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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 2 cut(s) | 162, 747 |
| AclWI | GGATC | 1 cut(s) | 922 |
| AcyI | GRCGYC | 2 cut(s) | 159, 744 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 15 |
| AgsI | TTSAA | 5 cut(s) | 49, 373, 562, 691, 719 |
| AjiI | CACGTC | 1 cut(s) | 453 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 159, 191, 812, 844 |
| AluBI | AGCT | 3 cut(s) | 262, 589, 811 |
| AluI | AGCT | 3 cut(s) | 262, 589, 811 |
| Alw21I | GWGCWC | 1 cut(s) | 358 |
| Alw26I | GTCTC | 1 cut(s) | 527 |
| Alw44I | GTGCAC | 1 cut(s) | 354 |
| AlwI | GGATC | 1 cut(s) | 922 |
| ApaLI | GTGCAC | 1 cut(s) | 354 |
| ApeKI | GCWGC | 1 cut(s) | 754 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 617, 649 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 566 |
| AsuHPI | GGTGA | 5 cut(s) | 562, 896, 905, 935, 944 |
| BaeGI | GKGCMC | 1 cut(s) | 358 |
| BbsI | GAAGAC | 2 cut(s) | 73, 648 |
| Bbv12I | GWGCWC | 1 cut(s) | 358 |
| BbvI | GCAGC | 1 cut(s) | 766 |
| BccI | CCATC | 7 cut(s) | 93, 230, 337, 875, 884, 914, 923 |
| BciVI | GTATCC | 2 cut(s) | 186, 445 |
| BclI | TGATCA | 1 cut(s) | 21 |
| BcoDI | GTCTC | 1 cut(s) | 527 |
| BfaI | CTAG | 1 cut(s) | 590 |
| BfuI | GTATCC | 2 cut(s) | 186, 445 |
| BglII | AGATCT | 1 cut(s) | 669 |
| BisI | GCNGC | 1 cut(s) | 755 |
| BlsI | GCNGC | 1 cut(s) | 756 |
| BmgBI | CACGTC | 1 cut(s) | 453 |
| BmsI | GCATC | 2 cut(s) | 306, 310 |
| BpiI | GAAGAC | 2 cut(s) | 73, 648 |
| BpmI | CTGGAG | 1 cut(s) | 836 |
| BpuEI | CTTGAG | 2 cut(s) | 534, 822 |
| BsaBI | GATNNNNATC | 1 cut(s) | 668 |
| BsaHI | GRCGYC | 2 cut(s) | 159, 744 |
| BsaJI | CCNNGG | 2 cut(s) | 229, 380 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 15 |
| Bse1I | ACTGG | 1 cut(s) | 819 |
| Bse3DI | GCAATG | 1 cut(s) | 407 |
| Bse8I | GATNNNNATC | 1 cut(s) | 668 |
| BseDI | CCNNGG | 2 cut(s) | 229, 380 |
| BseGI | GGATG | 2 cut(s) | 24, 895 |
| BseJI | GATNNNNATC | 1 cut(s) | 668 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 15 |
| BseMI | GCAATG | 1 cut(s) | 407 |
| BseMII | CTCAG | 1 cut(s) | 128 |
| BseNI | ACTGG | 1 cut(s) | 819 |
| BseSI | GKGCMC | 1 cut(s) | 358 |
| BseXI | GCAGC | 1 cut(s) | 766 |
| BsgI | GTGCAG | 1 cut(s) | 433 |
| BsiHKAI | GWGCWC | 1 cut(s) | 358 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 15 |
| BsmAI | GTCTC | 1 cut(s) | 527 |
| BsmI | GAATGC | 2 cut(s) | 116, 240 |
| Bsp1286I | GDGCHC | 1 cut(s) | 358 |
| Bsp143I | GATC | 4 cut(s) | 21, 69, 669, 914 |
| BspCNI | CTCAG | 1 cut(s) | 129 |
| BspHI | TCATGA | 1 cut(s) | 420 |
| BspPI | GGATC | 1 cut(s) | 922 |
| BsrDI | GCAATG | 1 cut(s) | 407 |
| BsrI | ACTGG | 1 cut(s) | 819 |
| BssECI | CCNNGG | 2 cut(s) | 229, 380 |
| BssMI | GATC | 4 cut(s) | 21, 69, 669, 914 |
| BssNI | GRCGYC | 2 cut(s) | 159, 744 |
| BssT1I | CCWWGG | 2 cut(s) | 229, 380 |
| Bst4CI | ACNGT | 2 cut(s) | 872, 878 |
| Bst6I | CTCTTC | 2 cut(s) | 570, 894 |
| BstACI | GRCGYC | 2 cut(s) | 159, 744 |
| BstDEI | CTNAG | 1 cut(s) | 137 |
| BstF5I | GGATG | 2 cut(s) | 24, 895 |
| BstKTI | GATC | 4 cut(s) | 24, 72, 672, 917 |
| BstMAI | GTCTC | 1 cut(s) | 527 |
| BstMBI | GATC | 4 cut(s) | 21, 69, 669, 914 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 268, 595 |
| BstNSI | RCATGY | 1 cut(s) | 598 |
| BstSLI | GKGCMC | 1 cut(s) | 358 |
| BstV1I | GCAGC | 1 cut(s) | 766 |
| BstV2I | GAAGAC | 2 cut(s) | 73, 648 |
| BstX2I | RGATCY | 2 cut(s) | 669, 914 |
| BstYI | RGATCY | 2 cut(s) | 669, 914 |
| BsuI | GTATCC | 2 cut(s) | 186, 445 |
| BtgZI | GCGATG | 1 cut(s) | 356 |
| BtrI | CACGTC | 1 cut(s) | 453 |
| BtsCI | GGATG | 2 cut(s) | 24, 895 |
| BtsIMutI | CAGTG | 1 cut(s) | 883 |
| CciI | TCATGA | 1 cut(s) | 420 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 384, 419 |
| CviAII | CATG | 3 cut(s) | 89, 421, 595 |
| CviJI | RGCY | 6 cut(s) | 221, 262, 283, 589, 632, 811 |
| CviKI_1 | RGCY | 6 cut(s) | 221, 262, 283, 589, 632, 811 |
| DdeI | CTNAG | 1 cut(s) | 137 |
| DpnI | GATC | 4 cut(s) | 23, 71, 671, 916 |
| DpnII | GATC | 4 cut(s) | 21, 69, 669, 914 |
| DraI | TTTAAA | 1 cut(s) | 99 |
| Eam1104I | CTCTTC | 2 cut(s) | 570, 894 |
| EarI | CTCTTC | 2 cut(s) | 570, 894 |
| Eco130I | CCWWGG | 2 cut(s) | 229, 380 |
| EcoT14I | CCWWGG | 2 cut(s) | 229, 380 |
| ErhI | CCWWGG | 2 cut(s) | 229, 380 |
| FaeI | CATG | 3 cut(s) | 92, 424, 598 |
| FaiI | YATR | 9 cut(s) | 12, 78, 90, 154, 422, 596, 650, 827, 863 |
| FatI | CATG | 3 cut(s) | 88, 420, 594 |
| FbaI | TGATCA | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 1 cut(s) | 755 |
| FokI | GGATG | 2 cut(s) | 31, 902 |
| Fsp4HI | GCNGC | 1 cut(s) | 755 |
| FspBI | CTAG | 1 cut(s) | 590 |
| GluI | GCNGC | 1 cut(s) | 755 |
| GsuI | CTGGAG | 1 cut(s) | 836 |
| Hin1I | GRCGYC | 2 cut(s) | 159, 744 |
| Hin1II | CATG | 3 cut(s) | 92, 424, 598 |
| HincII | GTYRAC | 1 cut(s) | 163 |
| HindII | GTYRAC | 1 cut(s) | 163 |
| HinfI | GANTC | 6 cut(s) | 249, 365, 385, 424, 520, 833 |
| HphI | GGTGA | 5 cut(s) | 562, 896, 905, 935, 944 |
| Hpy166II | GTNNAC | 3 cut(s) | 163, 356, 570 |
| Hpy188I | TCNGA | 2 cut(s) | 138, 919 |
| Hpy188III | TCNNGA | 6 cut(s) | 29, 148, 421, 551, 779, 839 |
| Hpy8I | GTNNAC | 3 cut(s) | 163, 356, 570 |
| Hpy99I | CGWCG | 2 cut(s) | 161, 520 |
| HpyAV | CCTTC | 5 cut(s) | 8, 239, 448, 905, 932 |
| HpyCH4III | ACNGT | 2 cut(s) | 872, 878 |
| HpyCH4IV | ACGT | 3 cut(s) | 159, 452, 744 |
| HpyCH4V | TGCA | 7 cut(s) | 114, 297, 323, 356, 450, 598, 676 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 268, 595 |
| HpyF3I | CTNAG | 1 cut(s) | 137 |
| HpySE526I | ACGT | 3 cut(s) | 159, 452, 744 |
| Hsp92I | GRCGYC | 2 cut(s) | 159, 744 |
| Hsp92II | CATG | 3 cut(s) | 92, 424, 598 |
| Ksp22I | TGATCA | 1 cut(s) | 21 |
| Kzo9I | GATC | 4 cut(s) | 21, 69, 669, 914 |
| LpnPI | CCDG | 8 cut(s) | 42, 49, 290, 474, 554, 764, 779, 800 |
| Lsp1109I | GCAGC | 1 cut(s) | 766 |
| LweI | GCATC | 2 cut(s) | 306, 310 |
| MaeI | CTAG | 1 cut(s) | 590 |
| MaeII | ACGT | 3 cut(s) | 159, 452, 744 |
| MaeIII | GTNAC | 3 cut(s) | 250, 331, 872 |
| MalI | GATC | 4 cut(s) | 23, 71, 671, 916 |
| MboI | GATC | 4 cut(s) | 21, 69, 669, 914 |
| MflI | RGATCY | 2 cut(s) | 669, 914 |
| MhlI | GDGCHC | 1 cut(s) | 358 |
| MluCI | AATT | 4 cut(s) | 292, 414, 683, 788 |
| MlyI | GAGTC | 3 cut(s) | 258, 433, 529 |
| MmeI | TCCRAC | 2 cut(s) | 603, 810 |
| MroXI | GAANNNNTTC | 1 cut(s) | 566 |
| MseI | TTAA | 1 cut(s) | 98 |
| Mva1269I | GAATGC | 2 cut(s) | 116, 240 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 268, 595 |
| NdeII | GATC | 4 cut(s) | 21, 69, 669, 914 |
| NlaIII | CATG | 3 cut(s) | 92, 424, 598 |
| NmuCI | GTSAC | 2 cut(s) | 250, 331 |
| NspI | RCATGY | 1 cut(s) | 598 |
| PagI | TCATGA | 1 cut(s) | 420 |
| PctI | GAATGC | 2 cut(s) | 116, 240 |
| PdmI | GAANNNNTTC | 1 cut(s) | 566 |
| PfeI | GAWTC | 3 cut(s) | 365, 385, 833 |
| PkrI | GCNGC | 1 cut(s) | 756 |
| PleI | GAGTC | 3 cut(s) | 257, 432, 528 |
| PpsI | GAGTC | 3 cut(s) | 257, 432, 528 |
| PsuI | RGATCY | 2 cut(s) | 669, 914 |
| SaqAI | TTAA | 1 cut(s) | 98 |
| SatI | GCNGC | 1 cut(s) | 755 |
| Sau3AI | GATC | 4 cut(s) | 21, 69, 669, 914 |
| SchI | GAGTC | 3 cut(s) | 258, 433, 529 |
| SduI | GDGCHC | 1 cut(s) | 358 |
| SfaNI | GCATC | 2 cut(s) | 306, 310 |
| SmlI | CTYRAG | 2 cut(s) | 549, 837 |
| SmoI | CTYRAG | 2 cut(s) | 549, 837 |
| Sse9I | AATT | 4 cut(s) | 292, 414, 683, 788 |
| SspMI | CTAG | 1 cut(s) | 590 |
| StyI | CCWWGG | 2 cut(s) | 229, 380 |
| TaaI | ACNGT | 2 cut(s) | 872, 878 |
| TaiI | ACGT | 3 cut(s) | 162, 455, 747 |
| TaqI | TCGA | 3 cut(s) | 258, 303, 363 |
| TasI | AATT | 4 cut(s) | 292, 414, 683, 788 |
| TfiI | GAWTC | 3 cut(s) | 365, 385, 833 |
| Tru1I | TTAA | 1 cut(s) | 98 |
| Tru9I | TTAA | 1 cut(s) | 98 |
| TscAI | CASTG | 1 cut(s) | 883 |
| TseFI | GTSAC | 2 cut(s) | 250, 331 |
| TseI | GCWGC | 1 cut(s) | 754 |
| Tsp45I | GTSAC | 2 cut(s) | 250, 331 |
| TspDTI | ATGAA | 4 cut(s) | 17, 27, 597, 801 |
| TspGWI | ACGGA | 1 cut(s) | 865 |
| TspRI | CASTG | 1 cut(s) | 883 |
| VneI | GTGCAC | 1 cut(s) | 354 |
| XceI | RCATGY | 1 cut(s) | 598 |
| XmnI | GAANNNNTTC | 1 cut(s) | 566 |
| XspI | CTAG | 1 cut(s) | 590 |
| ZraI | GACGTC | 2 cut(s) | 160, 745 |