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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 509 |
| Acc16I | TGCGCA | 1 cut(s) | 1265 |
| Acc36I | ACCTGC | 1 cut(s) | 509 |
| AclWI | GGATC | 1 cut(s) | 389 |
| AcsI | RAATTY | 4 cut(s) | 425, 703, 991, 1388 |
| AcuI | CTGAAG | 3 cut(s) | 624, 944, 1215 |
| AfaI | GTAC | 2 cut(s) | 29, 770 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 551 |
| AflII | CTTAAG | 1 cut(s) | 806 |
| AflIII | ACRYGT | 2 cut(s) | 765, 1509 |
| AjnI | CCWGG | 1 cut(s) | 219 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 254, 286 |
| AluBI | AGCT | 8 cut(s) | 64, 108, 290, 329, 562, 922, 968, 1498 |
| AluI | AGCT | 8 cut(s) | 64, 108, 290, 329, 562, 922, 968, 1498 |
| Alw21I | GWGCWC | 2 cut(s) | 331, 857 |
| Alw26I | GTCTC | 3 cut(s) | 173, 925, 952 |
| Alw44I | GTGCAC | 1 cut(s) | 853 |
| AlwI | GGATC | 1 cut(s) | 389 |
| ApaLI | GTGCAC | 1 cut(s) | 853 |
| ApeKI | GCWGC | 4 cut(s) | 216, 469, 472, 838 |
| ApoI | RAATTY | 4 cut(s) | 425, 703, 991, 1388 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 83, 115 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1245 |
| AspLEI | GCGC | 1 cut(s) | 1266 |
| AsuHPI | GGTGA | 1 cut(s) | 1098 |
| BaeGI | GKGCMC | 1 cut(s) | 857 |
| BanII | GRGCYC | 1 cut(s) | 331 |
| BbsI | GAAGAC | 3 cut(s) | 1203, 1415, 1512 |
| Bbv12I | GWGCWC | 2 cut(s) | 331, 857 |
| BbvCI | CCTCAGC | 1 cut(s) | 350 |
| BbvI | GCAGC | 4 cut(s) | 228, 481, 484, 825 |
| BccI | CCATC | 1 cut(s) | 826 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 468, 502 |
| BciT130I | CCWGG | 1 cut(s) | 221 |
| BciVI | GTATCC | 1 cut(s) | 855 |
| BclI | TGATCA | 1 cut(s) | 1185 |
| BcoDI | GTCTC | 3 cut(s) | 173, 925, 952 |
| BfaI | CTAG | 2 cut(s) | 213, 858 |
| BfmI | CTRYAG | 1 cut(s) | 506 |
| BfrI | CTTAAG | 1 cut(s) | 806 |
| BfuAI | ACCTGC | 1 cut(s) | 509 |
| BfuI | GTATCC | 1 cut(s) | 855 |
| BisI | GCNGC | 4 cut(s) | 217, 470, 473, 839 |
| BlsI | GCNGC | 4 cut(s) | 218, 471, 474, 840 |
| Bme1390I | CCNGG | 1 cut(s) | 221 |
| BmrFI | CCNGG | 1 cut(s) | 221 |
| BmsI | GCATC | 2 cut(s) | 601, 1329 |
| BpiI | GAAGAC | 3 cut(s) | 1203, 1415, 1512 |
| BpmI | CTGGAG | 3 cut(s) | 534, 739, 765 |
| Bpu10I | CCTNAGC | 2 cut(s) | 350, 1217 |
| BpuEI | CTTGAG | 1 cut(s) | 302 |
| BsaBI | GATNNNNATC | 2 cut(s) | 540, 817 |
| BsaJI | CCNNGG | 1 cut(s) | 1060 |
| BsaWI | WCCGGW | 1 cut(s) | 238 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 551 |
| Bse3DI | GCAATG | 1 cut(s) | 256 |
| Bse8I | GATNNNNATC | 2 cut(s) | 540, 817 |
| BseBI | CCWGG | 1 cut(s) | 221 |
| BseDI | CCNNGG | 1 cut(s) | 1060 |
| BseGI | GGATG | 8 cut(s) | 190, 202, 424, 448, 496, 541, 1176, 1344 |
| BseJI | GATNNNNATC | 2 cut(s) | 540, 817 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 551 |
| BseMI | GCAATG | 1 cut(s) | 256 |
| BseMII | CTCAG | 4 cut(s) | 341, 453, 540, 713 |
| BseRI | GAGGAG | 4 cut(s) | 191, 326, 367, 768 |
| BseSI | GKGCMC | 1 cut(s) | 857 |
| BseXI | GCAGC | 4 cut(s) | 228, 481, 484, 825 |
| BsgI | GTGCAG | 1 cut(s) | 488 |
| BsiHKAI | GWGCWC | 2 cut(s) | 331, 857 |
| BsiSI | CCGG | 1 cut(s) | 239 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 551 |
| BsmAI | GTCTC | 3 cut(s) | 173, 925, 952 |
| BsmBI | CGTCTC | 1 cut(s) | 173 |
| BsmI | GAATGC | 2 cut(s) | 659, 1309 |
| Bsp1286I | GDGCHC | 2 cut(s) | 331, 857 |
| Bsp1407I | TGTACA | 1 cut(s) | 768 |
| Bsp143I | GATC | 3 cut(s) | 381, 812, 1185 |
| BspCNI | CTCAG | 4 cut(s) | 342, 454, 541, 714 |
| BspHI | TCATGA | 1 cut(s) | 1068 |
| BspMI | ACCTGC | 1 cut(s) | 509 |
| BspPI | GGATC | 1 cut(s) | 389 |
| BspTI | CTTAAG | 1 cut(s) | 806 |
| BsrDI | GCAATG | 1 cut(s) | 256 |
| BsrGI | TGTACA | 1 cut(s) | 768 |
| BssECI | CCNNGG | 1 cut(s) | 1060 |
| BssMI | GATC | 3 cut(s) | 381, 812, 1185 |
| BssT1I | CCWWGG | 1 cut(s) | 1060 |
| Bst2UI | CCWGG | 1 cut(s) | 221 |
| Bst4CI | ACNGT | 3 cut(s) | 131, 936, 1163 |
| Bst6I | CTCTTC | 7 cut(s) | 18, 132, 186, 371, 396, 675, 923 |
| BstAFI | CTTAAG | 1 cut(s) | 806 |
| BstAUI | TGTACA | 1 cut(s) | 768 |
| BstC8I | GCNNGC | 1 cut(s) | 477 |
| BstDEI | CTNAG | 6 cut(s) | 350, 462, 549, 722, 1153, 1217 |
| BstF5I | GGATG | 8 cut(s) | 190, 202, 424, 448, 496, 541, 1176, 1344 |
| BstHHI | GCGC | 1 cut(s) | 1266 |
| BstKTI | GATC | 3 cut(s) | 384, 815, 1188 |
| BstMAI | GTCTC | 3 cut(s) | 173, 925, 952 |
| BstMBI | GATC | 3 cut(s) | 381, 812, 1185 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 61 |
| BstNI | CCWGG | 1 cut(s) | 221 |
| BstNSI | RCATGY | 4 cut(s) | 71, 479, 769, 1513 |
| BstSCI | CCNGG | 1 cut(s) | 219 |
| BstSFI | CTRYAG | 1 cut(s) | 506 |
| BstSLI | GKGCMC | 1 cut(s) | 857 |
| BstV1I | GCAGC | 4 cut(s) | 228, 481, 484, 825 |
| BstV2I | GAAGAC | 3 cut(s) | 1203, 1415, 1512 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1315 |
| BsuI | GTATCC | 1 cut(s) | 855 |
| BtgZI | GCGATG | 1 cut(s) | 174 |
| BtsCI | GGATG | 8 cut(s) | 190, 202, 424, 448, 496, 541, 1176, 1344 |
| BtsIMutI | CAGTG | 7 cut(s) | 87, 136, 606, 648, 714, 1098, 1159 |
| BveI | ACCTGC | 1 cut(s) | 509 |
| Cac8I | GCNNGC | 1 cut(s) | 477 |
| CciI | TCATGA | 1 cut(s) | 1068 |
| CfoI | GCGC | 1 cut(s) | 1266 |
| Csp6I | GTAC | 2 cut(s) | 28, 769 |
| CviAII | CATG | 8 cut(s) | 68, 259, 476, 766, 842, 1069, 1141, 1510 |
| CviQI | GTAC | 2 cut(s) | 28, 769 |
| DdeI | CTNAG | 6 cut(s) | 350, 462, 549, 722, 1153, 1217 |
| DpnI | GATC | 3 cut(s) | 383, 814, 1187 |
| DpnII | GATC | 3 cut(s) | 381, 812, 1185 |
| DraI | TTTAAA | 1 cut(s) | 294 |
| Eam1104I | CTCTTC | 7 cut(s) | 18, 132, 186, 371, 396, 675, 923 |
| EarI | CTCTTC | 7 cut(s) | 18, 132, 186, 371, 396, 675, 923 |
| Ecl136II | GAGCTC | 1 cut(s) | 329 |
| Eco130I | CCWWGG | 1 cut(s) | 1060 |
| Eco24I | GRGCYC | 1 cut(s) | 331 |
| Eco53kI | GAGCTC | 1 cut(s) | 329 |
| Eco57I | CTGAAG | 3 cut(s) | 624, 944, 1215 |
| EcoICRI | GAGCTC | 1 cut(s) | 329 |
| EcoRII | CCWGG | 1 cut(s) | 219 |
| EcoT14I | CCWWGG | 1 cut(s) | 1060 |
| EcoT38I | GRGCYC | 1 cut(s) | 331 |
| ErhI | CCWWGG | 1 cut(s) | 1060 |
| Esp3I | CGTCTC | 1 cut(s) | 173 |
| FaeI | CATG | 8 cut(s) | 71, 262, 479, 769, 845, 1072, 1144, 1513 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 957, 989 |
| FatI | CATG | 8 cut(s) | 67, 258, 475, 765, 841, 1068, 1140, 1509 |
| FauNDI | CATATG | 1 cut(s) | 1078 |
| FbaI | TGATCA | 1 cut(s) | 1185 |
| Fnu4HI | GCNGC | 4 cut(s) | 217, 470, 473, 839 |
| FokI | GGATG | 8 cut(s) | 197, 209, 431, 455, 503, 548, 1163, 1351 |
| FriOI | GRGCYC | 1 cut(s) | 331 |
| Fsp4HI | GCNGC | 4 cut(s) | 217, 470, 473, 839 |
| FspBI | CTAG | 2 cut(s) | 213, 858 |
| FspI | TGCGCA | 1 cut(s) | 1265 |
| GlaI | GCGC | 1 cut(s) | 1265 |
| GluI | GCNGC | 4 cut(s) | 217, 470, 473, 839 |
| GsuI | CTGGAG | 3 cut(s) | 534, 739, 765 |
| HapII | CCGG | 1 cut(s) | 239 |
| HhaI | GCGC | 1 cut(s) | 1266 |
| Hin1II | CATG | 8 cut(s) | 71, 262, 479, 769, 845, 1072, 1144, 1513 |
| Hin6I | GCGC | 1 cut(s) | 1264 |
| HinP1I | GCGC | 1 cut(s) | 1264 |
| HindIII | AAGCTT | 1 cut(s) | 288 |
| HinfI | GANTC | 9 cut(s) | 358, 485, 752, 846, 1065, 1088, 1136, 1147, 1246 |
| HpaII | CCGG | 1 cut(s) | 239 |
| HphI | GGTGA | 1 cut(s) | 1098 |
| Hpy166II | GTNNAC | 2 cut(s) | 604, 855 |
| Hpy188I | TCNGA | 3 cut(s) | 60, 490, 1397 |
| Hpy188III | TCNNGA | 3 cut(s) | 782, 1069, 1189 |
| Hpy8I | GTNNAC | 2 cut(s) | 604, 855 |
| HpyAV | CCTTC | 6 cut(s) | 166, 256, 317, 526, 971, 1225 |
| HpyCH4III | ACNGT | 3 cut(s) | 131, 936, 1163 |
| HpyCH4IV | ACGT | 2 cut(s) | 201, 1334 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 61 |
| HpyF3I | CTNAG | 6 cut(s) | 350, 462, 549, 722, 1153, 1217 |
| HpySE526I | ACGT | 2 cut(s) | 201, 1334 |
| Hsp92II | CATG | 8 cut(s) | 71, 262, 479, 769, 845, 1072, 1144, 1513 |
| HspAI | GCGC | 1 cut(s) | 1264 |
| Ksp22I | TGATCA | 1 cut(s) | 1185 |
| Kzo9I | GATC | 3 cut(s) | 381, 812, 1185 |
| LmnI | GCTCC | 2 cut(s) | 326, 515 |
| Lsp1109I | GCAGC | 4 cut(s) | 228, 481, 484, 825 |
| LweI | GCATC | 2 cut(s) | 601, 1329 |
| MaeI | CTAG | 2 cut(s) | 213, 858 |
| MaeII | ACGT | 2 cut(s) | 201, 1334 |
| MaeIII | GTNAC | 2 cut(s) | 1163, 1327 |
| MalI | GATC | 3 cut(s) | 383, 814, 1187 |
| MboI | GATC | 3 cut(s) | 381, 812, 1185 |
| MhlI | GDGCHC | 2 cut(s) | 331, 857 |
| MluCI | AATT | 8 cut(s) | 302, 316, 425, 573, 703, 991, 1388, 1534 |
| MlyI | GAGTC | 3 cut(s) | 746, 855, 1141 |
| MmeI | TCCRAC | 2 cut(s) | 60, 1065 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1245 |
| MseI | TTAA | 4 cut(s) | 293, 807, 1115, 1493 |
| MspCI | CTTAAG | 1 cut(s) | 806 |
| MspI | CCGG | 1 cut(s) | 239 |
| MspR9I | CCNGG | 1 cut(s) | 221 |
| Mva1269I | GAATGC | 2 cut(s) | 659, 1309 |
| MvaI | CCWGG | 1 cut(s) | 221 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 61 |
| NdeI | CATATG | 1 cut(s) | 1078 |
| NdeII | GATC | 3 cut(s) | 381, 812, 1185 |
| NlaIII | CATG | 8 cut(s) | 71, 262, 479, 769, 845, 1072, 1144, 1513 |
| NmuCI | GTSAC | 2 cut(s) | 1163, 1327 |
| NsbI | TGCGCA | 1 cut(s) | 1265 |
| NspI | RCATGY | 4 cut(s) | 71, 479, 769, 1513 |
| PaeI | GCATGC | 1 cut(s) | 479 |
| PagI | TCATGA | 1 cut(s) | 1068 |
| PaqCI | CACCTGC | 1 cut(s) | 509 |
| PciI | ACATGT | 2 cut(s) | 765, 1509 |
| PctI | GAATGC | 2 cut(s) | 659, 1309 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1245 |
| PfeI | GAWTC | 6 cut(s) | 358, 485, 1065, 1088, 1136, 1246 |
| PkrI | GCNGC | 4 cut(s) | 218, 471, 474, 840 |
| PleI | GAGTC | 3 cut(s) | 746, 854, 1141 |
| PpsI | GAGTC | 3 cut(s) | 746, 854, 1141 |
| PscI | ACATGT | 2 cut(s) | 765, 1509 |
| Psp124BI | GAGCTC | 1 cut(s) | 331 |
| Psp6I | CCWGG | 1 cut(s) | 219 |
| PspGI | CCWGG | 1 cut(s) | 219 |
| RsaI | GTAC | 2 cut(s) | 29, 770 |
| RsaNI | GTAC | 2 cut(s) | 28, 769 |
| SacI | GAGCTC | 1 cut(s) | 331 |
| SaqAI | TTAA | 4 cut(s) | 293, 807, 1115, 1493 |
| SatI | GCNGC | 4 cut(s) | 217, 470, 473, 839 |
| Sau3AI | GATC | 3 cut(s) | 381, 812, 1185 |
| SchI | GAGTC | 3 cut(s) | 746, 855, 1141 |
| ScrFI | CCNGG | 1 cut(s) | 221 |
| SduI | GDGCHC | 2 cut(s) | 331, 857 |
| SfaNI | GCATC | 2 cut(s) | 601, 1329 |
| SfcI | CTRYAG | 1 cut(s) | 506 |
| SmlI | CTYRAG | 2 cut(s) | 281, 806 |
| SmoI | CTYRAG | 2 cut(s) | 281, 806 |
| SphI | GCATGC | 1 cut(s) | 479 |
| Sse9I | AATT | 8 cut(s) | 302, 316, 425, 573, 703, 991, 1388, 1534 |
| SspMI | CTAG | 2 cut(s) | 213, 858 |
| SstI | GAGCTC | 1 cut(s) | 331 |
| StyD4I | CCNGG | 1 cut(s) | 219 |
| StyI | CCWWGG | 1 cut(s) | 1060 |
| TaaI | ACNGT | 3 cut(s) | 131, 936, 1163 |
| TaiI | ACGT | 2 cut(s) | 204, 1337 |
| TaqI | TCGA | 1 cut(s) | 394 |
| TaqII | GACCGA | 1 cut(s) | 635 |
| TasI | AATT | 8 cut(s) | 302, 316, 425, 573, 703, 991, 1388, 1534 |
| TatI | WGTACW | 2 cut(s) | 27, 768 |
| TfiI | GAWTC | 6 cut(s) | 358, 485, 1065, 1088, 1136, 1246 |
| Tru1I | TTAA | 4 cut(s) | 293, 807, 1115, 1493 |
| Tru9I | TTAA | 4 cut(s) | 293, 807, 1115, 1493 |
| TscAI | CASTG | 7 cut(s) | 94, 136, 613, 648, 714, 1098, 1166 |
| TseFI | GTSAC | 2 cut(s) | 1163, 1327 |
| TseI | GCWGC | 4 cut(s) | 216, 469, 472, 838 |
| Tsp45I | GTSAC | 2 cut(s) | 1163, 1327 |
| TspGWI | ACGGA | 1 cut(s) | 197 |
| TspRI | CASTG | 7 cut(s) | 94, 136, 613, 648, 714, 1098, 1166 |
| Vha464I | CTTAAG | 1 cut(s) | 806 |
| VneI | GTGCAC | 1 cut(s) | 853 |
| XapI | RAATTY | 4 cut(s) | 425, 703, 991, 1388 |
| XceI | RCATGY | 4 cut(s) | 71, 479, 769, 1513 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1245 |
| XspI | CTAG | 2 cut(s) | 213, 858 |