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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 970 |
| Acc16I | TGCGCA | 1 cut(s) | 157 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 557 |
| AciI | CCGC | 1 cut(s) | 101 |
| AclWI | GGATC | 3 cut(s) | 81, 740, 1056 |
| AcsI | RAATTY | 1 cut(s) | 776 |
| AcvI | CACGTG | 1 cut(s) | 869 |
| AfaI | GTAC | 2 cut(s) | 227, 337 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 557 |
| AflIII | ACRYGT | 1 cut(s) | 294 |
| AgeI | ACCGGT | 1 cut(s) | 965 |
| AgsI | TTSAA | 8 cut(s) | 19, 211, 220, 383, 713, 724, 782, 1045 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 605, 637 |
| AluBI | AGCT | 6 cut(s) | 74, 372, 515, 907, 1024, 1037 |
| AluI | AGCT | 6 cut(s) | 74, 372, 515, 907, 1024, 1037 |
| Alw21I | GWGCWC | 2 cut(s) | 682, 868 |
| Alw26I | GTCTC | 2 cut(s) | 467, 1021 |
| AlwI | GGATC | 3 cut(s) | 81, 740, 1056 |
| ApeKI | GCWGC | 5 cut(s) | 568, 819, 822, 901, 904 |
| ApoI | RAATTY | 1 cut(s) | 776 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 392, 424 |
| AsiGI | ACCGGT | 1 cut(s) | 965 |
| AspLEI | GCGC | 1 cut(s) | 158 |
| AspS9I | GGNCC | 1 cut(s) | 963 |
| AsuHPI | GGTGA | 2 cut(s) | 437, 572 |
| AsuNHI | GCTAGC | 1 cut(s) | 269 |
| AvaII | GGWCC | 1 cut(s) | 963 |
| BbrPI | CACGTG | 1 cut(s) | 869 |
| Bbv12I | GWGCWC | 2 cut(s) | 682, 868 |
| BbvCI | CCTCAGC | 1 cut(s) | 701 |
| BbvI | GCAGC | 5 cut(s) | 580, 831, 834, 913, 916 |
| BccI | CCATC | 1 cut(s) | 989 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 818, 852 |
| BclI | TGATCA | 1 cut(s) | 3 |
| BcoDI | GTCTC | 2 cut(s) | 467, 1021 |
| BfaI | CTAG | 1 cut(s) | 270 |
| BisI | GCNGC | 5 cut(s) | 569, 820, 823, 902, 905 |
| BlsI | GCNGC | 5 cut(s) | 570, 821, 824, 903, 906 |
| Bme18I | GGWCC | 1 cut(s) | 963 |
| BmgT120I | GGNCC | 1 cut(s) | 963 |
| BmiI | GGNNCC | 1 cut(s) | 182 |
| BmsI | GCATC | 4 cut(s) | 167, 241, 300, 946 |
| BmtI | GCTAGC | 1 cut(s) | 273 |
| BpmI | CTGGAG | 1 cut(s) | 611 |
| Bpu10I | CCTNAGC | 1 cut(s) | 701 |
| BpuEI | CTTGAG | 1 cut(s) | 148 |
| BsaAI | YACGTR | 1 cut(s) | 869 |
| BsaBI | GATNNNNATC | 1 cut(s) | 887 |
| BsaWI | WCCGGW | 2 cut(s) | 965, 974 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 557 |
| Bse118I | RCCGGY | 1 cut(s) | 965 |
| Bse1I | ACTGG | 1 cut(s) | 594 |
| Bse3DI | GCAATG | 1 cut(s) | 607 |
| Bse8I | GATNNNNATC | 1 cut(s) | 887 |
| BseGI | GGATG | 9 cut(s) | 109, 315, 496, 538, 775, 799, 846, 888, 1000 |
| BseJI | GATNNNNATC | 1 cut(s) | 887 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 557 |
| BseMI | GCAATG | 1 cut(s) | 607 |
| BseMII | CTCAG | 1 cut(s) | 692 |
| BseNI | ACTGG | 1 cut(s) | 594 |
| BseRI | GAGGAG | 4 cut(s) | 485, 521, 677, 718 |
| BseXI | GCAGC | 5 cut(s) | 580, 831, 834, 913, 916 |
| BsgI | GTGCAG | 1 cut(s) | 838 |
| Bsh1285I | CGRYCG | 1 cut(s) | 31 |
| BshTI | ACCGGT | 1 cut(s) | 965 |
| BsiEI | CGRYCG | 1 cut(s) | 31 |
| BsiHKAI | GWGCWC | 2 cut(s) | 682, 868 |
| BsiSI | CCGG | 3 cut(s) | 572, 966, 975 |
| BslFI | GGGAC | 1 cut(s) | 177 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 557 |
| BsmAI | GTCTC | 2 cut(s) | 467, 1021 |
| BsmFI | GGGAC | 1 cut(s) | 177 |
| Bsp1286I | GDGCHC | 2 cut(s) | 682, 868 |
| Bsp143I | GATC | 6 cut(s) | 3, 28, 86, 123, 732, 1048 |
| BspACI | CCGC | 1 cut(s) | 101 |
| BspCNI | CTCAG | 1 cut(s) | 693 |
| BspLI | GGNNCC | 1 cut(s) | 182 |
| BspOI | GCTAGC | 1 cut(s) | 273 |
| BspPI | GGATC | 3 cut(s) | 81, 740, 1056 |
| BspQI | GCTCTTC | 1 cut(s) | 81 |
| BsrDI | GCAATG | 1 cut(s) | 607 |
| BsrFI | RCCGGY | 1 cut(s) | 965 |
| BsrI | ACTGG | 1 cut(s) | 594 |
| BssAI | RCCGGY | 1 cut(s) | 965 |
| BssMI | GATC | 6 cut(s) | 3, 28, 86, 123, 732, 1048 |
| Bst4CI | ACNGT | 4 cut(s) | 425, 860, 987, 1005 |
| Bst6I | CTCTTC | 5 cut(s) | 81, 326, 426, 480, 722 |
| BstBAI | YACGTR | 1 cut(s) | 869 |
| BstC8I | GCNNGC | 5 cut(s) | 271, 544, 740, 827, 1039 |
| BstDEI | CTNAG | 2 cut(s) | 148, 701 |
| BstF5I | GGATG | 9 cut(s) | 109, 315, 496, 538, 775, 799, 846, 888, 1000 |
| BstHHI | GCGC | 1 cut(s) | 158 |
| BstKTI | GATC | 6 cut(s) | 6, 31, 89, 126, 735, 1051 |
| BstMAI | GTCTC | 2 cut(s) | 467, 1021 |
| BstMBI | GATC | 6 cut(s) | 3, 28, 86, 123, 732, 1048 |
| BstMCI | CGRYCG | 1 cut(s) | 31 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 369, 901 |
| BstNSI | RCATGY | 4 cut(s) | 298, 342, 379, 829 |
| BstV1I | GCAGC | 5 cut(s) | 580, 831, 834, 913, 916 |
| BtgZI | GCGATG | 1 cut(s) | 468 |
| BtsCI | GGATG | 9 cut(s) | 109, 315, 496, 538, 775, 799, 846, 888, 1000 |
| Cac8I | GCNNGC | 5 cut(s) | 271, 544, 740, 827, 1039 |
| CfoI | GCGC | 1 cut(s) | 158 |
| Cfr10I | RCCGGY | 1 cut(s) | 965 |
| Cfr13I | GGNCC | 1 cut(s) | 963 |
| CpoI | CGGWCCG | 1 cut(s) | 963 |
| Csp6I | GTAC | 2 cut(s) | 226, 336 |
| CspAI | ACCGGT | 1 cut(s) | 965 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 841, 876 |
| CspI | CGGWCCG | 1 cut(s) | 963 |
| CviAII | CATG | 6 cut(s) | 177, 295, 339, 376, 610, 826 |
| CviQI | GTAC | 2 cut(s) | 226, 336 |
| DdeI | CTNAG | 2 cut(s) | 148, 701 |
| DpnI | GATC | 6 cut(s) | 5, 30, 88, 125, 734, 1050 |
| DpnII | GATC | 6 cut(s) | 3, 28, 86, 123, 732, 1048 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 970 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 970 |
| Eam1104I | CTCTTC | 5 cut(s) | 81, 326, 426, 480, 722 |
| EarI | CTCTTC | 5 cut(s) | 81, 326, 426, 480, 722 |
| Eco47I | GGWCC | 1 cut(s) | 963 |
| Eco72I | CACGTG | 1 cut(s) | 869 |
| FaeI | CATG | 6 cut(s) | 180, 298, 342, 379, 613, 829 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 63, 95 |
| FaqI | GGGAC | 1 cut(s) | 177 |
| FatI | CATG | 6 cut(s) | 176, 294, 338, 375, 609, 825 |
| FbaI | TGATCA | 1 cut(s) | 3 |
| Fnu4HI | GCNGC | 5 cut(s) | 569, 820, 823, 902, 905 |
| FokI | GGATG | 9 cut(s) | 116, 322, 503, 545, 782, 806, 853, 895, 1007 |
| Fsp4HI | GCNGC | 5 cut(s) | 569, 820, 823, 902, 905 |
| FspAI | RTGCGCAY | 1 cut(s) | 157 |
| FspBI | CTAG | 1 cut(s) | 270 |
| FspI | TGCGCA | 1 cut(s) | 157 |
| GlaI | GCGC | 1 cut(s) | 157 |
| GluI | GCNGC | 5 cut(s) | 569, 820, 823, 902, 905 |
| GsuI | CTGGAG | 1 cut(s) | 611 |
| HapII | CCGG | 3 cut(s) | 572, 966, 975 |
| HhaI | GCGC | 1 cut(s) | 158 |
| Hin1II | CATG | 6 cut(s) | 180, 298, 342, 379, 613, 829 |
| Hin6I | GCGC | 1 cut(s) | 156 |
| HinP1I | GCGC | 1 cut(s) | 156 |
| HinfI | GANTC | 2 cut(s) | 709, 835 |
| HpaII | CCGG | 3 cut(s) | 572, 966, 975 |
| HphI | GGTGA | 2 cut(s) | 437, 572 |
| Hpy166II | GTNNAC | 1 cut(s) | 949 |
| Hpy188I | TCNGA | 3 cut(s) | 205, 368, 840 |
| Hpy188III | TCNNGA | 3 cut(s) | 127, 162, 307 |
| Hpy8I | GTNNAC | 1 cut(s) | 949 |
| HpyAV | CCTTC | 4 cut(s) | 518, 607, 873, 1039 |
| HpyCH4III | ACNGT | 4 cut(s) | 425, 860, 987, 1005 |
| HpyCH4IV | ACGT | 1 cut(s) | 868 |
| HpyCH4V | TGCA | 7 cut(s) | 62, 176, 300, 352, 819, 829, 959 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 369, 901 |
| HpyF3I | CTNAG | 2 cut(s) | 148, 701 |
| HpySE526I | ACGT | 1 cut(s) | 868 |
| Hsp92II | CATG | 6 cut(s) | 180, 298, 342, 379, 613, 829 |
| HspAI | GCGC | 1 cut(s) | 156 |
| Ksp22I | TGATCA | 1 cut(s) | 3 |
| Kzo9I | GATC | 6 cut(s) | 3, 28, 86, 123, 732, 1048 |
| LguI | GCTCTTC | 1 cut(s) | 81 |
| LmnI | GCTCC | 1 cut(s) | 863 |
| LpnPI | CCDG | 5 cut(s) | 575, 585, 905, 979, 988 |
| Lsp1109I | GCAGC | 5 cut(s) | 580, 831, 834, 913, 916 |
| LweI | GCATC | 4 cut(s) | 167, 241, 300, 946 |
| MaeI | CTAG | 1 cut(s) | 270 |
| MaeII | ACGT | 1 cut(s) | 868 |
| MalI | GATC | 6 cut(s) | 5, 30, 88, 125, 734, 1050 |
| MboI | GATC | 6 cut(s) | 3, 28, 86, 123, 732, 1048 |
| MfeI | CAATTG | 1 cut(s) | 229 |
| MhlI | GDGCHC | 2 cut(s) | 682, 868 |
| MluCI | AATT | 5 cut(s) | 229, 667, 719, 776, 918 |
| MmeI | TCCRAC | 2 cut(s) | 368, 603 |
| MseI | TTAA | 2 cut(s) | 81, 644 |
| MslI | CAYNNNNRTG | 2 cut(s) | 175, 500 |
| MspI | CCGG | 3 cut(s) | 572, 966, 975 |
| MunI | CAATTG | 1 cut(s) | 229 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 369, 901 |
| NdeII | GATC | 6 cut(s) | 3, 28, 86, 123, 732, 1048 |
| NheI | GCTAGC | 1 cut(s) | 269 |
| NlaIII | CATG | 6 cut(s) | 180, 298, 342, 379, 613, 829 |
| NlaIV | GGNNCC | 1 cut(s) | 182 |
| NsbI | TGCGCA | 1 cut(s) | 157 |
| NspI | RCATGY | 4 cut(s) | 298, 342, 379, 829 |
| PaeI | GCATGC | 1 cut(s) | 829 |
| PciI | ACATGT | 1 cut(s) | 294 |
| PciSI | GCTCTTC | 1 cut(s) | 81 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 874 |
| PfeI | GAWTC | 2 cut(s) | 709, 835 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 557 |
| PinAI | ACCGGT | 1 cut(s) | 965 |
| PkrI | GCNGC | 5 cut(s) | 570, 821, 824, 903, 906 |
| Ple19I | CGATCG | 1 cut(s) | 31 |
| PmaCI | CACGTG | 1 cut(s) | 869 |
| PmlI | CACGTG | 1 cut(s) | 869 |
| Ppu21I | YACGTR | 1 cut(s) | 869 |
| PscI | ACATGT | 1 cut(s) | 294 |
| PspCI | CACGTG | 1 cut(s) | 869 |
| PspN4I | GGNNCC | 1 cut(s) | 182 |
| PspPI | GGNCC | 1 cut(s) | 963 |
| PvuI | CGATCG | 1 cut(s) | 31 |
| RsaI | GTAC | 2 cut(s) | 227, 337 |
| RsaNI | GTAC | 2 cut(s) | 226, 336 |
| RseI | CAYNNNNRTG | 2 cut(s) | 175, 500 |
| Rsr2I | CGGWCCG | 1 cut(s) | 963 |
| RsrII | CGGWCCG | 1 cut(s) | 963 |
| SapI | GCTCTTC | 1 cut(s) | 81 |
| SaqAI | TTAA | 2 cut(s) | 81, 644 |
| SatI | GCNGC | 5 cut(s) | 569, 820, 823, 902, 905 |
| Sau3AI | GATC | 6 cut(s) | 3, 28, 86, 123, 732, 1048 |
| Sau96I | GGNCC | 1 cut(s) | 963 |
| SduI | GDGCHC | 2 cut(s) | 682, 868 |
| SfaNI | GCATC | 4 cut(s) | 167, 241, 300, 946 |
| SinI | GGWCC | 1 cut(s) | 963 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 175, 500 |
| SmlI | CTYRAG | 1 cut(s) | 127 |
| SmoI | CTYRAG | 1 cut(s) | 127 |
| SphI | GCATGC | 1 cut(s) | 829 |
| Sse9I | AATT | 5 cut(s) | 229, 667, 719, 776, 918 |
| SsiI | CCGC | 1 cut(s) | 101 |
| SspMI | CTAG | 1 cut(s) | 270 |
| TaaI | ACNGT | 4 cut(s) | 425, 860, 987, 1005 |
| TaiI | ACGT | 1 cut(s) | 871 |
| TaqI | TCGA | 2 cut(s) | 745, 1026 |
| TasI | AATT | 5 cut(s) | 229, 667, 719, 776, 918 |
| TatI | WGTACW | 2 cut(s) | 225, 335 |
| TfiI | GAWTC | 2 cut(s) | 709, 835 |
| Tru1I | TTAA | 2 cut(s) | 81, 644 |
| Tru9I | TTAA | 2 cut(s) | 81, 644 |
| TseI | GCWGC | 5 cut(s) | 568, 819, 822, 901, 904 |
| TspGWI | ACGGA | 1 cut(s) | 976 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 557 |
| VpaK11BI | GGWCC | 1 cut(s) | 963 |
| XapI | RAATTY | 1 cut(s) | 776 |
| XceI | RCATGY | 4 cut(s) | 298, 342, 379, 829 |
| XspI | CTAG | 1 cut(s) | 270 |