gag-polypeptide of LTR copia-type
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 495 |
| AccB1I | GGYRCC | 1 cut(s) | 495 |
| AccII | CGCG | 1 cut(s) | 303 |
| AciI | CCGC | 3 cut(s) | 163, 301, 591 |
| AdeI | CACNNNGTG | 1 cut(s) | 159 |
| AfaI | GTAC | 1 cut(s) | 497 |
| AfeI | AGCGCT | 1 cut(s) | 491 |
| AgsI | TTSAA | 3 cut(s) | 90, 338, 587 |
| AjnI | CCWGG | 1 cut(s) | 370 |
| AluBI | AGCT | 4 cut(s) | 96, 101, 122, 143 |
| AluI | AGCT | 4 cut(s) | 96, 101, 122, 143 |
| Alw26I | GTCTC | 2 cut(s) | 191, 536 |
| Ama87I | CYCGRG | 2 cut(s) | 278, 511 |
| Aor51HI | AGCGCT | 1 cut(s) | 491 |
| ApeKI | GCWGC | 3 cut(s) | 317, 350, 593 |
| Asp718I | GGTACC | 1 cut(s) | 495 |
| AspA2I | CCTAGG | 1 cut(s) | 425 |
| AspLEI | GCGC | 1 cut(s) | 492 |
| AspS9I | GGNCC | 1 cut(s) | 517 |
| AsuHPI | GGTGA | 3 cut(s) | 142, 360, 545 |
| AvaI | CYCGRG | 2 cut(s) | 278, 511 |
| AvaII | GGWCC | 1 cut(s) | 517 |
| AvrII | CCTAGG | 1 cut(s) | 425 |
| BanI | GGYRCC | 1 cut(s) | 495 |
| BauI | CACGAG | 1 cut(s) | 188 |
| BbvI | GCAGC | 3 cut(s) | 304, 337, 580 |
| BccI | CCATC | 4 cut(s) | 115, 136, 202, 410 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 309, 343 |
| BciT130I | CCWGG | 1 cut(s) | 372 |
| BciVI | GTATCC | 1 cut(s) | 420 |
| BclI | TGATCA | 1 cut(s) | 147 |
| BcoDI | GTCTC | 2 cut(s) | 191, 536 |
| BfaI | CTAG | 5 cut(s) | 33, 42, 119, 140, 426 |
| BfmI | CTRYAG | 1 cut(s) | 594 |
| BfoI | RGCGCY | 1 cut(s) | 493 |
| BfuI | GTATCC | 1 cut(s) | 420 |
| BisI | GCNGC | 6 cut(s) | 163, 301, 318, 351, 591, 594 |
| BlnI | CCTAGG | 1 cut(s) | 425 |
| BlpI | GCTNAGC | 1 cut(s) | 97 |
| BlsI | GCNGC | 6 cut(s) | 164, 302, 319, 352, 592, 595 |
| Bme1390I | CCNGG | 1 cut(s) | 372 |
| Bme18I | GGWCC | 1 cut(s) | 517 |
| BmeT110I | CYCGRG | 2 cut(s) | 278, 511 |
| BmgT120I | GGNCC | 1 cut(s) | 517 |
| BmiI | GGNNCC | 2 cut(s) | 497, 518 |
| BmrFI | CCNGG | 1 cut(s) | 372 |
| BmrI | ACTGGG | 2 cut(s) | 227, 240 |
| BmsI | GCATC | 4 cut(s) | 61, 329, 439, 629 |
| BmuI | ACTGGG | 2 cut(s) | 227, 240 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 97 |
| BpuEI | CTTGAG | 1 cut(s) | 560 |
| Bsa29I | ATCGAT | 1 cut(s) | 329 |
| BsaI | GGTCTC | 1 cut(s) | 191 |
| BsaJI | CCNNGG | 3 cut(s) | 169, 425, 499 |
| Bse1I | ACTGG | 2 cut(s) | 222, 246 |
| Bse3DI | GCAATG | 1 cut(s) | 260 |
| BseBI | CCWGG | 1 cut(s) | 372 |
| BseCI | ATCGAT | 1 cut(s) | 329 |
| BseDI | CCNNGG | 3 cut(s) | 169, 425, 499 |
| BseGI | GGATG | 3 cut(s) | 107, 128, 430 |
| BseMI | GCAATG | 1 cut(s) | 260 |
| BseNI | ACTGG | 2 cut(s) | 222, 246 |
| BseXI | GCAGC | 3 cut(s) | 304, 337, 580 |
| Bsh1236I | CGCG | 1 cut(s) | 303 |
| BshNI | GGYRCC | 1 cut(s) | 495 |
| BshVI | ATCGAT | 1 cut(s) | 329 |
| BsiHKCI | CYCGRG | 2 cut(s) | 278, 511 |
| BslFI | GGGAC | 3 cut(s) | 281, 530, 590 |
| BsmAI | GTCTC | 2 cut(s) | 191, 536 |
| BsmFI | GGGAC | 3 cut(s) | 281, 530, 590 |
| BsmI | GAATGC | 1 cut(s) | 375 |
| Bso31I | GGTCTC | 1 cut(s) | 191 |
| BsoBI | CYCGRG | 2 cut(s) | 278, 511 |
| Bsp143I | GATC | 1 cut(s) | 147 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 97 |
| BspACI | CCGC | 3 cut(s) | 163, 301, 591 |
| BspDI | ATCGAT | 1 cut(s) | 329 |
| BspFNI | CGCG | 1 cut(s) | 303 |
| BspLI | GGNNCC | 2 cut(s) | 497, 518 |
| BspMAI | CTGCAG | 1 cut(s) | 598 |
| BspT107I | GGYRCC | 1 cut(s) | 495 |
| BspTNI | GGTCTC | 1 cut(s) | 191 |
| BsrDI | GCAATG | 1 cut(s) | 260 |
| BsrI | ACTGG | 2 cut(s) | 222, 246 |
| BssECI | CCNNGG | 3 cut(s) | 169, 425, 499 |
| BssMI | GATC | 1 cut(s) | 147 |
| BssSI | CACGAG | 1 cut(s) | 188 |
| BssT1I | CCWWGG | 3 cut(s) | 169, 425, 499 |
| Bst2BI | CACGAG | 1 cut(s) | 188 |
| Bst2UI | CCWGG | 1 cut(s) | 372 |
| Bst4CI | ACNGT | 3 cut(s) | 202, 210, 547 |
| BstC8I | GCNNGC | 1 cut(s) | 473 |
| BstDEI | CTNAG | 2 cut(s) | 60, 97 |
| BstF5I | GGATG | 3 cut(s) | 107, 128, 430 |
| BstFNI | CGCG | 1 cut(s) | 303 |
| BstH2I | RGCGCY | 1 cut(s) | 493 |
| BstHHI | GCGC | 1 cut(s) | 492 |
| BstKTI | GATC | 1 cut(s) | 150 |
| BstMAI | GTCTC | 2 cut(s) | 191, 536 |
| BstMBI | GATC | 1 cut(s) | 147 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 632 |
| BstNI | CCWGG | 1 cut(s) | 372 |
| BstNSI | RCATGY | 1 cut(s) | 475 |
| BstSCI | CCNGG | 1 cut(s) | 370 |
| BstSFI | CTRYAG | 1 cut(s) | 594 |
| BstUI | CGCG | 1 cut(s) | 303 |
| BstV1I | GCAGC | 3 cut(s) | 304, 337, 580 |
| Bsu15I | ATCGAT | 1 cut(s) | 329 |
| BsuI | GTATCC | 1 cut(s) | 420 |
| BsuTUI | ATCGAT | 1 cut(s) | 329 |
| BtsCI | GGATG | 3 cut(s) | 107, 128, 430 |
| BtsI | GCAGTG | 1 cut(s) | 183 |
| BtsIMutI | CAGTG | 2 cut(s) | 183, 552 |
| Cac8I | GCNNGC | 1 cut(s) | 473 |
| CfoI | GCGC | 1 cut(s) | 492 |
| Cfr13I | GGNCC | 1 cut(s) | 517 |
| ClaI | ATCGAT | 1 cut(s) | 329 |
| Csp6I | GTAC | 1 cut(s) | 496 |
| CviAII | CATG | 3 cut(s) | 380, 472, 627 |
| CviJI | RGCY | 7 cut(s) | 96, 101, 122, 143, 423, 441, 590 |
| CviKI_1 | RGCY | 7 cut(s) | 96, 101, 122, 143, 423, 441, 590 |
| CviQI | GTAC | 1 cut(s) | 496 |
| DdeI | CTNAG | 2 cut(s) | 60, 97 |
| DpnI | GATC | 1 cut(s) | 149 |
| DpnII | GATC | 1 cut(s) | 147 |
| DraIII | CACNNNGTG | 1 cut(s) | 159 |
| Eco130I | CCWWGG | 3 cut(s) | 169, 425, 499 |
| Eco31I | GGTCTC | 1 cut(s) | 191 |
| Eco47I | GGWCC | 1 cut(s) | 517 |
| Eco47III | AGCGCT | 1 cut(s) | 491 |
| Eco88I | CYCGRG | 2 cut(s) | 278, 511 |
| EcoRII | CCWGG | 1 cut(s) | 370 |
| EcoT14I | CCWWGG | 3 cut(s) | 169, 425, 499 |
| ErhI | CCWWGG | 3 cut(s) | 169, 425, 499 |
| FaeI | CATG | 3 cut(s) | 383, 475, 630 |
| FaqI | GGGAC | 3 cut(s) | 281, 530, 590 |
| FatI | CATG | 3 cut(s) | 379, 471, 626 |
| FauNDI | CATATG | 1 cut(s) | 610 |
| FbaI | TGATCA | 1 cut(s) | 147 |
| Fnu4HI | GCNGC | 6 cut(s) | 163, 301, 318, 351, 591, 594 |
| FokI | GGATG | 3 cut(s) | 94, 115, 417 |
| Fsp4HI | GCNGC | 6 cut(s) | 163, 301, 318, 351, 591, 594 |
| FspBI | CTAG | 5 cut(s) | 33, 42, 119, 140, 426 |
| GlaI | GCGC | 1 cut(s) | 491 |
| GluI | GCNGC | 6 cut(s) | 163, 301, 318, 351, 591, 594 |
| HaeII | RGCGCY | 1 cut(s) | 493 |
| HhaI | GCGC | 1 cut(s) | 492 |
| Hin1II | CATG | 3 cut(s) | 383, 475, 630 |
| Hin6I | GCGC | 1 cut(s) | 490 |
| HinP1I | GCGC | 1 cut(s) | 490 |
| HinfI | GANTC | 5 cut(s) | 28, 64, 225, 446, 550 |
| HphI | GGTGA | 3 cut(s) | 142, 360, 545 |
| Hpy188I | TCNGA | 2 cut(s) | 11, 462 |
| Hpy188III | TCNNGA | 3 cut(s) | 68, 450, 572 |
| HpyAV | CCTTC | 1 cut(s) | 176 |
| HpyCH4III | ACNGT | 3 cut(s) | 202, 210, 547 |
| HpyCH4V | TGCA | 7 cut(s) | 24, 74, 320, 361, 475, 596, 626 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 632 |
| HpyF3I | CTNAG | 2 cut(s) | 60, 97 |
| Hsp92II | CATG | 3 cut(s) | 383, 475, 630 |
| HspAI | GCGC | 1 cut(s) | 490 |
| KpnI | GGTACC | 1 cut(s) | 499 |
| Ksp22I | TGATCA | 1 cut(s) | 147 |
| Kzo9I | GATC | 1 cut(s) | 147 |
| LmnI | GCTCC | 2 cut(s) | 93, 173 |
| Lsp1109I | GCAGC | 3 cut(s) | 304, 337, 580 |
| LweI | GCATC | 4 cut(s) | 61, 329, 439, 629 |
| MaeI | CTAG | 5 cut(s) | 33, 42, 119, 140, 426 |
| MaeIII | GTNAC | 1 cut(s) | 366 |
| MalI | GATC | 1 cut(s) | 149 |
| MboI | GATC | 1 cut(s) | 147 |
| MboII | GAAGA | 3 cut(s) | 78, 234, 429 |
| MfeI | CAATTG | 1 cut(s) | 362 |
| MluCI | AATT | 1 cut(s) | 362 |
| MlyI | GAGTC | 1 cut(s) | 37 |
| MmeI | TCCRAC | 1 cut(s) | 17 |
| MnlI | CCTC | 5 cut(s) | 125, 146, 298, 516, 592 |
| MseI | TTAA | 3 cut(s) | 204, 237, 507 |
| MslI | CAYNNNNRTG | 1 cut(s) | 625 |
| MspA1I | CMGCKG | 1 cut(s) | 593 |
| MspR9I | CCNGG | 1 cut(s) | 372 |
| MunI | CAATTG | 1 cut(s) | 362 |
| Mva1269I | GAATGC | 1 cut(s) | 375 |
| MvaI | CCWGG | 1 cut(s) | 372 |
| MvnI | CGCG | 1 cut(s) | 303 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 632 |
| NdeI | CATATG | 1 cut(s) | 610 |
| NdeII | GATC | 1 cut(s) | 147 |
| NlaIII | CATG | 3 cut(s) | 383, 475, 630 |
| NlaIV | GGNNCC | 2 cut(s) | 497, 518 |
| NmuCI | GTSAC | 1 cut(s) | 366 |
| NspI | RCATGY | 1 cut(s) | 475 |
| PaeI | GCATGC | 1 cut(s) | 475 |
| PctI | GAATGC | 1 cut(s) | 375 |
| PfeI | GAWTC | 4 cut(s) | 64, 225, 446, 550 |
| PkrI | GCNGC | 6 cut(s) | 164, 302, 319, 352, 592, 595 |
| PleI | GAGTC | 1 cut(s) | 36 |
| PpsI | GAGTC | 1 cut(s) | 36 |
| Psp6I | CCWGG | 1 cut(s) | 370 |
| PspGI | CCWGG | 1 cut(s) | 370 |
| PspN4I | GGNNCC | 2 cut(s) | 497, 518 |
| PspPI | GGNCC | 1 cut(s) | 517 |
| PstI | CTGCAG | 1 cut(s) | 598 |
| RsaI | GTAC | 1 cut(s) | 497 |
| RsaNI | GTAC | 1 cut(s) | 496 |
| RseI | CAYNNNNRTG | 1 cut(s) | 625 |
| SaqAI | TTAA | 3 cut(s) | 204, 237, 507 |
| SatI | GCNGC | 6 cut(s) | 163, 301, 318, 351, 591, 594 |
| Sau3AI | GATC | 1 cut(s) | 147 |
| Sau96I | GGNCC | 1 cut(s) | 517 |
| SchI | GAGTC | 1 cut(s) | 37 |
| ScrFI | CCNGG | 1 cut(s) | 372 |
| SfaNI | GCATC | 4 cut(s) | 61, 329, 439, 629 |
| SfcI | CTRYAG | 1 cut(s) | 594 |
| SinI | GGWCC | 1 cut(s) | 517 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 625 |
| SmlI | CTYRAG | 1 cut(s) | 539 |
| SmoI | CTYRAG | 1 cut(s) | 539 |
| SphI | GCATGC | 1 cut(s) | 475 |
| Sse9I | AATT | 1 cut(s) | 362 |
| SsiI | CCGC | 3 cut(s) | 163, 301, 591 |
| SspI | AATATT | 1 cut(s) | 456 |
| SspMI | CTAG | 5 cut(s) | 33, 42, 119, 140, 426 |
| StyD4I | CCNGG | 1 cut(s) | 370 |
| StyI | CCWWGG | 3 cut(s) | 169, 425, 499 |
| TaaI | ACNGT | 3 cut(s) | 202, 210, 547 |
| TaqI | TCGA | 1 cut(s) | 329 |
| TasI | AATT | 1 cut(s) | 362 |
| TauI | GCSGC | 3 cut(s) | 165, 303, 593 |
| TfiI | GAWTC | 4 cut(s) | 64, 225, 446, 550 |
| Tru1I | TTAA | 3 cut(s) | 204, 237, 507 |
| Tru9I | TTAA | 3 cut(s) | 204, 237, 507 |
| TscAI | CASTG | 2 cut(s) | 183, 552 |
| TseFI | GTSAC | 1 cut(s) | 366 |
| TseI | GCWGC | 3 cut(s) | 317, 350, 593 |
| Tsp45I | GTSAC | 1 cut(s) | 366 |
| TspDTI | ATGAA | 5 cut(s) | 70, 217, 368, 384, 579 |
| TspRI | CASTG | 2 cut(s) | 183, 552 |
| VpaK11BI | GGWCC | 1 cut(s) | 517 |
| XceI | RCATGY | 1 cut(s) | 475 |
| XmaJI | CCTAGG | 1 cut(s) | 425 |
| XspI | CTAG | 5 cut(s) | 33, 42, 119, 140, 426 |