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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 584 |
| AatII | GACGTC | 1 cut(s) | 162 |
| AccB1I | GGYRCC | 1 cut(s) | 894 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 884 |
| AciI | CCGC | 1 cut(s) | 608 |
| AcsI | RAATTY | 2 cut(s) | 502, 682 |
| AcyI | GRCGYC | 1 cut(s) | 159 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 15, 400, 884, 915 |
| AgsI | TTSAA | 3 cut(s) | 49, 373, 1036 |
| AluBI | AGCT | 6 cut(s) | 221, 262, 629, 709, 853, 1063 |
| AluI | AGCT | 6 cut(s) | 221, 262, 629, 709, 853, 1063 |
| Alw21I | GWGCWC | 1 cut(s) | 358 |
| Alw26I | GTCTC | 1 cut(s) | 1001 |
| Alw44I | GTGCAC | 1 cut(s) | 354 |
| ApaLI | GTGCAC | 1 cut(s) | 354 |
| ApeKI | GCWGC | 1 cut(s) | 709 |
| ApoI | RAATTY | 2 cut(s) | 502, 682 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 296, 328 |
| AsuC2I | CCSGG | 1 cut(s) | 65 |
| AsuNHI | GCTAGC | 1 cut(s) | 1063 |
| AxyI | CCTNAGG | 1 cut(s) | 454 |
| BaeGI | GKGCMC | 1 cut(s) | 358 |
| BanI | GGYRCC | 1 cut(s) | 894 |
| BauI | CACGAG | 1 cut(s) | 207 |
| BbsI | GAAGAC | 5 cut(s) | 73, 582, 641, 786, 870 |
| Bbv12I | GWGCWC | 1 cut(s) | 358 |
| BbvCI | CCTCAGC | 1 cut(s) | 854 |
| BbvI | GCAGC | 1 cut(s) | 696 |
| BccI | CCATC | 3 cut(s) | 552, 637, 687 |
| BceAI | ACGGC | 1 cut(s) | 932 |
| BciVI | GTATCC | 2 cut(s) | 186, 445 |
| BclI | TGATCA | 1 cut(s) | 21 |
| BcnI | CCSGG | 1 cut(s) | 65 |
| BcoDI | GTCTC | 1 cut(s) | 1001 |
| BfaI | CTAG | 1 cut(s) | 1064 |
| BfuI | GTATCC | 2 cut(s) | 186, 445 |
| BisI | GCNGC | 2 cut(s) | 608, 710 |
| BlsI | GCNGC | 2 cut(s) | 609, 711 |
| Bme1390I | CCNGG | 1 cut(s) | 65 |
| BmiI | GGNNCC | 1 cut(s) | 896 |
| BmrFI | CCNGG | 1 cut(s) | 65 |
| BmsI | GCATC | 2 cut(s) | 416, 839 |
| BmtI | GCTAGC | 1 cut(s) | 1067 |
| BpiI | GAAGAC | 5 cut(s) | 73, 582, 641, 786, 870 |
| Bpu10I | CCTNAGC | 1 cut(s) | 854 |
| BpuEI | CTTGAG | 1 cut(s) | 1008 |
| BpuMI | CCSGG | 1 cut(s) | 65 |
| Bsa29I | ATCGAT | 1 cut(s) | 348 |
| BsaHI | GRCGYC | 1 cut(s) | 159 |
| BsaJI | CCNNGG | 2 cut(s) | 229, 531 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 15, 400, 884, 915 |
| Bse21I | CCTNAGG | 1 cut(s) | 454 |
| Bse3DI | GCAATG | 1 cut(s) | 801 |
| BseCI | ATCGAT | 1 cut(s) | 348 |
| BseDI | CCNNGG | 2 cut(s) | 229, 531 |
| BseGI | GGATG | 2 cut(s) | 24, 303 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 15, 400, 884, 915 |
| BseMI | GCAATG | 1 cut(s) | 801 |
| BseMII | CTCAG | 4 cut(s) | 468, 621, 845, 1001 |
| BseRI | GAGGAG | 2 cut(s) | 663, 837 |
| BseSI | GKGCMC | 1 cut(s) | 358 |
| BseXI | GCAGC | 1 cut(s) | 696 |
| BsgI | GTGCAG | 3 cut(s) | 433, 533, 695 |
| BshNI | GGYRCC | 1 cut(s) | 894 |
| BshVI | ATCGAT | 1 cut(s) | 348 |
| BsiHKAI | GWGCWC | 1 cut(s) | 358 |
| BsiSI | CCGG | 1 cut(s) | 64 |
| BslFI | GGGAC | 1 cut(s) | 377 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 15, 400, 884, 915 |
| BsmAI | GTCTC | 1 cut(s) | 1001 |
| BsmFI | GGGAC | 1 cut(s) | 377 |
| BsmI | GAATGC | 2 cut(s) | 116, 240 |
| Bsp1286I | GDGCHC | 1 cut(s) | 358 |
| Bsp143I | GATC | 4 cut(s) | 21, 69, 300, 345 |
| BspACI | CCGC | 1 cut(s) | 608 |
| BspCNI | CTCAG | 4 cut(s) | 467, 622, 846, 1000 |
| BspDI | ATCGAT | 1 cut(s) | 348 |
| BspHI | TCATGA | 1 cut(s) | 420 |
| BspLI | GGNNCC | 1 cut(s) | 896 |
| BspOI | GCTAGC | 1 cut(s) | 1067 |
| BspQI | GCTCTTC | 1 cut(s) | 843 |
| BspT107I | GGYRCC | 1 cut(s) | 894 |
| BsrDI | GCAATG | 1 cut(s) | 801 |
| BssECI | CCNNGG | 2 cut(s) | 229, 531 |
| BssMI | GATC | 4 cut(s) | 21, 69, 300, 345 |
| BssNI | GRCGYC | 1 cut(s) | 159 |
| BssSI | CACGAG | 1 cut(s) | 207 |
| BssT1I | CCWWGG | 2 cut(s) | 229, 531 |
| Bst2BI | CACGAG | 1 cut(s) | 207 |
| Bst6I | CTCTTC | 2 cut(s) | 843, 1044 |
| BstACI | GRCGYC | 1 cut(s) | 159 |
| BstC8I | GCNNGC | 1 cut(s) | 1065 |
| BstDEI | CTNAG | 5 cut(s) | 454, 560, 630, 854, 987 |
| BstF5I | GGATG | 2 cut(s) | 24, 303 |
| BstKTI | GATC | 4 cut(s) | 24, 72, 303, 348 |
| BstMAI | GTCTC | 1 cut(s) | 1001 |
| BstMBI | GATC | 4 cut(s) | 21, 69, 300, 345 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 268, 1069 |
| BstSCI | CCNGG | 1 cut(s) | 63 |
| BstSLI | GKGCMC | 1 cut(s) | 358 |
| BstV1I | GCAGC | 1 cut(s) | 696 |
| BstV2I | GAAGAC | 5 cut(s) | 73, 582, 641, 786, 870 |
| Bsu15I | ATCGAT | 1 cut(s) | 348 |
| Bsu36I | CCTNAGG | 1 cut(s) | 454 |
| BsuI | GTATCC | 2 cut(s) | 186, 445 |
| BsuTUI | ATCGAT | 1 cut(s) | 348 |
| BtgZI | GCGATG | 1 cut(s) | 356 |
| BtsCI | GGATG | 2 cut(s) | 24, 303 |
| Cac8I | GCNNGC | 1 cut(s) | 1065 |
| CciI | TCATGA | 1 cut(s) | 420 |
| ClaI | ATCGAT | 1 cut(s) | 348 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 384, 419 |
| CviAII | CATG | 5 cut(s) | 421, 471, 522, 616, 800 |
| CviJI | RGCY | 8 cut(s) | 221, 262, 283, 629, 709, 853, 966, 1063 |
| CviKI_1 | RGCY | 8 cut(s) | 221, 262, 283, 629, 709, 853, 966, 1063 |
| DdeI | CTNAG | 5 cut(s) | 454, 560, 630, 854, 987 |
| DpnI | GATC | 4 cut(s) | 23, 71, 302, 347 |
| DpnII | GATC | 4 cut(s) | 21, 69, 300, 345 |
| DraI | TTTAAA | 1 cut(s) | 99 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 584 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 584 |
| Eam1104I | CTCTTC | 2 cut(s) | 843, 1044 |
| EarI | CTCTTC | 2 cut(s) | 843, 1044 |
| Eco130I | CCWWGG | 2 cut(s) | 229, 531 |
| Eco81I | CCTNAGG | 1 cut(s) | 454 |
| EcoRI | GAATTC | 1 cut(s) | 502 |
| EcoT14I | CCWWGG | 2 cut(s) | 229, 531 |
| EcoT22I | ATGCAT | 1 cut(s) | 801 |
| ErhI | CCWWGG | 2 cut(s) | 229, 531 |
| FaeI | CATG | 5 cut(s) | 424, 474, 525, 619, 803 |
| FaiI | YATR | 9 cut(s) | 74, 138, 154, 422, 472, 523, 617, 689, 801 |
| FaqI | GGGAC | 1 cut(s) | 377 |
| FatI | CATG | 5 cut(s) | 420, 470, 521, 615, 799 |
| FbaI | TGATCA | 1 cut(s) | 21 |
| Fnu4HI | GCNGC | 2 cut(s) | 608, 710 |
| FokI | GGATG | 2 cut(s) | 31, 310 |
| Fsp4HI | GCNGC | 2 cut(s) | 608, 710 |
| FspBI | CTAG | 1 cut(s) | 1064 |
| GluI | GCNGC | 2 cut(s) | 608, 710 |
| HapII | CCGG | 1 cut(s) | 64 |
| Hin1I | GRCGYC | 1 cut(s) | 159 |
| Hin1II | CATG | 5 cut(s) | 424, 474, 525, 619, 803 |
| HincII | GTYRAC | 1 cut(s) | 1044 |
| HindII | GTYRAC | 1 cut(s) | 1044 |
| HinfI | GANTC | 7 cut(s) | 249, 292, 365, 385, 424, 839, 994 |
| HpaII | CCGG | 1 cut(s) | 64 |
| Hpy166II | GTNNAC | 2 cut(s) | 356, 1044 |
| Hpy188I | TCNGA | 6 cut(s) | 168, 297, 809, 835, 942, 990 |
| Hpy188III | TCNNGA | 6 cut(s) | 29, 148, 209, 421, 658, 1025 |
| Hpy8I | GTNNAC | 2 cut(s) | 356, 1044 |
| Hpy99I | CGWCG | 2 cut(s) | 161, 516 |
| HpyAV | CCTTC | 3 cut(s) | 239, 448, 946 |
| HpyCH4IV | ACGT | 1 cut(s) | 159 |
| HpyCH4V | TGCA | 7 cut(s) | 114, 323, 356, 450, 550, 712, 799 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 268, 1069 |
| HpyF3I | CTNAG | 5 cut(s) | 454, 560, 630, 854, 987 |
| HpySE526I | ACGT | 1 cut(s) | 159 |
| Hsp92I | GRCGYC | 1 cut(s) | 159 |
| Hsp92II | CATG | 5 cut(s) | 424, 474, 525, 619, 803 |
| Ksp22I | TGATCA | 1 cut(s) | 21 |
| Kzo9I | GATC | 4 cut(s) | 21, 69, 300, 345 |
| LguI | GCTCTTC | 1 cut(s) | 843 |
| LmnI | GCTCC | 1 cut(s) | 650 |
| LpnPI | CCDG | 7 cut(s) | 42, 77, 441, 557, 582, 911, 1028 |
| Lsp1109I | GCAGC | 1 cut(s) | 696 |
| LweI | GCATC | 2 cut(s) | 416, 839 |
| MaeI | CTAG | 1 cut(s) | 1064 |
| MaeII | ACGT | 1 cut(s) | 159 |
| MaeIII | GTNAC | 4 cut(s) | 250, 331, 696, 871 |
| MalI | GATC | 4 cut(s) | 23, 71, 302, 347 |
| MboI | GATC | 4 cut(s) | 21, 69, 300, 345 |
| MhlI | GDGCHC | 1 cut(s) | 358 |
| MluCI | AATT | 5 cut(s) | 486, 502, 589, 668, 682 |
| MlyI | GAGTC | 2 cut(s) | 258, 1003 |
| MmeI | TCCRAC | 2 cut(s) | 902, 951 |
| Mph1103I | ATGCAT | 1 cut(s) | 801 |
| MseI | TTAA | 2 cut(s) | 98, 959 |
| MslI | CAYNNNNRTG | 1 cut(s) | 469 |
| MspI | CCGG | 1 cut(s) | 64 |
| MspR9I | CCNGG | 1 cut(s) | 65 |
| Mva1269I | GAATGC | 2 cut(s) | 116, 240 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 268, 1069 |
| NciI | CCSGG | 1 cut(s) | 65 |
| NdeII | GATC | 4 cut(s) | 21, 69, 300, 345 |
| NheI | GCTAGC | 1 cut(s) | 1063 |
| NlaIII | CATG | 5 cut(s) | 424, 474, 525, 619, 803 |
| NlaIV | GGNNCC | 1 cut(s) | 896 |
| NmuCI | GTSAC | 3 cut(s) | 250, 331, 696 |
| NsiI | ATGCAT | 1 cut(s) | 801 |
| PagI | TCATGA | 1 cut(s) | 420 |
| PciSI | GCTCTTC | 1 cut(s) | 843 |
| PctI | GAATGC | 2 cut(s) | 116, 240 |
| PfeI | GAWTC | 5 cut(s) | 292, 365, 385, 424, 839 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 884 |
| PfoI | TCCNGGA | 1 cut(s) | 63 |
| PkrI | GCNGC | 2 cut(s) | 609, 711 |
| PleI | GAGTC | 2 cut(s) | 257, 1002 |
| PpsI | GAGTC | 2 cut(s) | 257, 1002 |
| PspN4I | GGNNCC | 1 cut(s) | 896 |
| RseI | CAYNNNNRTG | 1 cut(s) | 469 |
| SapI | GCTCTTC | 1 cut(s) | 843 |
| SaqAI | TTAA | 2 cut(s) | 98, 959 |
| SatI | GCNGC | 2 cut(s) | 608, 710 |
| Sau3AI | GATC | 4 cut(s) | 21, 69, 300, 345 |
| SchI | GAGTC | 2 cut(s) | 258, 1003 |
| ScrFI | CCNGG | 1 cut(s) | 65 |
| SduI | GDGCHC | 1 cut(s) | 358 |
| SfaNI | GCATC | 2 cut(s) | 416, 839 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 469 |
| SmlI | CTYRAG | 1 cut(s) | 1023 |
| SmoI | CTYRAG | 1 cut(s) | 1023 |
| Sse9I | AATT | 5 cut(s) | 486, 502, 589, 668, 682 |
| SsiI | CCGC | 1 cut(s) | 608 |
| SspMI | CTAG | 1 cut(s) | 1064 |
| StyD4I | CCNGG | 1 cut(s) | 63 |
| StyI | CCWWGG | 2 cut(s) | 229, 531 |
| TaiI | ACGT | 1 cut(s) | 162 |
| TaqI | TCGA | 3 cut(s) | 258, 303, 348 |
| TaqII | GACCGA | 1 cut(s) | 777 |
| TasI | AATT | 5 cut(s) | 486, 502, 589, 668, 682 |
| TauI | GCSGC | 1 cut(s) | 610 |
| TfiI | GAWTC | 5 cut(s) | 292, 365, 385, 424, 839 |
| Tru1I | TTAA | 2 cut(s) | 98, 959 |
| Tru9I | TTAA | 2 cut(s) | 98, 959 |
| TseFI | GTSAC | 3 cut(s) | 250, 331, 696 |
| TseI | GCWGC | 1 cut(s) | 709 |
| Tsp45I | GTSAC | 3 cut(s) | 250, 331, 696 |
| TspDTI | ATGAA | 9 cut(s) | 17, 123, 125, 437, 510, 676, 681, 965, 1071 |
| TspGWI | ACGGA | 2 cut(s) | 105, 1061 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 884 |
| VneI | GTGCAC | 1 cut(s) | 354 |
| XapI | RAATTY | 2 cut(s) | 502, 682 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 551 |
| XspI | CTAG | 1 cut(s) | 1064 |
| ZraI | GACGTC | 1 cut(s) | 160 |
| Zsp2I | ATGCAT | 1 cut(s) | 801 |