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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 526 |
| AccB1I | GGYRCC | 1 cut(s) | 508 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 306 |
| AciI | CCGC | 2 cut(s) | 347, 408 |
| AclI | AACGTT | 1 cut(s) | 109 |
| AclWI | GGATC | 1 cut(s) | 537 |
| AcsI | RAATTY | 4 cut(s) | 71, 145, 515, 709 |
| AfaI | GTAC | 2 cut(s) | 298, 540 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 306, 491 |
| AflIII | ACRYGT | 1 cut(s) | 421 |
| AgsI | TTSAA | 5 cut(s) | 117, 185, 482, 566, 716 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 57, 89 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 302, 334 |
| Alw26I | GTCTC | 2 cut(s) | 50, 651 |
| AlwI | GGATC | 1 cut(s) | 537 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 541 |
| AoxI | GGCC | 1 cut(s) | 549 |
| ApoI | RAATTY | 4 cut(s) | 71, 145, 515, 709 |
| AseI | ATTAAT | 1 cut(s) | 39 |
| AsuHPI | GGTGA | 1 cut(s) | 89 |
| AsuII | TTCGAA | 1 cut(s) | 337 |
| BanI | GGYRCC | 1 cut(s) | 508 |
| BbsI | GAAGAC | 1 cut(s) | 17 |
| BccI | CCATC | 2 cut(s) | 308, 424 |
| BceAI | ACGGC | 1 cut(s) | 433 |
| BclI | TGATCA | 1 cut(s) | 664 |
| BcoDI | GTCTC | 2 cut(s) | 50, 651 |
| BfaI | CTAG | 1 cut(s) | 171 |
| BfmI | CTRYAG | 2 cut(s) | 533, 578 |
| BfuAI | ACCTGC | 1 cut(s) | 526 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 557 |
| BmiI | GGNNCC | 1 cut(s) | 510 |
| BmsI | GCATC | 3 cut(s) | 268, 580, 602 |
| BpiI | GAAGAC | 1 cut(s) | 17 |
| Bpu14I | TTCGAA | 1 cut(s) | 337 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 306, 491 |
| Bse1I | ACTGG | 1 cut(s) | 399 |
| Bse3DI | GCAATG | 1 cut(s) | 48 |
| BseGI | GGATG | 2 cut(s) | 437, 685 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 306, 491 |
| BseMI | GCAATG | 1 cut(s) | 48 |
| BseMII | CTCAG | 1 cut(s) | 114 |
| BseNI | ACTGG | 1 cut(s) | 399 |
| BshFI | GGCC | 1 cut(s) | 551 |
| BshNI | GGYRCC | 1 cut(s) | 508 |
| BslFI | GGGAC | 1 cut(s) | 631 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 306, 491 |
| BsmAI | GTCTC | 2 cut(s) | 50, 651 |
| BsmFI | GGGAC | 1 cut(s) | 631 |
| BsnI | GGCC | 1 cut(s) | 551 |
| Bsp119I | TTCGAA | 1 cut(s) | 337 |
| Bsp143I | GATC | 2 cut(s) | 529, 664 |
| BspACI | CCGC | 2 cut(s) | 347, 408 |
| BspANI | GGCC | 1 cut(s) | 551 |
| BspCNI | CTCAG | 1 cut(s) | 115 |
| BspLI | GGNNCC | 1 cut(s) | 510 |
| BspMAI | CTGCAG | 1 cut(s) | 537 |
| BspMI | ACCTGC | 1 cut(s) | 526 |
| BspPI | GGATC | 1 cut(s) | 537 |
| BspQI | GCTCTTC | 1 cut(s) | 711 |
| BspT104I | TTCGAA | 1 cut(s) | 337 |
| BspT107I | GGYRCC | 1 cut(s) | 508 |
| BsrDI | GCAATG | 1 cut(s) | 48 |
| BsrI | ACTGG | 1 cut(s) | 399 |
| BssMI | GATC | 2 cut(s) | 529, 664 |
| Bst4CI | ACNGT | 1 cut(s) | 157 |
| Bst6I | CTCTTC | 1 cut(s) | 711 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 541 |
| BstBI | TTCGAA | 1 cut(s) | 337 |
| BstC8I | GCNNGC | 1 cut(s) | 349 |
| BstDEI | CTNAG | 1 cut(s) | 123 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 489 |
| BstF5I | GGATG | 2 cut(s) | 437, 685 |
| BstKTI | GATC | 2 cut(s) | 532, 667 |
| BstMAI | GTCTC | 2 cut(s) | 50, 651 |
| BstMBI | GATC | 2 cut(s) | 529, 664 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 541, 557 |
| BstNSI | RCATGY | 1 cut(s) | 425 |
| BstSFI | CTRYAG | 2 cut(s) | 533, 578 |
| BstV2I | GAAGAC | 1 cut(s) | 17 |
| BstX2I | RGATCY | 1 cut(s) | 529 |
| BstYI | RGATCY | 1 cut(s) | 529 |
| BsuRI | GGCC | 1 cut(s) | 551 |
| BtgZI | GCGATG | 1 cut(s) | 603 |
| BtsCI | GGATG | 2 cut(s) | 437, 685 |
| BveI | ACCTGC | 1 cut(s) | 526 |
| Cac8I | GCNNGC | 1 cut(s) | 349 |
| CaiI | CAGNNNCTG | 1 cut(s) | 541 |
| Csp6I | GTAC | 2 cut(s) | 297, 539 |
| CviAII | CATG | 4 cut(s) | 422, 545, 553, 607 |
| CviJI | RGCY | 4 cut(s) | 351, 551, 560, 577 |
| CviKI_1 | RGCY | 4 cut(s) | 351, 551, 560, 577 |
| CviQI | GTAC | 2 cut(s) | 297, 539 |
| DdeI | CTNAG | 1 cut(s) | 123 |
| DpnI | GATC | 2 cut(s) | 531, 666 |
| DpnII | GATC | 2 cut(s) | 529, 664 |
| DraI | TTTAAA | 1 cut(s) | 151 |
| Eam1104I | CTCTTC | 1 cut(s) | 711 |
| EarI | CTCTTC | 1 cut(s) | 711 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 489 |
| EcoT22I | ATGCAT | 1 cut(s) | 595 |
| FaeI | CATG | 4 cut(s) | 425, 548, 556, 610 |
| FaqI | GGGAC | 1 cut(s) | 631 |
| FatI | CATG | 4 cut(s) | 421, 544, 552, 606 |
| FauI | CCCGC | 1 cut(s) | 340 |
| FbaI | TGATCA | 1 cut(s) | 664 |
| FokI | GGATG | 2 cut(s) | 444, 692 |
| FspBI | CTAG | 1 cut(s) | 171 |
| HaeIII | GGCC | 1 cut(s) | 551 |
| Hin1II | CATG | 4 cut(s) | 425, 548, 556, 610 |
| HincII | GTYRAC | 2 cut(s) | 96, 160 |
| HindII | GTYRAC | 2 cut(s) | 96, 160 |
| HinfI | GANTC | 3 cut(s) | 185, 226, 599 |
| HpaI | GTTAAC | 1 cut(s) | 96 |
| HphI | GGTGA | 1 cut(s) | 89 |
| Hpy166II | GTNNAC | 3 cut(s) | 96, 160, 629 |
| Hpy188I | TCNGA | 4 cut(s) | 64, 124, 376, 598 |
| Hpy188III | TCNNGA | 6 cut(s) | 230, 329, 400, 429, 668, 677 |
| Hpy8I | GTNNAC | 3 cut(s) | 96, 160, 629 |
| HpyAV | CCTTC | 1 cut(s) | 122 |
| HpyCH4III | ACNGT | 1 cut(s) | 157 |
| HpyCH4IV | ACGT | 1 cut(s) | 109 |
| HpyCH4V | TGCA | 6 cut(s) | 259, 385, 535, 544, 593, 694 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 541, 557 |
| HpyF3I | CTNAG | 1 cut(s) | 123 |
| HpySE526I | ACGT | 1 cut(s) | 109 |
| Hsp92II | CATG | 4 cut(s) | 425, 548, 556, 610 |
| Ksp22I | TGATCA | 1 cut(s) | 664 |
| KspAI | GTTAAC | 1 cut(s) | 96 |
| Kzo9I | GATC | 2 cut(s) | 529, 664 |
| LguI | GCTCTTC | 1 cut(s) | 711 |
| LpnPI | CCDG | 7 cut(s) | 84, 195, 380, 414, 498, 521, 662 |
| LweI | GCATC | 3 cut(s) | 268, 580, 602 |
| MaeI | CTAG | 1 cut(s) | 171 |
| MaeII | ACGT | 1 cut(s) | 109 |
| MaeIII | GTNAC | 3 cut(s) | 166, 205, 600 |
| MalI | GATC | 2 cut(s) | 531, 666 |
| MboI | GATC | 2 cut(s) | 529, 664 |
| MboII | GAAGA | 3 cut(s) | 22, 507, 728 |
| MfeI | CAATTG | 1 cut(s) | 355 |
| MflI | RGATCY | 1 cut(s) | 529 |
| MlyI | GAGTC | 1 cut(s) | 608 |
| MnlI | CCTC | 5 cut(s) | 118, 226, 541, 615, 642 |
| Mph1103I | ATGCAT | 1 cut(s) | 595 |
| MseI | TTAA | 4 cut(s) | 39, 95, 138, 150 |
| MslI | CAYNNNNRTG | 2 cut(s) | 64, 641 |
| MunI | CAATTG | 1 cut(s) | 355 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 541, 557 |
| NdeII | GATC | 2 cut(s) | 529, 664 |
| NlaIII | CATG | 4 cut(s) | 425, 548, 556, 610 |
| NlaIV | GGNNCC | 1 cut(s) | 510 |
| NmeAIII | GCCGAG | 1 cut(s) | 79 |
| NmuCI | GTSAC | 1 cut(s) | 600 |
| NsiI | ATGCAT | 1 cut(s) | 595 |
| NspI | RCATGY | 1 cut(s) | 425 |
| NspV | TTCGAA | 1 cut(s) | 337 |
| PciI | ACATGT | 1 cut(s) | 421 |
| PciSI | GCTCTTC | 1 cut(s) | 711 |
| PfeI | GAWTC | 2 cut(s) | 185, 226 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 306 |
| PleI | GAGTC | 1 cut(s) | 607 |
| PpsI | GAGTC | 1 cut(s) | 607 |
| PscI | ACATGT | 1 cut(s) | 421 |
| PshBI | ATTAAT | 1 cut(s) | 39 |
| Psp1406I | AACGTT | 1 cut(s) | 109 |
| PspN4I | GGNNCC | 1 cut(s) | 510 |
| PstI | CTGCAG | 1 cut(s) | 537 |
| PstNI | CAGNNNCTG | 1 cut(s) | 541 |
| PsuI | RGATCY | 1 cut(s) | 529 |
| RsaI | GTAC | 2 cut(s) | 298, 540 |
| RsaNI | GTAC | 2 cut(s) | 297, 539 |
| RseI | CAYNNNNRTG | 2 cut(s) | 64, 641 |
| SapI | GCTCTTC | 1 cut(s) | 711 |
| SaqAI | TTAA | 4 cut(s) | 39, 95, 138, 150 |
| Sau3AI | GATC | 2 cut(s) | 529, 664 |
| SchI | GAGTC | 1 cut(s) | 608 |
| SetI | ASST | 8 cut(s) | 86, 103, 112, 133, 487, 540, 626, 634 |
| SfaNI | GCATC | 3 cut(s) | 268, 580, 602 |
| SfcI | CTRYAG | 2 cut(s) | 533, 578 |
| SfuI | TTCGAA | 1 cut(s) | 337 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 64, 641 |
| SsiI | CCGC | 2 cut(s) | 347, 408 |
| SspI | AATATT | 1 cut(s) | 181 |
| SspMI | CTAG | 1 cut(s) | 171 |
| TaaI | ACNGT | 1 cut(s) | 157 |
| TaiI | ACGT | 1 cut(s) | 112 |
| TaqI | TCGA | 1 cut(s) | 337 |
| TfiI | GAWTC | 2 cut(s) | 185, 226 |
| Tru1I | TTAA | 4 cut(s) | 39, 95, 138, 150 |
| Tru9I | TTAA | 4 cut(s) | 39, 95, 138, 150 |
| TseFI | GTSAC | 1 cut(s) | 600 |
| Tsp45I | GTSAC | 1 cut(s) | 600 |
| TspDTI | ATGAA | 5 cut(s) | 37, 120, 124, 462, 623 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 306 |
| VspI | ATTAAT | 1 cut(s) | 39 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 489 |
| XapI | RAATTY | 4 cut(s) | 71, 145, 515, 709 |
| XceI | RCATGY | 1 cut(s) | 425 |
| XspI | CTAG | 1 cut(s) | 171 |
| Zsp2I | ATGCAT | 1 cut(s) | 595 |