Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 7 - 103 | 4.2e-15 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 134, 392 |
| AcoI | YGGCCR | 1 cut(s) | 288 |
| AcsI | RAATTY | 1 cut(s) | 40 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 309 |
| AgsI | TTSAA | 1 cut(s) | 449 |
| AjnI | CCWGG | 2 cut(s) | 222, 394 |
| AluBI | AGCT | 7 cut(s) | 26, 73, 100, 219, 229, 325, 389 |
| AluI | AGCT | 7 cut(s) | 26, 73, 100, 219, 229, 325, 389 |
| Alw21I | GWGCWC | 2 cut(s) | 186, 231 |
| Alw26I | GTCTC | 1 cut(s) | 207 |
| Alw44I | GTGCAC | 1 cut(s) | 182 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 401 |
| AoxI | GGCC | 1 cut(s) | 288 |
| ApaLI | GTGCAC | 1 cut(s) | 182 |
| ApeKI | GCWGC | 2 cut(s) | 219, 407 |
| ApoI | RAATTY | 1 cut(s) | 40 |
| BaeGI | GKGCMC | 1 cut(s) | 186 |
| BalI | TGGCCA | 1 cut(s) | 290 |
| BanII | GRGCYC | 2 cut(s) | 124, 231 |
| Bbv12I | GWGCWC | 2 cut(s) | 186, 231 |
| BbvI | GCAGC | 2 cut(s) | 206, 394 |
| BciT130I | CCWGG | 2 cut(s) | 224, 396 |
| BciVI | GTATCC | 1 cut(s) | 448 |
| BcoDI | GTCTC | 1 cut(s) | 207 |
| BfaI | CTAG | 3 cut(s) | 257, 299, 459 |
| BfuI | GTATCC | 1 cut(s) | 448 |
| BisI | GCNGC | 2 cut(s) | 220, 408 |
| BlsI | GCNGC | 2 cut(s) | 221, 409 |
| Bme1390I | CCNGG | 2 cut(s) | 224, 396 |
| BmiI | GGNNCC | 1 cut(s) | 123 |
| BmrFI | CCNGG | 2 cut(s) | 224, 396 |
| BmsI | GCATC | 1 cut(s) | 320 |
| BpmI | CTGGAG | 1 cut(s) | 339 |
| BpuEI | CTTGAG | 2 cut(s) | 149, 254 |
| BsaJI | CCNNGG | 1 cut(s) | 395 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 309 |
| Bse1I | ACTGG | 1 cut(s) | 55 |
| BseBI | CCWGG | 2 cut(s) | 224, 396 |
| BseDI | CCNNGG | 1 cut(s) | 395 |
| BseGI | GGATG | 2 cut(s) | 335, 379 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 309 |
| BseMII | CTCAG | 1 cut(s) | 218 |
| BseNI | ACTGG | 1 cut(s) | 55 |
| BseRI | GAGGAG | 1 cut(s) | 114 |
| BseSI | GKGCMC | 1 cut(s) | 186 |
| BseXI | GCAGC | 2 cut(s) | 206, 394 |
| BseYI | CCCAGC | 1 cut(s) | 325 |
| BsgI | GTGCAG | 1 cut(s) | 400 |
| BshFI | GGCC | 1 cut(s) | 290 |
| BsiHKAI | GWGCWC | 2 cut(s) | 186, 231 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 309 |
| BsmAI | GTCTC | 1 cut(s) | 207 |
| BsmI | GAATGC | 1 cut(s) | 19 |
| BsnI | GGCC | 1 cut(s) | 290 |
| Bsp1286I | GDGCHC | 3 cut(s) | 124, 186, 231 |
| BspACI | CCGC | 2 cut(s) | 134, 392 |
| BspANI | GGCC | 1 cut(s) | 290 |
| BspCNI | CTCAG | 1 cut(s) | 217 |
| BspLI | GGNNCC | 1 cut(s) | 123 |
| BsrI | ACTGG | 1 cut(s) | 55 |
| BssECI | CCNNGG | 1 cut(s) | 395 |
| Bst2UI | CCWGG | 2 cut(s) | 224, 396 |
| Bst4CI | ACNGT | 2 cut(s) | 58, 284 |
| BstC8I | GCNNGC | 1 cut(s) | 102 |
| BstDEI | CTNAG | 1 cut(s) | 204 |
| BstF5I | GGATG | 2 cut(s) | 335, 379 |
| BstMAI | GTCTC | 1 cut(s) | 207 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 23, 32, 235 |
| BstNI | CCWGG | 2 cut(s) | 224, 396 |
| BstSCI | CCNGG | 2 cut(s) | 222, 394 |
| BstSLI | GKGCMC | 1 cut(s) | 186 |
| BstV1I | GCAGC | 2 cut(s) | 206, 394 |
| BsuI | GTATCC | 1 cut(s) | 448 |
| BsuRI | GGCC | 1 cut(s) | 290 |
| BtsCI | GGATG | 2 cut(s) | 335, 379 |
| Cac8I | GCNNGC | 1 cut(s) | 102 |
| CaiI | CAGNNNCTG | 1 cut(s) | 401 |
| CviAII | CATG | 1 cut(s) | 18 |
| DdeI | CTNAG | 1 cut(s) | 204 |
| EaeI | YGGCCR | 1 cut(s) | 288 |
| EciI | GGCGGA | 2 cut(s) | 149, 381 |
| Ecl136II | GAGCTC | 1 cut(s) | 229 |
| Eco24I | GRGCYC | 2 cut(s) | 124, 231 |
| Eco53kI | GAGCTC | 1 cut(s) | 229 |
| EcoICRI | GAGCTC | 1 cut(s) | 229 |
| EcoRII | CCWGG | 2 cut(s) | 222, 394 |
| EcoT22I | ATGCAT | 1 cut(s) | 19 |
| EcoT38I | GRGCYC | 2 cut(s) | 124, 231 |
| FaeI | CATG | 1 cut(s) | 21 |
| FaiI | YATR | 5 cut(s) | 19, 87, 200, 320, 386 |
| FatI | CATG | 1 cut(s) | 17 |
| Fnu4HI | GCNGC | 2 cut(s) | 220, 408 |
| FokI | GGATG | 2 cut(s) | 342, 386 |
| FriOI | GRGCYC | 2 cut(s) | 124, 231 |
| Fsp4HI | GCNGC | 2 cut(s) | 220, 408 |
| FspBI | CTAG | 3 cut(s) | 257, 299, 459 |
| GluI | GCNGC | 2 cut(s) | 220, 408 |
| GsaI | CCCAGC | 1 cut(s) | 329 |
| GsuI | CTGGAG | 1 cut(s) | 339 |
| HaeIII | GGCC | 1 cut(s) | 290 |
| Hin1II | CATG | 1 cut(s) | 21 |
| HindIII | AAGCTT | 1 cut(s) | 71 |
| HinfI | GANTC | 6 cut(s) | 143, 172, 424, 469, 490, 515 |
| Hpy166II | GTNNAC | 2 cut(s) | 184, 485 |
| Hpy188I | TCNGA | 2 cut(s) | 495, 520 |
| Hpy188III | TCNNGA | 3 cut(s) | 128, 371, 428 |
| Hpy8I | GTNNAC | 2 cut(s) | 184, 485 |
| HpyAV | CCTTC | 3 cut(s) | 456, 490, 505 |
| HpyCH4III | ACNGT | 2 cut(s) | 58, 284 |
| HpyCH4IV | ACGT | 1 cut(s) | 150 |
| HpyCH4V | TGCA | 4 cut(s) | 17, 35, 184, 381 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 23, 32, 235 |
| HpyF3I | CTNAG | 1 cut(s) | 204 |
| HpySE526I | ACGT | 1 cut(s) | 150 |
| Hsp92II | CATG | 1 cut(s) | 21 |
| LmnI | GCTCC | 5 cut(s) | 97, 127, 226, 234, 394 |
| Lsp1109I | GCAGC | 2 cut(s) | 206, 394 |
| LweI | GCATC | 1 cut(s) | 320 |
| MaeI | CTAG | 3 cut(s) | 257, 299, 459 |
| MaeII | ACGT | 1 cut(s) | 150 |
| MaeIII | GTNAC | 2 cut(s) | 140, 157 |
| MboII | GAAGA | 2 cut(s) | 433, 478 |
| MhlI | GDGCHC | 3 cut(s) | 124, 186, 231 |
| MlsI | TGGCCA | 1 cut(s) | 290 |
| MluCI | AATT | 4 cut(s) | 40, 241, 304, 441 |
| MluNI | TGGCCA | 1 cut(s) | 290 |
| MlyI | GAGTC | 1 cut(s) | 137 |
| MnlI | CCTC | 6 cut(s) | 58, 124, 135, 363, 424, 524 |
| Mox20I | TGGCCA | 1 cut(s) | 290 |
| Mph1103I | ATGCAT | 1 cut(s) | 19 |
| MscI | TGGCCA | 1 cut(s) | 290 |
| MseI | TTAA | 1 cut(s) | 213 |
| Msp20I | TGGCCA | 1 cut(s) | 290 |
| MspR9I | CCNGG | 2 cut(s) | 224, 396 |
| Mva1269I | GAATGC | 1 cut(s) | 19 |
| MvaI | CCWGG | 2 cut(s) | 224, 396 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 23, 32, 235 |
| NlaIII | CATG | 1 cut(s) | 21 |
| NlaIV | GGNNCC | 1 cut(s) | 123 |
| NmuCI | GTSAC | 1 cut(s) | 140 |
| NsiI | ATGCAT | 1 cut(s) | 19 |
| PctI | GAATGC | 1 cut(s) | 19 |
| PfeI | GAWTC | 5 cut(s) | 172, 424, 469, 490, 515 |
| PkrI | GCNGC | 2 cut(s) | 221, 409 |
| PleI | GAGTC | 1 cut(s) | 137 |
| PpsI | GAGTC | 1 cut(s) | 137 |
| Psp124BI | GAGCTC | 1 cut(s) | 231 |
| Psp6I | CCWGG | 2 cut(s) | 222, 394 |
| PspFI | CCCAGC | 1 cut(s) | 325 |
| PspGI | CCWGG | 2 cut(s) | 222, 394 |
| PspN4I | GGNNCC | 1 cut(s) | 123 |
| PstNI | CAGNNNCTG | 1 cut(s) | 401 |
| SacI | GAGCTC | 1 cut(s) | 231 |
| SaqAI | TTAA | 1 cut(s) | 213 |
| SatI | GCNGC | 2 cut(s) | 220, 408 |
| SchI | GAGTC | 1 cut(s) | 137 |
| ScrFI | CCNGG | 2 cut(s) | 224, 396 |
| SduI | GDGCHC | 3 cut(s) | 124, 186, 231 |
| SetI | ASST | 8 cut(s) | 28, 75, 102, 153, 221, 231, 327, 391 |
| SfaNI | GCATC | 1 cut(s) | 320 |
| SmlI | CTYRAG | 2 cut(s) | 128, 233 |
| SmoI | CTYRAG | 2 cut(s) | 128, 233 |
| Sse9I | AATT | 4 cut(s) | 40, 241, 304, 441 |
| SsiI | CCGC | 2 cut(s) | 134, 392 |
| SspMI | CTAG | 3 cut(s) | 257, 299, 459 |
| SstI | GAGCTC | 1 cut(s) | 231 |
| StyD4I | CCNGG | 2 cut(s) | 222, 394 |
| TaaI | ACNGT | 2 cut(s) | 58, 284 |
| TaiI | ACGT | 1 cut(s) | 153 |
| TasI | AATT | 4 cut(s) | 40, 241, 304, 441 |
| TfiI | GAWTC | 5 cut(s) | 172, 424, 469, 490, 515 |
| Tru1I | TTAA | 1 cut(s) | 213 |
| Tru9I | TTAA | 1 cut(s) | 213 |
| TseFI | GTSAC | 1 cut(s) | 140 |
| TseI | GCWGC | 2 cut(s) | 219, 407 |
| Tsp45I | GTSAC | 1 cut(s) | 140 |
| TspDTI | ATGAA | 5 cut(s) | 17, 185, 335, 434, 524 |
| VneI | GTGCAC | 1 cut(s) | 182 |
| XapI | RAATTY | 1 cut(s) | 40 |
| XspI | CTAG | 3 cut(s) | 257, 299, 459 |
| Zsp2I | ATGCAT | 1 cut(s) | 19 |