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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 377 |
| AccII | CGCG | 2 cut(s) | 806, 1053 |
| AciI | CCGC | 2 cut(s) | 542, 725 |
| AclWI | GGATC | 1 cut(s) | 1029 |
| AcoI | YGGCCR | 2 cut(s) | 140, 963 |
| AcsI | RAATTY | 3 cut(s) | 511, 563, 686 |
| AfaI | GTAC | 1 cut(s) | 185 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 634, 985 |
| AflIII | ACRYGT | 1 cut(s) | 407 |
| AgsI | TTSAA | 8 cut(s) | 121, 207, 319, 346, 521, 800, 890, 1042 |
| AjnI | CCWGG | 2 cut(s) | 217, 978 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1085, 1117 |
| Alw21I | GWGCWC | 2 cut(s) | 196, 486 |
| Alw26I | GTCTC | 4 cut(s) | 32, 439, 444, 1092 |
| AlwI | GGATC | 1 cut(s) | 1029 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 979 |
| Ama87I | CYCGRG | 1 cut(s) | 647 |
| AoxI | GGCC | 3 cut(s) | 140, 616, 963 |
| ApeKI | GCWGC | 4 cut(s) | 524, 727, 973, 1055 |
| ApoI | RAATTY | 3 cut(s) | 511, 563, 686 |
| AspLEI | GCGC | 3 cut(s) | 806, 1053, 1055 |
| AspS9I | GGNCC | 1 cut(s) | 617 |
| AsuHPI | GGTGA | 3 cut(s) | 97, 528, 686 |
| AvaI | CYCGRG | 1 cut(s) | 647 |
| BaeGI | GKGCMC | 1 cut(s) | 660 |
| BalI | TGGCCA | 1 cut(s) | 965 |
| Bbv12I | GWGCWC | 2 cut(s) | 196, 486 |
| BbvI | GCAGC | 4 cut(s) | 511, 714, 985, 1042 |
| BccI | CCATC | 3 cut(s) | 116, 608, 866 |
| BciT130I | CCWGG | 2 cut(s) | 219, 980 |
| BcoDI | GTCTC | 4 cut(s) | 32, 439, 444, 1092 |
| BfaI | CTAG | 1 cut(s) | 228 |
| BfmI | CTRYAG | 1 cut(s) | 525 |
| BfuAI | ACCTGC | 1 cut(s) | 377 |
| BglII | AGATCT | 1 cut(s) | 230 |
| BisI | GCNGC | 5 cut(s) | 525, 543, 728, 974, 1056 |
| BlsI | GCNGC | 5 cut(s) | 526, 544, 729, 975, 1057 |
| Bme1390I | CCNGG | 2 cut(s) | 219, 980 |
| BmeT110I | CYCGRG | 1 cut(s) | 647 |
| BmgT120I | GGNCC | 1 cut(s) | 617 |
| BmiI | GGNNCC | 2 cut(s) | 216, 942 |
| BmrFI | CCNGG | 2 cut(s) | 219, 980 |
| BmsI | GCATC | 2 cut(s) | 120, 760 |
| BpmI | CTGGAG | 4 cut(s) | 59, 468, 752, 959 |
| Bpu10I | CCTNAGC | 1 cut(s) | 697 |
| BpuEI | CTTGAG | 2 cut(s) | 268, 824 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1020 |
| BsaI | GGTCTC | 1 cut(s) | 444 |
| BsaJI | CCNNGG | 1 cut(s) | 454 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 634, 985 |
| Bse118I | RCCGGY | 2 cut(s) | 80, 538 |
| Bse1I | ACTGG | 2 cut(s) | 270, 451 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1020 |
| BseBI | CCWGG | 2 cut(s) | 219, 980 |
| BseDI | CCNNGG | 1 cut(s) | 454 |
| BseGI | GGATG | 5 cut(s) | 135, 308, 751, 877, 910 |
| BseJI | GATNNNNATC | 1 cut(s) | 1020 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 634, 985 |
| BseMII | CTCAG | 4 cut(s) | 27, 376, 501, 998 |
| BseNI | ACTGG | 2 cut(s) | 270, 451 |
| BsePI | GCGCGC | 1 cut(s) | 1051 |
| BseSI | GKGCMC | 1 cut(s) | 660 |
| BseXI | GCAGC | 4 cut(s) | 511, 714, 985, 1042 |
| BseYI | CCCAGC | 1 cut(s) | 1150 |
| BsgI | GTGCAG | 2 cut(s) | 405, 864 |
| Bsh1236I | CGCG | 2 cut(s) | 806, 1053 |
| BshFI | GGCC | 3 cut(s) | 142, 618, 965 |
| BsiHKAI | GWGCWC | 2 cut(s) | 196, 486 |
| BsiHKCI | CYCGRG | 1 cut(s) | 647 |
| BsiSI | CCGG | 2 cut(s) | 81, 539 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 634, 985 |
| BsmAI | GTCTC | 4 cut(s) | 32, 439, 444, 1092 |
| BsmI | GAATGC | 1 cut(s) | 806 |
| BsnI | GGCC | 3 cut(s) | 142, 618, 965 |
| Bso31I | GGTCTC | 1 cut(s) | 444 |
| BsoBI | CYCGRG | 1 cut(s) | 647 |
| Bsp1286I | GDGCHC | 3 cut(s) | 196, 486, 660 |
| Bsp143I | GATC | 4 cut(s) | 54, 230, 953, 1021 |
| BspACI | CCGC | 2 cut(s) | 542, 725 |
| BspANI | GGCC | 3 cut(s) | 142, 618, 965 |
| BspCNI | CTCAG | 4 cut(s) | 28, 375, 500, 999 |
| BspFNI | CGCG | 2 cut(s) | 806, 1053 |
| BspLI | GGNNCC | 2 cut(s) | 216, 942 |
| BspMAI | CTGCAG | 1 cut(s) | 529 |
| BspMI | ACCTGC | 1 cut(s) | 377 |
| BspPI | GGATC | 1 cut(s) | 1029 |
| BspTNI | GGTCTC | 1 cut(s) | 444 |
| BsrFI | RCCGGY | 2 cut(s) | 80, 538 |
| BsrI | ACTGG | 2 cut(s) | 270, 451 |
| BssAI | RCCGGY | 2 cut(s) | 80, 538 |
| BssECI | CCNNGG | 1 cut(s) | 454 |
| BssHII | GCGCGC | 1 cut(s) | 1051 |
| BssMI | GATC | 4 cut(s) | 54, 230, 953, 1021 |
| BssT1I | CCWWGG | 1 cut(s) | 454 |
| Bst2UI | CCWGG | 2 cut(s) | 219, 980 |
| Bst4CI | ACNGT | 1 cut(s) | 508 |
| Bst6I | CTCTTC | 4 cut(s) | 18, 538, 1037, 1110 |
| BstC8I | GCNNGC | 3 cut(s) | 606, 1053, 1148 |
| BstDEI | CTNAG | 8 cut(s) | 36, 69, 362, 487, 546, 697, 867, 1007 |
| BstF5I | GGATG | 5 cut(s) | 135, 308, 751, 877, 910 |
| BstFNI | CGCG | 2 cut(s) | 806, 1053 |
| BstHHI | GCGC | 3 cut(s) | 806, 1053, 1055 |
| BstKTI | GATC | 4 cut(s) | 57, 233, 956, 1024 |
| BstMAI | GTCTC | 4 cut(s) | 32, 439, 444, 1092 |
| BstMBI | GATC | 4 cut(s) | 54, 230, 953, 1021 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 139, 200, 233, 812, 1061 |
| BstNI | CCWGG | 2 cut(s) | 219, 980 |
| BstNSI | RCATGY | 1 cut(s) | 411 |
| BstSCI | CCNGG | 2 cut(s) | 217, 978 |
| BstSFI | CTRYAG | 1 cut(s) | 525 |
| BstSLI | GKGCMC | 1 cut(s) | 660 |
| BstUI | CGCG | 2 cut(s) | 806, 1053 |
| BstV1I | GCAGC | 4 cut(s) | 511, 714, 985, 1042 |
| BstX2I | RGATCY | 2 cut(s) | 230, 1021 |
| BstYI | RGATCY | 2 cut(s) | 230, 1021 |
| BsuRI | GGCC | 3 cut(s) | 142, 618, 965 |
| BtgZI | GCGATG | 1 cut(s) | 94 |
| BtsCI | GGATG | 5 cut(s) | 135, 308, 751, 877, 910 |
| BtsIMutI | CAGTG | 3 cut(s) | 370, 388, 504 |
| BveI | ACCTGC | 1 cut(s) | 377 |
| Cac8I | GCNNGC | 3 cut(s) | 606, 1053, 1148 |
| CaiI | CAGNNNCTG | 1 cut(s) | 979 |
| CfoI | GCGC | 3 cut(s) | 806, 1053, 1055 |
| Cfr10I | RCCGGY | 2 cut(s) | 80, 538 |
| Cfr13I | GGNCC | 1 cut(s) | 617 |
| CsiI | ACCWGGT | 1 cut(s) | 217 |
| Csp6I | GTAC | 1 cut(s) | 184 |
| CviAII | CATG | 5 cut(s) | 48, 355, 408, 947, 967 |
| CviQI | GTAC | 1 cut(s) | 184 |
| DdeI | CTNAG | 8 cut(s) | 36, 69, 362, 487, 546, 697, 867, 1007 |
| DpnI | GATC | 4 cut(s) | 56, 232, 955, 1023 |
| DpnII | GATC | 4 cut(s) | 54, 230, 953, 1021 |
| EaeI | YGGCCR | 2 cut(s) | 140, 963 |
| Eam1104I | CTCTTC | 4 cut(s) | 18, 538, 1037, 1110 |
| EarI | CTCTTC | 4 cut(s) | 18, 538, 1037, 1110 |
| Eco130I | CCWWGG | 1 cut(s) | 454 |
| Eco31I | GGTCTC | 1 cut(s) | 444 |
| Eco88I | CYCGRG | 1 cut(s) | 647 |
| EcoRI | GAATTC | 2 cut(s) | 511, 563 |
| EcoRII | CCWGG | 2 cut(s) | 217, 978 |
| EcoT14I | CCWWGG | 1 cut(s) | 454 |
| ErhI | CCWWGG | 1 cut(s) | 454 |
| FaeI | CATG | 5 cut(s) | 51, 358, 411, 950, 970 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 411, 443 |
| FatI | CATG | 5 cut(s) | 47, 354, 407, 946, 966 |
| Fnu4HI | GCNGC | 5 cut(s) | 525, 543, 728, 974, 1056 |
| FokI | GGATG | 5 cut(s) | 142, 315, 738, 884, 917 |
| Fsp4HI | GCNGC | 5 cut(s) | 525, 543, 728, 974, 1056 |
| FspBI | CTAG | 1 cut(s) | 228 |
| GlaI | GCGC | 3 cut(s) | 805, 1052, 1054 |
| GluI | GCNGC | 5 cut(s) | 525, 543, 728, 974, 1056 |
| GsaI | CCCAGC | 1 cut(s) | 1154 |
| GsuI | CTGGAG | 4 cut(s) | 59, 468, 752, 959 |
| HaeIII | GGCC | 3 cut(s) | 142, 618, 965 |
| HapII | CCGG | 2 cut(s) | 81, 539 |
| HhaI | GCGC | 3 cut(s) | 806, 1053, 1055 |
| Hin1II | CATG | 5 cut(s) | 51, 358, 411, 950, 970 |
| Hin6I | GCGC | 3 cut(s) | 804, 1051, 1053 |
| HinP1I | GCGC | 3 cut(s) | 804, 1051, 1053 |
| HindIII | AAGCTT | 3 cut(s) | 425, 714, 892 |
| HinfI | GANTC | 2 cut(s) | 530, 825 |
| HpaII | CCGG | 2 cut(s) | 81, 539 |
| HphI | GGTGA | 3 cut(s) | 97, 528, 686 |
| Hpy166II | GTNNAC | 3 cut(s) | 184, 810, 918 |
| Hpy188I | TCNGA | 6 cut(s) | 37, 97, 166, 562, 586, 912 |
| Hpy188III | TCNNGA | 6 cut(s) | 10, 76, 286, 442, 709, 841 |
| Hpy8I | GTNNAC | 3 cut(s) | 184, 810, 918 |
| Hpy99I | CGWCG | 1 cut(s) | 101 |
| HpyAV | CCTTC | 7 cut(s) | 7, 139, 283, 292, 639, 765, 896 |
| HpyCH4III | ACNGT | 1 cut(s) | 508 |
| HpyCH4IV | ACGT | 2 cut(s) | 99, 556 |
| HpyCH4V | TGCA | 9 cut(s) | 172, 386, 473, 527, 597, 751, 832, 881, 1130 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 139, 200, 233, 812, 1061 |
| HpyF3I | CTNAG | 8 cut(s) | 36, 69, 362, 487, 546, 697, 867, 1007 |
| HpySE526I | ACGT | 2 cut(s) | 99, 556 |
| Hsp92II | CATG | 5 cut(s) | 51, 358, 411, 950, 970 |
| HspAI | GCGC | 3 cut(s) | 804, 1051, 1053 |
| Kzo9I | GATC | 4 cut(s) | 54, 230, 953, 1021 |
| LmnI | GCTCC | 4 cut(s) | 78, 199, 481, 940 |
| Lsp1109I | GCAGC | 4 cut(s) | 511, 714, 985, 1042 |
| LweI | GCATC | 2 cut(s) | 120, 760 |
| MabI | ACCWGGT | 1 cut(s) | 217 |
| MaeI | CTAG | 1 cut(s) | 228 |
| MaeII | ACGT | 2 cut(s) | 99, 556 |
| MaeIII | GTNAC | 1 cut(s) | 292 |
| MalI | GATC | 4 cut(s) | 56, 232, 955, 1023 |
| MboI | GATC | 4 cut(s) | 54, 230, 953, 1021 |
| MboII | GAAGA | 5 cut(s) | 35, 525, 1025, 1054, 1127 |
| MfeI | CAATTG | 1 cut(s) | 198 |
| MflI | RGATCY | 2 cut(s) | 230, 1021 |
| MhlI | GDGCHC | 3 cut(s) | 196, 486, 660 |
| MlsI | TGGCCA | 1 cut(s) | 965 |
| MluCI | AATT | 5 cut(s) | 88, 198, 511, 563, 686 |
| MluNI | TGGCCA | 1 cut(s) | 965 |
| MlyI | GAGTC | 2 cut(s) | 524, 834 |
| MmeI | TCCRAC | 1 cut(s) | 120 |
| Mox20I | TGGCCA | 1 cut(s) | 965 |
| MscI | TGGCCA | 1 cut(s) | 965 |
| MseI | TTAA | 2 cut(s) | 429, 1083 |
| MslI | CAYNNNNRTG | 1 cut(s) | 46 |
| Msp20I | TGGCCA | 1 cut(s) | 965 |
| MspA1I | CMGCKG | 3 cut(s) | 608, 727, 1150 |
| MspI | CCGG | 2 cut(s) | 81, 539 |
| MspR9I | CCNGG | 2 cut(s) | 219, 980 |
| MunI | CAATTG | 1 cut(s) | 198 |
| Mva1269I | GAATGC | 1 cut(s) | 806 |
| MvaI | CCWGG | 2 cut(s) | 219, 980 |
| MvnI | CGCG | 2 cut(s) | 806, 1053 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 139, 200, 233, 812, 1061 |
| NdeII | GATC | 4 cut(s) | 54, 230, 953, 1021 |
| NlaIII | CATG | 5 cut(s) | 51, 358, 411, 950, 970 |
| NlaIV | GGNNCC | 2 cut(s) | 216, 942 |
| NspI | RCATGY | 1 cut(s) | 411 |
| PauI | GCGCGC | 1 cut(s) | 1051 |
| PciI | ACATGT | 1 cut(s) | 407 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 293 |
| PctI | GAATGC | 1 cut(s) | 806 |
| PkrI | GCNGC | 5 cut(s) | 526, 544, 729, 975, 1057 |
| PleI | GAGTC | 2 cut(s) | 524, 833 |
| PpsI | GAGTC | 2 cut(s) | 524, 833 |
| PscI | ACATGT | 1 cut(s) | 407 |
| Psp6I | CCWGG | 2 cut(s) | 217, 978 |
| PspFI | CCCAGC | 1 cut(s) | 1150 |
| PspGI | CCWGG | 2 cut(s) | 217, 978 |
| PspN4I | GGNNCC | 2 cut(s) | 216, 942 |
| PspPI | GGNCC | 1 cut(s) | 617 |
| PstI | CTGCAG | 1 cut(s) | 529 |
| PstNI | CAGNNNCTG | 1 cut(s) | 979 |
| PsuI | RGATCY | 2 cut(s) | 230, 1021 |
| PteI | GCGCGC | 1 cut(s) | 1051 |
| PvuII | CAGCTG | 2 cut(s) | 608, 1150 |
| RsaI | GTAC | 1 cut(s) | 185 |
| RsaNI | GTAC | 1 cut(s) | 184 |
| RseI | CAYNNNNRTG | 1 cut(s) | 46 |
| SaqAI | TTAA | 2 cut(s) | 429, 1083 |
| SatI | GCNGC | 5 cut(s) | 525, 543, 728, 974, 1056 |
| Sau3AI | GATC | 4 cut(s) | 54, 230, 953, 1021 |
| Sau96I | GGNCC | 1 cut(s) | 617 |
| SchI | GAGTC | 2 cut(s) | 524, 834 |
| ScrFI | CCNGG | 2 cut(s) | 219, 980 |
| SduI | GDGCHC | 3 cut(s) | 196, 486, 660 |
| SexAI | ACCWGGT | 1 cut(s) | 217 |
| SfaNI | GCATC | 2 cut(s) | 120, 760 |
| SfcI | CTRYAG | 1 cut(s) | 525 |
| SgrAI | CRCCGGYG | 1 cut(s) | 538 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 46 |
| SmlI | CTYRAG | 2 cut(s) | 247, 839 |
| SmoI | CTYRAG | 2 cut(s) | 247, 839 |
| Sse9I | AATT | 5 cut(s) | 88, 198, 511, 563, 686 |
| SsiI | CCGC | 2 cut(s) | 542, 725 |
| SspMI | CTAG | 1 cut(s) | 228 |
| StyD4I | CCNGG | 2 cut(s) | 217, 978 |
| StyI | CCWWGG | 1 cut(s) | 454 |
| TaaI | ACNGT | 1 cut(s) | 508 |
| TaiI | ACGT | 2 cut(s) | 102, 559 |
| TaqI | TCGA | 3 cut(s) | 57, 417, 952 |
| TasI | AATT | 5 cut(s) | 88, 198, 511, 563, 686 |
| TatI | WGTACW | 1 cut(s) | 183 |
| TauI | GCSGC | 1 cut(s) | 545 |
| Tru1I | TTAA | 2 cut(s) | 429, 1083 |
| Tru9I | TTAA | 2 cut(s) | 429, 1083 |
| TscAI | CASTG | 3 cut(s) | 370, 388, 511 |
| TseI | GCWGC | 4 cut(s) | 524, 727, 973, 1055 |
| TspDTI | ATGAA | 4 cut(s) | 17, 343, 747, 983 |
| TspGWI | ACGGA | 1 cut(s) | 169 |
| TspRI | CASTG | 3 cut(s) | 370, 388, 511 |
| XapI | RAATTY | 3 cut(s) | 511, 563, 686 |
| XceI | RCATGY | 1 cut(s) | 411 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1154 |
| XspI | CTAG | 1 cut(s) | 228 |