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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 130 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 165 |
| AgsI | TTSAA | 4 cut(s) | 67, 142, 199, 235 |
| AluBI | AGCT | 2 cut(s) | 371, 412 |
| AluI | AGCT | 2 cut(s) | 371, 412 |
| Alw21I | GWGCWC | 1 cut(s) | 508 |
| Alw26I | GTCTC | 1 cut(s) | 96 |
| Alw44I | GTGCAC | 1 cut(s) | 504 |
| ApaLI | GTGCAC | 1 cut(s) | 504 |
| ApeKI | GCWGC | 1 cut(s) | 7 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 446, 478 |
| AsuHPI | GGTGA | 1 cut(s) | 65 |
| BaeGI | GKGCMC | 1 cut(s) | 508 |
| BauI | CACGAG | 1 cut(s) | 357 |
| BbsI | GAAGAC | 2 cut(s) | 26, 223 |
| Bbv12I | GWGCWC | 1 cut(s) | 508 |
| BbvI | GCAGC | 1 cut(s) | 19 |
| BciVI | GTATCC | 1 cut(s) | 336 |
| BclI | TGATCA | 1 cut(s) | 171 |
| BcoDI | GTCTC | 1 cut(s) | 96 |
| BfmI | CTRYAG | 1 cut(s) | 131 |
| BfuI | GTATCC | 1 cut(s) | 336 |
| BisI | GCNGC | 1 cut(s) | 8 |
| BlsI | GCNGC | 1 cut(s) | 9 |
| BmsI | GCATC | 1 cut(s) | 460 |
| BpiI | GAAGAC | 2 cut(s) | 26, 223 |
| Bsa29I | ATCGAT | 1 cut(s) | 498 |
| BsaI | GGTCTC | 1 cut(s) | 96 |
| BsaJI | CCNNGG | 1 cut(s) | 379 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 165 |
| BseCI | ATCGAT | 1 cut(s) | 498 |
| BseDI | CCNNGG | 1 cut(s) | 379 |
| BseGI | GGATG | 2 cut(s) | 174, 453 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 165 |
| BseSI | GKGCMC | 1 cut(s) | 508 |
| BseXI | GCAGC | 1 cut(s) | 19 |
| BshVI | ATCGAT | 1 cut(s) | 498 |
| BsiHKAI | GWGCWC | 1 cut(s) | 508 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 165 |
| BsmAI | GTCTC | 1 cut(s) | 96 |
| BsmI | GAATGC | 2 cut(s) | 266, 390 |
| Bso31I | GGTCTC | 1 cut(s) | 96 |
| Bsp1286I | GDGCHC | 1 cut(s) | 508 |
| Bsp143I | GATC | 4 cut(s) | 171, 219, 450, 495 |
| BspDI | ATCGAT | 1 cut(s) | 498 |
| BspHI | TCATGA | 1 cut(s) | 34 |
| BspTNI | GGTCTC | 1 cut(s) | 96 |
| BssECI | CCNNGG | 1 cut(s) | 379 |
| BssMI | GATC | 4 cut(s) | 171, 219, 450, 495 |
| BssSI | CACGAG | 1 cut(s) | 357 |
| BssT1I | CCWWGG | 1 cut(s) | 379 |
| Bst2BI | CACGAG | 1 cut(s) | 357 |
| Bst4CI | ACNGT | 3 cut(s) | 55, 117, 135 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 57 |
| BstF5I | GGATG | 2 cut(s) | 174, 453 |
| BstKTI | GATC | 4 cut(s) | 174, 222, 453, 498 |
| BstMAI | GTCTC | 1 cut(s) | 96 |
| BstMBI | GATC | 4 cut(s) | 171, 219, 450, 495 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 57, 418 |
| BstNSI | RCATGY | 1 cut(s) | 64 |
| BstSFI | CTRYAG | 1 cut(s) | 131 |
| BstSLI | GKGCMC | 1 cut(s) | 508 |
| BstV1I | GCAGC | 1 cut(s) | 19 |
| BstV2I | GAAGAC | 2 cut(s) | 26, 223 |
| Bsu15I | ATCGAT | 1 cut(s) | 498 |
| BsuI | GTATCC | 1 cut(s) | 336 |
| BsuTUI | ATCGAT | 1 cut(s) | 498 |
| BtgZI | GCGATG | 1 cut(s) | 506 |
| BtsCI | GGATG | 2 cut(s) | 174, 453 |
| BtsI | GCAGTG | 1 cut(s) | 17 |
| BtsIMutI | CAGTG | 1 cut(s) | 17 |
| CciI | TCATGA | 1 cut(s) | 34 |
| ClaI | ATCGAT | 1 cut(s) | 498 |
| CviAII | CATG | 2 cut(s) | 35, 61 |
| CviJI | RGCY | 4 cut(s) | 92, 371, 412, 433 |
| CviKI_1 | RGCY | 4 cut(s) | 92, 371, 412, 433 |
| DpnI | GATC | 4 cut(s) | 173, 221, 452, 497 |
| DpnII | GATC | 4 cut(s) | 171, 219, 450, 495 |
| DraI | TTTAAA | 1 cut(s) | 249 |
| Eco130I | CCWWGG | 1 cut(s) | 379 |
| Eco31I | GGTCTC | 1 cut(s) | 96 |
| EcoT14I | CCWWGG | 1 cut(s) | 379 |
| ErhI | CCWWGG | 1 cut(s) | 379 |
| FaeI | CATG | 2 cut(s) | 38, 64 |
| FaiI | YATR | 7 cut(s) | 36, 62, 99, 120, 224, 288, 304 |
| FatI | CATG | 2 cut(s) | 34, 60 |
| FbaI | TGATCA | 1 cut(s) | 171 |
| FblI | GTMKAC | 1 cut(s) | 130 |
| Fnu4HI | GCNGC | 1 cut(s) | 8 |
| FokI | GGATG | 2 cut(s) | 181, 460 |
| Fsp4HI | GCNGC | 1 cut(s) | 8 |
| GluI | GCNGC | 1 cut(s) | 8 |
| Hin1II | CATG | 2 cut(s) | 38, 64 |
| HinfI | GANTC | 3 cut(s) | 31, 399, 442 |
| HphI | GGTGA | 1 cut(s) | 65 |
| Hpy166II | GTNNAC | 2 cut(s) | 131, 506 |
| Hpy188I | TCNGA | 2 cut(s) | 318, 447 |
| Hpy188III | TCNNGA | 4 cut(s) | 35, 179, 298, 359 |
| Hpy8I | GTNNAC | 2 cut(s) | 131, 506 |
| HpyAV | CCTTC | 2 cut(s) | 74, 389 |
| HpyCH4III | ACNGT | 3 cut(s) | 55, 117, 135 |
| HpyCH4V | TGCA | 5 cut(s) | 51, 60, 264, 473, 506 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 57, 418 |
| Hsp92II | CATG | 2 cut(s) | 38, 64 |
| Ksp22I | TGATCA | 1 cut(s) | 171 |
| Kzo9I | GATC | 4 cut(s) | 171, 219, 450, 495 |
| LpnPI | CCDG | 3 cut(s) | 192, 199, 440 |
| Lsp1109I | GCAGC | 1 cut(s) | 19 |
| LweI | GCATC | 1 cut(s) | 460 |
| MaeIII | GTNAC | 2 cut(s) | 400, 481 |
| MalI | GATC | 4 cut(s) | 173, 221, 452, 497 |
| MboI | GATC | 4 cut(s) | 171, 219, 450, 495 |
| MboII | GAAGA | 7 cut(s) | 28, 31, 37, 40, 160, 223, 374 |
| MhlI | GDGCHC | 1 cut(s) | 508 |
| MluCI | AATT | 1 cut(s) | 67 |
| MlyI | GAGTC | 1 cut(s) | 408 |
| MnlI | CCTC | 2 cut(s) | 186, 271 |
| MseI | TTAA | 1 cut(s) | 248 |
| Mva1269I | GAATGC | 2 cut(s) | 266, 390 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 57, 418 |
| NdeII | GATC | 4 cut(s) | 171, 219, 450, 495 |
| NlaIII | CATG | 2 cut(s) | 38, 64 |
| NmuCI | GTSAC | 2 cut(s) | 400, 481 |
| NspI | RCATGY | 1 cut(s) | 64 |
| PagI | TCATGA | 1 cut(s) | 34 |
| PctI | GAATGC | 2 cut(s) | 266, 390 |
| PfeI | GAWTC | 2 cut(s) | 31, 442 |
| PkrI | GCNGC | 1 cut(s) | 9 |
| PleI | GAGTC | 1 cut(s) | 407 |
| PpsI | GAGTC | 1 cut(s) | 407 |
| SaqAI | TTAA | 1 cut(s) | 248 |
| SatI | GCNGC | 1 cut(s) | 8 |
| Sau3AI | GATC | 4 cut(s) | 171, 219, 450, 495 |
| SchI | GAGTC | 1 cut(s) | 408 |
| SduI | GDGCHC | 1 cut(s) | 508 |
| SetI | ASST | 4 cut(s) | 161, 197, 373, 414 |
| SfaNI | GCATC | 1 cut(s) | 460 |
| SfcI | CTRYAG | 1 cut(s) | 131 |
| Sse9I | AATT | 1 cut(s) | 67 |
| StyI | CCWWGG | 1 cut(s) | 379 |
| TaaI | ACNGT | 3 cut(s) | 55, 117, 135 |
| TaqI | TCGA | 3 cut(s) | 408, 453, 498 |
| TaqII | GACCGA | 1 cut(s) | 120 |
| TasI | AATT | 1 cut(s) | 67 |
| TfiI | GAWTC | 2 cut(s) | 31, 442 |
| Tru1I | TTAA | 1 cut(s) | 248 |
| Tru9I | TTAA | 1 cut(s) | 248 |
| TscAI | CASTG | 1 cut(s) | 17 |
| TseFI | GTSAC | 2 cut(s) | 400, 481 |
| TseI | GCWGC | 1 cut(s) | 7 |
| Tsp45I | GTSAC | 2 cut(s) | 400, 481 |
| TspDTI | ATGAA | 4 cut(s) | 17, 167, 273, 275 |
| TspGWI | ACGGA | 1 cut(s) | 255 |
| TspRI | CASTG | 1 cut(s) | 17 |
| VneI | GTGCAC | 1 cut(s) | 504 |
| XceI | RCATGY | 1 cut(s) | 64 |
| XmiI | GTMKAC | 1 cut(s) | 130 |