207, 890 |
| BspQI | GCTCTTC | 1 cut(s) | 207 |
| BspT104I | TTCGAA | 1 cut(s) | 491 |
| BsrDI | GCAATG | 1 cut(s) | 757 |
| BsrI | ACTGG | 1 cut(s) | 744 |
| BssMI | GATC | 5 cut(s) | 129, 154, 212, 249, 882 |
| Bst2UI | CCWGG | 1 cut(s) | 722 |
| Bst4CI | ACNGT | 2 cut(s) | 108, 563 |
| Bst6I | CTCTTC | 6 cut(s) | 78, 207, 450, 564, 618, 872 |
| BstBI | TTCGAA | 1 cut(s) | 491 |
| BstC8I | GCNNGC | 4 cut(s) | 397, 682, 890, 977 |
| BstDEI | CTNAG | 2 cut(s) | 274, 851 |
| BstF5I | GGATG | 7 cut(s) | 441, 622, 634, 676, 711, 925, 949 |
| BstHHI | GCGC | 1 cut(s) | 284 |
| BstKTI | GATC | 5 cut(s) | 132, 157, 215, 252, 885 |
| BstMAI | GTCTC | 2 cut(s) | 97, 605 |
| BstMBI | GATC | 5 cut(s) | 129, 154, 212, 249, 882 |
| BstMCI | CGRYCG | 1 cut(s) | 157 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 493 |
| BstNI | CCWGG | 1 cut(s) | 722 |
| BstNSI | RCATGY | 4 cut(s) | 424, 466, 503, 979 |
| BstSCI | CCNGG | 1 cut(s) | 720 |
| BstV1I | GCAGC | 5 cut(s) | 28, 110, 729, 981, 984 |
| Bsu15I | ATCGAT | 1 cut(s) | 988 |
| BsuTUI | ATCGAT | 1 cut(s) | 988 |
| BtgZI | GCGATG | 1 cut(s) | 606 |
| BtsCI | GGATG | 7 cut(s) | 441, 622, 634, 676, 711, 925, 949 |
| Cac8I | GCNNGC | 4 cut(s) | 397, 682, 890, 977 |
| CaiI | CAGNNNCTG | 1 cut(s) | 44 |
| CfoI | GCGC | 1 cut(s) | 284 |
| ClaI | ATCGAT | 1 cut(s) | 988 |
| Csp6I | GTAC | 2 cut(s) | 352, 460 |
| CviAII | CATG | 6 cut(s) | 303, 421, 463, 500, 760, 976 |
| CviQI | GTAC | 2 cut(s) | 352, 460 |
| DdeI | CTNAG | 2 cut(s) | 274, 851 |
| DpnI | GATC | 5 cut(s) | 131, 156, 214, 251, 884 |
| DpnII | GATC | 5 cut(s) | 129, 154, 212, 249, 882 |
| DraI | TTTAAA | 1 cut(s) | 795 |
| Eam1104I | CTCTTC | 6 cut(s) | 78, 207, 450, 564, 618, 872 |
| EarI | CTCTTC | 6 cut(s) | 78, 207, 450, 564, 618, 872 |
| EcoRII | CCWGG | 1 cut(s) | 720 |
| Esp3I | CGTCTC | 1 cut(s) | 605 |
| FaeI | CATG | 6 cut(s) | 306, 424, 466, 503, 763, 979 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 189, 221 |
| FatI | CATG | 6 cut(s) | 302, 420, 462, 499, 759, 975 |
| FbaI | TGATCA | 1 cut(s) | 129 |
| Fnu4HI | GCNGC | 5 cut(s) | 42, 99, 718, 970, 973 |
| FokI | GGATG | 7 cut(s) | 448, 629, 641, 683, 718, 932, 956 |
| Fsp4HI | GCNGC | 5 cut(s) | 42, 99, 718, 970, 973 |
| FspAI | RTGCGCAY | 1 cut(s) | 283 |
| FspBI | CTAG | 2 cut(s) | 396, 714 |
| FspI | TGCGCA | 1 cut(s) | 283 |
| GlaI | GCGC | 1 cut(s) | 283 |
| GluI | GCNGC | 5 cut(s) | 42, 99, 718, 970, 973 |
| GsuI | CTGGAG | 1 cut(s) | 761 |
| HapII | CCGG | 1 cut(s) | 10 |
| HhaI | GCGC | 1 cut(s) | 284 |
| Hin1II | CATG | 6 cut(s) | 306, 424, 466, 503, 763, 979 |
| Hin6I | GCGC | 1 cut(s) | 282 |
| HinP1I | GCGC | 1 cut(s) | 282 |
| HindIII | AAGCTT | 1 cut(s) | 789 |
| HinfI | GANTC | 3 cut(s) | 67, 859, 985 |
| HpaII | CCGG | 1 cut(s) | 10 |
| HphI | GGTGA | 3 cut(s) | 128, 575, 710 |
| Hpy188I | TCNGA | 1 cut(s) | 331 |
| Hpy188III | TCNNGA | 2 cut(s) | 253, 433 |
| HpyAV | CCTTC | 2 cut(s) | 656, 757 |
| HpyCH4III | ACNGT | 2 cut(s) | 108, 563 |
| HpyCH4V | TGCA | 7 cut(s) | 188, 227, 302, 426, 476, 969, 979 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 493 |
| HpyF3I | CTNAG | 2 cut(s) | 274, 851 |
| Hsp92II | CATG | 6 cut(s) | 306, 424, 466, 503, 763, 979 |
| HspAI | GCGC | 1 cut(s) | 282 |
| Ksp22I | TGATCA | 1 cut(s) | 129 |
| Kzo9I | GATC | 5 cut(s) | 129, 154, 212, 249, 882 |
| LguI | GCTCTTC | 1 cut(s) | 207 |
| LpnPI | CCDG | 5 cut(s) | 23, 707, 725, 734, 972 |
| Lsp1109I | GCAGC | 5 cut(s) | 28, 110, 729, 981, 984 |
| LweI | GCATC | 3 cut(s) | 367, 426, 696 |
| MaeI | CTAG | 2 cut(s) | 396, 714 |
| MaeIII | GTNAC | 1 cut(s) | 116 |
| MalI | GATC | 5 cut(s) | 131, 156, 214, 251, 884 |
| MboI | GATC | 5 cut(s) | 129, 154, 212, 249, 882 |
| MfeI | CAATTG | 1 cut(s) | 355 |
| MhlI | GDGCHC | 1 cut(s) | 832 |
| MluCI | AATT | 3 cut(s) | 355, 817, 926 |
| MmeI | TCCRAC | 2 cut(s) | 492, 753 |
| MseI | TTAA | 3 cut(s) | 207, 534, 794 |
| MslI | CAYNNNNRTG | 3 cut(s) | 125, 301, 638 |
| MspA1I | CMGCKG | 1 cut(s) | 41 |
| MspI | CCGG | 1 cut(s) | 10 |
| MspR9I | CCNGG | 1 cut(s) | 722 |
| MunI | CAATTG | 1 cut(s) | 355 |
| MvaI | CCWGG | 1 cut(s) | 722 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 493 |
| NdeII | GATC | 5 cut(s) | 129, 154, 212, 249, 882 |
| NheI | GCTAGC | 1 cut(s) | 395 |
| NlaIII | CATG | 6 cut(s) | 306, 424, 466, 503, 763, 979 |
| NlaIV | GGNNCC | 1 cut(s) | 308 |
| NmuCI | GTSAC | 1 cut(s) | 116 |
| NsbI | TGCGCA | 1 cut(s) | 283 |
| NspI | RCATGY | 4 cut(s) | 424, 466, 503, 979 |
| NspV | TTCGAA | 1 cut(s) | 491 |
| PaeI | GCATGC | 1 cut(s) | 979 |
| PciI | ACATGT | 1 cut(s) | 420 |
| PciSI | GCTCTTC | 1 cut(s) | 207 |
| PfeI | GAWTC | 3 cut(s) | 67, 859, 985 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 695 |
| PkrI | GCNGC | 5 cut(s) | 43, 100, 719, 971, 974 |
| Ple19I | CGATCG | 1 cut(s) | 157 |
| PscI | ACATGT | 1 cut(s) | 420 |
| Psp6I | CCWGG | 1 cut(s) | 720 |
| PspGI | CCWGG | 1 cut(s) | 720 |
| PspN4I | GGNNCC | 1 cut(s) | 308 |
| PstNI | CAGNNNCTG | 1 cut(s) | 44 |
| PvuI | CGATCG | 1 cut(s) | 157 |
| PvuII | CAGCTG | 1 cut(s) | 41 |
| RsaI | GTAC | 2 cut(s) | 353, 461 |
| RsaNI | GTAC | 2 cut(s) | 352, 460 |
| RseI | CAYNNNNRTG | 3 cut(s) | 125, 301, 638 |
| SapI | GCTCTTC | 1 cut(s) | 207 |
| SaqAI | TTAA | 3 cut(s) | 207, 534, 794 |
| SatI | GCNGC | 5 cut(s) | 42, 99, 718, 970, 973 |
| Sau3AI | GATC | 5 cut(s) | 129, 154, 212, 249, 882 |
| ScrFI | CCNGG | 1 cut(s) | 722 |
| SduI | GDGCHC | 1 cut(s) | 832 |
| SfaNI | GCATC | 3 cut(s) | 367, 426, 696 |
| SfuI | TTCGAA | 1 cut(s) | 491 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 125, 301, 638 |
| SmlI | CTYRAG | 1 cut(s) | 253 |
| SmoI | CTYRAG | 1 cut(s) | 253 |
| SphI | GCATGC | 1 cut(s) | 979 |
| Sse9I | AATT | 3 cut(s) | 355, 817, 926 |
| SspMI | CTAG | 2 cut(s) | 396, 714 |
| StyD4I | CCNGG | 1 cut(s) | 720 |
| TaaI | ACNGT | 2 cut(s) | 108, 563 |
| TaqI | TCGA | 3 cut(s) | 491, 895, 988 |
| TasI | AATT | 3 cut(s) | 355, 817, 926 |
| TatI | WGTACW | 2 cut(s) | 351, 459 |
| TfiI | GAWTC | 3 cut(s) | 67, 859, 985 |
| Tru1I | TTAA | 3 cut(s) | 207, 534, 794 |
| Tru9I | TTAA | 3 cut(s) | 207, 534, 794 |
| TseFI | GTSAC | 1 cut(s) | 116 |
| TseI | GCWGC | 5 cut(s) | 41, 98, 717, 969, 972 |
| Tsp45I | GTSAC | 1 cut(s) | 116 |
| TspGWI | ACGGA | 1 cut(s) | 629 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 695 |
| XapI | RAATTY | 1 cut(s) | 926 |
| XceI | RCATGY | 4 cut(s) | 424, 466, 503, 979 |
| XspI | CTAG | 2 cut(s) | 396, 714 |