Protein DCL, chloroplastic-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| DUF3223 | PF11523 | 103 - 149 | 6.8e-11 | Protein of unknown function (DUF3223) |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 15, 189 |
| AccBSI | CCGCTC | 1 cut(s) | 339 |
| AccIII | TCCGGA | 1 cut(s) | 425 |
| AciI | CCGC | 4 cut(s) | 97, 163, 290, 339 |
| AcsI | RAATTY | 1 cut(s) | 71 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 187, 296 |
| AgsI | TTSAA | 1 cut(s) | 138 |
| AjnI | CCWGG | 1 cut(s) | 30 |
| AluBI | AGCT | 1 cut(s) | 407 |
| AluI | AGCT | 1 cut(s) | 407 |
| Alw26I | GTCTC | 1 cut(s) | 151 |
| Ama87I | CYCGRG | 1 cut(s) | 356 |
| Aor13HI | TCCGGA | 1 cut(s) | 425 |
| ApeKI | GCWGC | 2 cut(s) | 385, 407 |
| ApoI | RAATTY | 1 cut(s) | 71 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 75 |
| AsuC2I | CCSGG | 1 cut(s) | 200 |
| AsuHPI | GGTGA | 2 cut(s) | 16, 248 |
| AvaI | CYCGRG | 1 cut(s) | 356 |
| BbsI | GAAGAC | 2 cut(s) | 285, 374 |
| BbvI | GCAGC | 2 cut(s) | 372, 394 |
| BciT130I | CCWGG | 1 cut(s) | 32 |
| BcnI | CCSGG | 1 cut(s) | 200 |
| BcoDI | GTCTC | 1 cut(s) | 151 |
| BfaI | CTAG | 1 cut(s) | 80 |
| BisI | GCNGC | 2 cut(s) | 386, 408 |
| BlsI | GCNGC | 2 cut(s) | 387, 409 |
| Bme1390I | CCNGG | 2 cut(s) | 32, 200 |
| BmeT110I | CYCGRG | 1 cut(s) | 356 |
| BmiI | GGNNCC | 2 cut(s) | 288, 424 |
| BmrFI | CCNGG | 2 cut(s) | 32, 200 |
| BmsI | GCATC | 1 cut(s) | 57 |
| BpiI | GAAGAC | 2 cut(s) | 285, 374 |
| BpuEI | CTTGAG | 1 cut(s) | 398 |
| BpuMI | CCSGG | 1 cut(s) | 200 |
| Bsa29I | ATCGAT | 1 cut(s) | 51 |
| BsaJI | CCNNGG | 1 cut(s) | 31 |
| BsaWI | WCCGGW | 1 cut(s) | 425 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 83, 113 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 187, 296 |
| Bse3DI | GCAATG | 1 cut(s) | 121 |
| BseAI | TCCGGA | 1 cut(s) | 425 |
| BseBI | CCWGG | 1 cut(s) | 32 |
| BseCI | ATCGAT | 1 cut(s) | 51 |
| BseDI | CCNNGG | 1 cut(s) | 31 |
| BseGI | GGATG | 2 cut(s) | 315, 397 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 187, 296 |
| BseMI | GCAATG | 1 cut(s) | 121 |
| BseXI | GCAGC | 2 cut(s) | 372, 394 |
| BshVI | ATCGAT | 1 cut(s) | 51 |
| BsiHKCI | CYCGRG | 1 cut(s) | 356 |
| BsiSI | CCGG | 2 cut(s) | 199, 426 |
| BslFI | GGGAC | 2 cut(s) | 225, 339 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 187, 296 |
| BsmAI | GTCTC | 1 cut(s) | 151 |
| BsmFI | GGGAC | 2 cut(s) | 225, 339 |
| BsoBI | CYCGRG | 1 cut(s) | 356 |
| Bsp13I | TCCGGA | 1 cut(s) | 425 |
| Bsp143I | GATC | 1 cut(s) | 417 |
| BspACI | CCGC | 4 cut(s) | 97, 163, 290, 339 |
| BspDI | ATCGAT | 1 cut(s) | 51 |
| BspEI | TCCGGA | 1 cut(s) | 425 |
| BspLI | GGNNCC | 2 cut(s) | 288, 424 |
| BsrBI | CCGCTC | 1 cut(s) | 339 |
| BsrDI | GCAATG | 1 cut(s) | 121 |
| BssECI | CCNNGG | 1 cut(s) | 31 |
| BssMI | GATC | 1 cut(s) | 417 |
| Bst2UI | CCWGG | 1 cut(s) | 32 |
| Bst4CI | ACNGT | 4 cut(s) | 12, 286, 373, 445 |
| BstF5I | GGATG | 2 cut(s) | 315, 397 |
| BstKTI | GATC | 1 cut(s) | 420 |
| BstMAI | GTCTC | 1 cut(s) | 151 |
| BstMBI | GATC | 1 cut(s) | 417 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 169 |
| BstNI | CCWGG | 1 cut(s) | 32 |
| BstSCI | CCNGG | 2 cut(s) | 30, 198 |
| BstV1I | GCAGC | 2 cut(s) | 372, 394 |
| BstV2I | GAAGAC | 2 cut(s) | 285, 374 |
| Bsu15I | ATCGAT | 1 cut(s) | 51 |
| BsuTUI | ATCGAT | 1 cut(s) | 51 |
| BtsCI | GGATG | 2 cut(s) | 315, 397 |
| BtsIMutI | CAGTG | 1 cut(s) | 119 |
| ClaI | ATCGAT | 1 cut(s) | 51 |
| CviAII | CATG | 1 cut(s) | 362 |
| CviJI | RGCY | 6 cut(s) | 27, 43, 58, 180, 385, 407 |
| CviKI_1 | RGCY | 6 cut(s) | 27, 43, 58, 180, 385, 407 |
| DpnI | GATC | 1 cut(s) | 419 |
| DpnII | GATC | 1 cut(s) | 417 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 15, 189 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 15, 189 |
| Eco88I | CYCGRG | 1 cut(s) | 356 |
| EcoRI | GAATTC | 1 cut(s) | 71 |
| EcoRII | CCWGG | 1 cut(s) | 30 |
| FaeI | CATG | 1 cut(s) | 365 |
| FaiI | YATR | 5 cut(s) | 24, 305, 333, 363, 448 |
| FaqI | GGGAC | 2 cut(s) | 225, 339 |
| FatI | CATG | 1 cut(s) | 361 |
| Fnu4HI | GCNGC | 2 cut(s) | 386, 408 |
| FokI | GGATG | 2 cut(s) | 322, 384 |
| Fsp4HI | GCNGC | 2 cut(s) | 386, 408 |
| FspBI | CTAG | 1 cut(s) | 80 |
| GluI | GCNGC | 2 cut(s) | 386, 408 |
| HapII | CCGG | 2 cut(s) | 199, 426 |
| Hin1II | CATG | 1 cut(s) | 365 |
| HinfI | GANTC | 4 cut(s) | 218, 271, 313, 352 |
| HpaII | CCGG | 2 cut(s) | 199, 426 |
| HphI | GGTGA | 2 cut(s) | 16, 248 |
| Hpy166II | GTNNAC | 1 cut(s) | 207 |
| Hpy188I | TCNGA | 3 cut(s) | 156, 195, 223 |
| Hpy188III | TCNNGA | 6 cut(s) | 138, 275, 356, 377, 401, 426 |
| Hpy8I | GTNNAC | 1 cut(s) | 207 |
| HpyAV | CCTTC | 2 cut(s) | 227, 236 |
| HpyCH4III | ACNGT | 4 cut(s) | 12, 286, 373, 445 |
| HpyCH4IV | ACGT | 1 cut(s) | 438 |
| HpyCH4V | TGCA | 2 cut(s) | 119, 410 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 169 |
| HpySE526I | ACGT | 1 cut(s) | 438 |
| Hsp92II | CATG | 1 cut(s) | 365 |
| Kpn2I | TCCGGA | 1 cut(s) | 425 |
| Kzo9I | GATC | 1 cut(s) | 417 |
| LpnPI | CCDG | 9 cut(s) | 17, 44, 44, 92, 212, 260, 278, 309, 439 |
| Lsp1109I | GCAGC | 2 cut(s) | 372, 394 |
| LweI | GCATC | 1 cut(s) | 57 |
| MaeI | CTAG | 1 cut(s) | 80 |
| MaeII | ACGT | 1 cut(s) | 438 |
| MaeIII | GTNAC | 1 cut(s) | 439 |
| MalI | GATC | 1 cut(s) | 419 |
| MbiI | CCGCTC | 1 cut(s) | 339 |
| MboI | GATC | 1 cut(s) | 417 |
| MboII | GAAGA | 6 cut(s) | 239, 275, 290, 308, 379, 427 |
| MluCI | AATT | 2 cut(s) | 71, 429 |
| MlyI | GAGTC | 1 cut(s) | 361 |
| MnlI | CCTC | 9 cut(s) | 38, 61, 121, 153, 167, 217, 232, 300, 375 |
| MroI | TCCGGA | 1 cut(s) | 425 |
| MroXI | GAANNNNTTC | 1 cut(s) | 75 |
| MspA1I | CMGCKG | 2 cut(s) | 163, 292 |
| MspI | CCGG | 2 cut(s) | 199, 426 |
| MspR9I | CCNGG | 2 cut(s) | 32, 200 |
| MvaI | CCWGG | 1 cut(s) | 32 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 169 |
| NciI | CCSGG | 1 cut(s) | 200 |
| NdeII | GATC | 1 cut(s) | 417 |
| NlaIII | CATG | 1 cut(s) | 365 |
| NlaIV | GGNNCC | 2 cut(s) | 288, 424 |
| NmeAIII | GCCGAG | 1 cut(s) | 24 |
| NmuCI | GTSAC | 1 cut(s) | 439 |
| PdmI | GAANNNNTTC | 1 cut(s) | 75 |
| PfeI | GAWTC | 3 cut(s) | 218, 271, 313 |
| PkrI | GCNGC | 2 cut(s) | 387, 409 |
| PleI | GAGTC | 1 cut(s) | 360 |
| PpsI | GAGTC | 1 cut(s) | 360 |
| Psp6I | CCWGG | 1 cut(s) | 30 |
| PspGI | CCWGG | 1 cut(s) | 30 |
| PspN4I | GGNNCC | 2 cut(s) | 288, 424 |
| SatI | GCNGC | 2 cut(s) | 386, 408 |
| Sau3AI | GATC | 1 cut(s) | 417 |
| SchI | GAGTC | 1 cut(s) | 361 |
| ScrFI | CCNGG | 2 cut(s) | 32, 200 |
| SetI | ASST | 6 cut(s) | 132, 145, 178, 238, 409, 441 |
| SfaNI | GCATC | 1 cut(s) | 57 |
| SmlI | CTYRAG | 1 cut(s) | 377 |
| SmoI | CTYRAG | 1 cut(s) | 377 |
| Sse9I | AATT | 2 cut(s) | 71, 429 |
| SsiI | CCGC | 4 cut(s) | 97, 163, 290, 339 |
| SspMI | CTAG | 1 cut(s) | 80 |
| StyD4I | CCNGG | 2 cut(s) | 30, 198 |
| TaaI | ACNGT | 4 cut(s) | 12, 286, 373, 445 |
| TaiI | ACGT | 1 cut(s) | 441 |
| TaqI | TCGA | 1 cut(s) | 51 |
| TasI | AATT | 2 cut(s) | 71, 429 |
| TfiI | GAWTC | 3 cut(s) | 218, 271, 313 |
| TscAI | CASTG | 1 cut(s) | 126 |
| TseFI | GTSAC | 1 cut(s) | 439 |
| TseI | GCWGC | 2 cut(s) | 385, 407 |
| Tsp45I | GTSAC | 1 cut(s) | 439 |
| TspDTI | ATGAA | 4 cut(s) | 64, 246, 308, 386 |
| TspRI | CASTG | 1 cut(s) | 126 |
| XapI | RAATTY | 1 cut(s) | 71 |
| XmnI | GAANNNNTTC | 1 cut(s) | 75 |
| XspI | CTAG | 1 cut(s) | 80 |