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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 1205 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 260 |
| AccIII | TCCGGA | 1 cut(s) | 578 |
| AclWI | GGATC | 2 cut(s) | 455, 994 |
| AcsI | RAATTY | 3 cut(s) | 491, 997, 1328 |
| AcuI | CTGAAG | 3 cut(s) | 243, 690, 1155 |
| AfaI | GTAC | 2 cut(s) | 29, 836 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 260, 617 |
| AflII | CTTAAG | 1 cut(s) | 872 |
| AflIII | ACRYGT | 2 cut(s) | 831, 1449 |
| AjnI | CCWGG | 1 cut(s) | 285 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 320, 352 |
| AluBI | AGCT | 8 cut(s) | 64, 108, 221, 395, 628, 893, 974, 1438 |
| AluI | AGCT | 8 cut(s) | 64, 108, 221, 395, 628, 893, 974, 1438 |
| Alw21I | GWGCWC | 2 cut(s) | 397, 1462 |
| Alw26I | GTCTC | 2 cut(s) | 173, 958 |
| Alw44I | GTGCAC | 1 cut(s) | 1458 |
| AlwI | GGATC | 2 cut(s) | 455, 994 |
| Aor13HI | TCCGGA | 1 cut(s) | 578 |
| ApaLI | GTGCAC | 1 cut(s) | 1458 |
| ApeKI | GCWGC | 7 cut(s) | 282, 535, 538, 622, 625, 893, 904 |
| ApoI | RAATTY | 3 cut(s) | 491, 997, 1328 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 83, 115 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1185 |
| AspLEI | GCGC | 1 cut(s) | 1206 |
| AsuHPI | GGTGA | 1 cut(s) | 275 |
| BaeGI | GKGCMC | 1 cut(s) | 1462 |
| BanII | GRGCYC | 1 cut(s) | 397 |
| BbsI | GAAGAC | 4 cut(s) | 735, 1143, 1355, 1452 |
| Bbv12I | GWGCWC | 2 cut(s) | 397, 1462 |
| BbvI | GCAGC | 7 cut(s) | 294, 547, 550, 634, 637, 880, 891 |
| BccI | CCATC | 2 cut(s) | 892, 926 |
| BciT130I | CCWGG | 1 cut(s) | 287 |
| BclI | TGATCA | 1 cut(s) | 1125 |
| BcoDI | GTCTC | 2 cut(s) | 173, 958 |
| BfaI | CTAG | 2 cut(s) | 279, 848 |
| BfmI | CTRYAG | 1 cut(s) | 572 |
| BfrI | CTTAAG | 1 cut(s) | 872 |
| BisI | GCNGC | 7 cut(s) | 283, 536, 539, 623, 626, 894, 905 |
| BlsI | GCNGC | 7 cut(s) | 284, 537, 540, 624, 627, 895, 906 |
| Bme1390I | CCNGG | 1 cut(s) | 287 |
| BmrFI | CCNGG | 1 cut(s) | 287 |
| BmsI | GCATC | 3 cut(s) | 261, 667, 1269 |
| BpiI | GAAGAC | 4 cut(s) | 735, 1143, 1355, 1452 |
| BpmI | CTGGAG | 2 cut(s) | 326, 805 |
| Bpu10I | CCTNAGC | 2 cut(s) | 416, 1157 |
| BsaBI | GATNNNNATC | 2 cut(s) | 606, 883 |
| BsaJI | CCNNGG | 2 cut(s) | 346, 1066 |
| BsaWI | WCCGGW | 1 cut(s) | 578 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 260, 617 |
| Bse1I | ACTGG | 2 cut(s) | 309, 773 |
| Bse3DI | GCAATG | 1 cut(s) | 322 |
| Bse8I | GATNNNNATC | 2 cut(s) | 606, 883 |
| BseAI | TCCGGA | 1 cut(s) | 578 |
| BseBI | CCWGG | 1 cut(s) | 287 |
| BseDI | CCNNGG | 2 cut(s) | 346, 1066 |
| BseJI | GATNNNNATC | 2 cut(s) | 606, 883 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 260, 617 |
| BseMI | GCAATG | 1 cut(s) | 322 |
| BseMII | CTCAG | 3 cut(s) | 519, 606, 779 |
| BseNI | ACTGG | 2 cut(s) | 309, 773 |
| BseRI | GAGGAG | 4 cut(s) | 227, 392, 834, 1333 |
| BseSI | GKGCMC | 1 cut(s) | 1462 |
| BseXI | GCAGC | 7 cut(s) | 294, 547, 550, 634, 637, 880, 891 |
| BsgI | GTGCAG | 1 cut(s) | 554 |
| BsiHKAI | GWGCWC | 2 cut(s) | 397, 1462 |
| BsiSI | CCGG | 1 cut(s) | 579 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 260, 617 |
| BsmAI | GTCTC | 2 cut(s) | 173, 958 |
| BsmBI | CGTCTC | 1 cut(s) | 173 |
| BsmI | GAATGC | 2 cut(s) | 725, 1249 |
| Bsp1286I | GDGCHC | 2 cut(s) | 397, 1462 |
| Bsp13I | TCCGGA | 1 cut(s) | 578 |
| Bsp143I | GATC | 4 cut(s) | 447, 878, 986, 1125 |
| BspCNI | CTCAG | 3 cut(s) | 520, 607, 780 |
| BspEI | TCCGGA | 1 cut(s) | 578 |
| BspHI | TCATGA | 1 cut(s) | 1074 |
| BspPI | GGATC | 2 cut(s) | 455, 994 |
| BspTI | CTTAAG | 1 cut(s) | 872 |
| BsrDI | GCAATG | 1 cut(s) | 322 |
| BsrI | ACTGG | 2 cut(s) | 309, 773 |
| BssECI | CCNNGG | 2 cut(s) | 346, 1066 |
| BssMI | GATC | 4 cut(s) | 447, 878, 986, 1125 |
| BssT1I | CCWWGG | 2 cut(s) | 346, 1066 |
| Bst2UI | CCWGG | 1 cut(s) | 287 |
| Bst4CI | ACNGT | 3 cut(s) | 576, 924, 942 |
| Bst6I | CTCTTC | 6 cut(s) | 18, 132, 186, 225, 437, 741 |
| BstAFI | CTTAAG | 1 cut(s) | 872 |
| BstC8I | GCNNGC | 3 cut(s) | 247, 455, 543 |
| BstDEI | CTNAG | 5 cut(s) | 416, 528, 615, 788, 1157 |
| BstHHI | GCGC | 1 cut(s) | 1206 |
| BstKTI | GATC | 4 cut(s) | 450, 881, 989, 1128 |
| BstMAI | GTCTC | 2 cut(s) | 173, 958 |
| BstMBI | GATC | 4 cut(s) | 447, 878, 986, 1125 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 61 |
| BstNI | CCWGG | 1 cut(s) | 287 |
| BstNSI | RCATGY | 4 cut(s) | 71, 545, 835, 1453 |
| BstSCI | CCNGG | 1 cut(s) | 285 |
| BstSFI | CTRYAG | 1 cut(s) | 572 |
| BstSLI | GKGCMC | 1 cut(s) | 1462 |
| BstV1I | GCAGC | 7 cut(s) | 294, 547, 550, 634, 637, 880, 891 |
| BstV2I | GAAGAC | 4 cut(s) | 735, 1143, 1355, 1452 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1255 |
| BtgZI | GCGATG | 1 cut(s) | 174 |
| BtsI | GCAGTG | 2 cut(s) | 1099, 1272 |
| BtsIMutI | CAGTG | 6 cut(s) | 87, 672, 714, 780, 1099, 1272 |
| Cac8I | GCNNGC | 3 cut(s) | 247, 455, 543 |
| CciI | TCATGA | 1 cut(s) | 1074 |
| CfoI | GCGC | 1 cut(s) | 1206 |
| Csp6I | GTAC | 2 cut(s) | 28, 835 |
| CviAII | CATG | 7 cut(s) | 68, 325, 542, 832, 908, 1075, 1450 |
| CviQI | GTAC | 2 cut(s) | 28, 835 |
| DdeI | CTNAG | 5 cut(s) | 416, 528, 615, 788, 1157 |
| DpnI | GATC | 4 cut(s) | 449, 880, 988, 1127 |
| DpnII | GATC | 4 cut(s) | 447, 878, 986, 1125 |
| DraI | TTTAAA | 1 cut(s) | 360 |
| Eam1104I | CTCTTC | 6 cut(s) | 18, 132, 186, 225, 437, 741 |
| EarI | CTCTTC | 6 cut(s) | 18, 132, 186, 225, 437, 741 |
| Ecl136II | GAGCTC | 1 cut(s) | 395 |
| Eco130I | CCWWGG | 2 cut(s) | 346, 1066 |
| Eco24I | GRGCYC | 1 cut(s) | 397 |
| Eco53kI | GAGCTC | 1 cut(s) | 395 |
| Eco57I | CTGAAG | 3 cut(s) | 243, 690, 1155 |
| EcoICRI | GAGCTC | 1 cut(s) | 395 |
| EcoRII | CCWGG | 1 cut(s) | 285 |
| EcoT14I | CCWWGG | 2 cut(s) | 346, 1066 |
| EcoT38I | GRGCYC | 1 cut(s) | 397 |
| ErhI | CCWWGG | 2 cut(s) | 346, 1066 |
| Esp3I | CGTCTC | 1 cut(s) | 173 |
| FaeI | CATG | 7 cut(s) | 71, 328, 545, 835, 911, 1078, 1453 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 963, 995 |
| FatI | CATG | 7 cut(s) | 67, 324, 541, 831, 907, 1074, 1449 |
| FauNDI | CATATG | 1 cut(s) | 1084 |
| FbaI | TGATCA | 1 cut(s) | 1125 |
| Fnu4HI | GCNGC | 7 cut(s) | 283, 536, 539, 623, 626, 894, 905 |
| FriOI | GRGCYC | 1 cut(s) | 397 |
| Fsp4HI | GCNGC | 7 cut(s) | 283, 536, 539, 623, 626, 894, 905 |
| FspBI | CTAG | 2 cut(s) | 279, 848 |
| FspI | TGCGCA | 1 cut(s) | 1205 |
| GlaI | GCGC | 1 cut(s) | 1205 |
| GluI | GCNGC | 7 cut(s) | 283, 536, 539, 623, 626, 894, 905 |
| GsuI | CTGGAG | 2 cut(s) | 326, 805 |
| HapII | CCGG | 1 cut(s) | 579 |
| HhaI | GCGC | 1 cut(s) | 1206 |
| Hin1II | CATG | 7 cut(s) | 71, 328, 545, 835, 911, 1078, 1453 |
| Hin6I | GCGC | 1 cut(s) | 1204 |
| HinP1I | GCGC | 1 cut(s) | 1204 |
| HinfI | GANTC | 6 cut(s) | 424, 551, 818, 912, 1071, 1186 |
| HpaII | CCGG | 1 cut(s) | 579 |
| HphI | GGTGA | 1 cut(s) | 275 |
| Hpy166II | GTNNAC | 2 cut(s) | 670, 1460 |
| Hpy188I | TCNGA | 2 cut(s) | 60, 556 |
| Hpy188III | TCNNGA | 5 cut(s) | 579, 848, 1075, 1129, 1220 |
| Hpy8I | GTNNAC | 2 cut(s) | 670, 1460 |
| HpyAV | CCTTC | 6 cut(s) | 169, 322, 383, 592, 977, 1165 |
| HpyCH4III | ACNGT | 3 cut(s) | 576, 924, 942 |
| HpyCH4IV | ACGT | 1 cut(s) | 1274 |
| HpyCH4V | TGCA | 9 cut(s) | 44, 535, 545, 680, 896, 907, 1300, 1388, 1460 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 61 |
| HpyF3I | CTNAG | 5 cut(s) | 416, 528, 615, 788, 1157 |
| HpySE526I | ACGT | 1 cut(s) | 1274 |
| Hsp92II | CATG | 7 cut(s) | 71, 328, 545, 835, 911, 1078, 1453 |
| HspAI | GCGC | 1 cut(s) | 1204 |
| Kpn2I | TCCGGA | 1 cut(s) | 578 |
| Ksp22I | TGATCA | 1 cut(s) | 1125 |
| Kzo9I | GATC | 4 cut(s) | 447, 878, 986, 1125 |
| LmnI | GCTCC | 2 cut(s) | 392, 581 |
| LpnPI | CCDG | 9 cut(s) | 272, 290, 299, 592, 786, 835, 975, 1233, 1424 |
| Lsp1109I | GCAGC | 7 cut(s) | 294, 547, 550, 634, 637, 880, 891 |
| LweI | GCATC | 3 cut(s) | 261, 667, 1269 |
| MaeI | CTAG | 2 cut(s) | 279, 848 |
| MaeII | ACGT | 1 cut(s) | 1274 |
| MaeIII | GTNAC | 1 cut(s) | 1267 |
| MalI | GATC | 4 cut(s) | 449, 880, 988, 1127 |
| MboI | GATC | 4 cut(s) | 447, 878, 986, 1125 |
| MhlI | GDGCHC | 2 cut(s) | 397, 1462 |
| MluCI | AATT | 6 cut(s) | 382, 491, 639, 997, 1328, 1474 |
| MlyI | GAGTC | 2 cut(s) | 812, 921 |
| MmeI | TCCRAC | 2 cut(s) | 60, 318 |
| MroI | TCCGGA | 1 cut(s) | 578 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1185 |
| MseI | TTAA | 3 cut(s) | 359, 873, 1433 |
| MspCI | CTTAAG | 1 cut(s) | 872 |
| MspI | CCGG | 1 cut(s) | 579 |
| MspR9I | CCNGG | 1 cut(s) | 287 |
| Mva1269I | GAATGC | 2 cut(s) | 725, 1249 |
| MvaI | CCWGG | 1 cut(s) | 287 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 61 |
| NdeI | CATATG | 1 cut(s) | 1084 |
| NdeII | GATC | 4 cut(s) | 447, 878, 986, 1125 |
| NlaIII | CATG | 7 cut(s) | 71, 328, 545, 835, 911, 1078, 1453 |
| NmuCI | GTSAC | 1 cut(s) | 1267 |
| NsbI | TGCGCA | 1 cut(s) | 1205 |
| NspI | RCATGY | 4 cut(s) | 71, 545, 835, 1453 |
| PaeI | GCATGC | 1 cut(s) | 545 |
| PagI | TCATGA | 1 cut(s) | 1074 |
| PciI | ACATGT | 2 cut(s) | 831, 1449 |
| PctI | GAATGC | 2 cut(s) | 725, 1249 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1185 |
| PfeI | GAWTC | 4 cut(s) | 424, 551, 1071, 1186 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 260 |
| PkrI | GCNGC | 7 cut(s) | 284, 537, 540, 624, 627, 895, 906 |
| PleI | GAGTC | 2 cut(s) | 812, 920 |
| PpsI | GAGTC | 2 cut(s) | 812, 920 |
| PscI | ACATGT | 2 cut(s) | 831, 1449 |
| Psp124BI | GAGCTC | 1 cut(s) | 397 |
| Psp6I | CCWGG | 1 cut(s) | 285 |
| PspGI | CCWGG | 1 cut(s) | 285 |
| RsaI | GTAC | 2 cut(s) | 29, 836 |
| RsaNI | GTAC | 2 cut(s) | 28, 835 |
| SacI | GAGCTC | 1 cut(s) | 397 |
| SaqAI | TTAA | 3 cut(s) | 359, 873, 1433 |
| SatI | GCNGC | 7 cut(s) | 283, 536, 539, 623, 626, 894, 905 |
| Sau3AI | GATC | 4 cut(s) | 447, 878, 986, 1125 |
| SchI | GAGTC | 2 cut(s) | 812, 921 |
| ScrFI | CCNGG | 1 cut(s) | 287 |
| SduI | GDGCHC | 2 cut(s) | 397, 1462 |
| SfaNI | GCATC | 3 cut(s) | 261, 667, 1269 |
| SfcI | CTRYAG | 1 cut(s) | 572 |
| SmlI | CTYRAG | 1 cut(s) | 872 |
| SmoI | CTYRAG | 1 cut(s) | 872 |
| SphI | GCATGC | 1 cut(s) | 545 |
| Sse9I | AATT | 6 cut(s) | 382, 491, 639, 997, 1328, 1474 |
| SspMI | CTAG | 2 cut(s) | 279, 848 |
| SstI | GAGCTC | 1 cut(s) | 397 |
| StyD4I | CCNGG | 1 cut(s) | 285 |
| StyI | CCWWGG | 2 cut(s) | 346, 1066 |
| TaaI | ACNGT | 3 cut(s) | 576, 924, 942 |
| TaiI | ACGT | 1 cut(s) | 1277 |
| TaqI | TCGA | 1 cut(s) | 460 |
| TaqII | GACCGA | 1 cut(s) | 701 |
| TasI | AATT | 6 cut(s) | 382, 491, 639, 997, 1328, 1474 |
| TatI | WGTACW | 1 cut(s) | 27 |
| TfiI | GAWTC | 4 cut(s) | 424, 551, 1071, 1186 |
| Tru1I | TTAA | 3 cut(s) | 359, 873, 1433 |
| Tru9I | TTAA | 3 cut(s) | 359, 873, 1433 |
| TscAI | CASTG | 6 cut(s) | 94, 679, 714, 780, 1106, 1272 |
| TseFI | GTSAC | 1 cut(s) | 1267 |
| TseI | GCWGC | 7 cut(s) | 282, 535, 538, 622, 625, 893, 904 |
| Tsp45I | GTSAC | 1 cut(s) | 1267 |
| TspGWI | ACGGA | 1 cut(s) | 197 |
| TspRI | CASTG | 6 cut(s) | 94, 679, 714, 780, 1106, 1272 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 260 |
| Vha464I | CTTAAG | 1 cut(s) | 872 |
| VneI | GTGCAC | 1 cut(s) | 1458 |
| XapI | RAATTY | 3 cut(s) | 491, 997, 1328 |
| XbaI | TCTAGA | 1 cut(s) | 847 |
| XceI | RCATGY | 4 cut(s) | 71, 545, 835, 1453 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1185 |
| XspI | CTAG | 2 cut(s) | 279, 848 |