RLG00000029824

MATH domain and coiled-coil domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
49844087 .. 49847536
3450 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029824

Sequence Viewer

Length: 1602 bp
ATGAGCTTCCCTCACCGCCTCGATCCCCTCTTCTTCGCTGTCGCCGGCGCTCTTGATCCTCTGCCTGTCGAATTGCCCCTCAAATTCCCCTCCCCTCCTTACCCTTCTCCCCCACCGCCTCGATCCCCTCTTCTTCGCTGTCAACGGCGCCGCCGCTTCTCCATCGGAATCCACTTTCATGCACCACAGGTGCTTCTGGTTCGATCTGCCTTTTTTGTGGATAATCCGTCAATCTCCGCAAAACTCCGCAACGGCCACAAGTGGAGTCTTTTCCTTGAGTGGGGCCCAAGTGACCCCTGGCCGCAAACGCGTTTGTGGCGCATTGGCGAGCCACGTCACCTCGTCTCATGTCGGCGGATCGTGGTGTATCCAAAAGGGAGCAATGGGAGGCAATACTTGTCCATGTACTTGAACGTTGCAGATGCTTCAAAGTTACCATCTGGGTGGAGTCGATATGCCCAGTTCACCTTGACTGTCGTTAATCAATTTAACAGCGACAAATCGATAACAATAGACACTCAGCATGAGTTCAGTGAAAAAAAAAGTGACTGGGGCTTCACATCATTCATGCCTCTGAGTGAGCTTTTTGACCCAAATGAAGGGTATCTCGTGGATGACACATGTATTGTTGAAGCTGAGGTTGCAGTCAGTAAAGCTGACATTAAGGTTTTAAAAGACCAAGAAACTGCCTTTGTTGAGCAGGAACTTCAAAGTCAGTCTTCAGATGTGGATTCTGTGAAATATTCGGATGCTTCAACCACACATACATCACTTAGTAATGAACAGACGCTTGCTTTTCAGGATGCAATAAATTCTGACCCTATTCGATCAACTGTTGATTCTGTGAAAGTTCGAAACTTGAAAATAGAACCAAGATCTGATCAAGTGCTTCCTTACCAGGAGACTGATATCCCAGTTAGCCCTCCCATAGTTGAGGACAACGATGAAGCTCCCTCCAGCCCACTGACCCCAGTTGGCGAGCTCGCAGATTTCAGGGGATTAGGGAAAGTAGATAAAGCTTTTGTTCCGCTGCTGGAAGAAGTCTGTTCATGGCATCCTTCGTTGATTAGCTGCCAGAGGAAAAGAAGTCTCATGTTTAGTGGATGGGCATTCACAGCTTTGGGTCGACTATTGCATTTTCTGAACACTACAAATGTTAGGGATATGATGGAGGATCCACGTGAGCATGATCCATGTGAGCACCTTCAAGTTTTGTGGGACGAGGTTGAGACCTTCAGATTCGACTTGAGCTGGCTGGAGCCTTATGTTCAATCAGCTTTGGGAATAAAGAAGTTTGGGGAGAGGGAAGGAGTTTTGAAGAAACTCAGAGAGGATGTTGATGCTTTGGAGGCTGAAATGAAGAGGTTAAGGGAGAGGCTATCTGTTGCTGAGGTCGATCACGCTGTTGCAAAAAGAAACCTAGCAAAGGCAGAGGAAAGCTTTGGTGAGGCAAATTTGAACAGCAAGCTCGGTGACAGGCATAGAGTTGAGGTTCTCATTGAGGATGAAAGCGATCAAACCGCAGCTGTATTAAGGGGGAAAATGGCGGAAGACCTCTTTGAAATCTCATGTGAAGACATCATTGTCAAAAAAACCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

534

Amino Acids

60.46

Weight (kDa)

5.35

Isoelectric Point (pI)

48.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MATH_2 PF22486 119 - 214 6.6e-26 MATH domain
MATH PF00917 120 - 216 8.1e-13 MATH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000025)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31370 AT1G31380 AT1G31390 AT1G31400 AT2G01790 AT2G05400 AT2G05400 AT2G05400 AT2G05410 AT2G05410 AT2G05420 AT2G05430 AT2G42455 AT2G42460 AT2G42465 AT2G42470 AT2G42475 AT2G42480 AT3G27040 AT3G29580 AT3G44790 AT3G44800 AT3G44805 AT3G58200 AT3G58210 AT3G58220 AT3G58220 AT3G58220 AT3G58220 AT3G58220 AT3G58230 AT3G58240 AT3G58250 AT3G58260 AT3G58270 AT3G58270 AT3G58270 AT3G58280 AT3G58290 AT3G58290 AT3G58290 AT3G58300 AT3G58320 AT3G58330 AT3G58340 AT3G58340 AT3G58350 AT3G58350 AT3G58360 AT3G58370 AT3G58380 AT3G58400 AT3G58410 AT3G58410 AT3G58430 AT3G58430 AT3G58440 AT5G03550
fragaria_vesca FvH4_2g00084 FvH4_2g15701 FvH4_2g24334 FvH4_3g23322 FvH4_3g23322 FvH4_3g23322 FvH4_3g23482 FvH4_3g23482 FvH4_3g23482 FvH4_3g23491 FvH4_3g23492 FvH4_3g23510 FvH4_3g23520 FvH4_3g23520 FvH4_3g23520 FvH4_3g23580 FvH4_3g38842 FvH4_4g10396 FvH4_5g29370 FvH4_5g32130 FvH4_7g04570 FvH4_7g04571 FvH4_7g04741 FvH4_7g04741 FvH4_7g04750 FvH4_7g04750 FvH4_7g04760 FvH4_7g04760 FvH4_7g04760 FvH4_7g04760 FvH4_7g04760 FvH4_7g04770 FvH4_7g04770 FvH4_7g04770
malus_domestica MD00G1065000.v1.1 MD00G1065300.v1.1 MD02G1267400.v1.1 MD02G1267600.v1.1 MD02G1267700.v1.1 MD02G1267800.v1.1 MD02G1268100.v1.1 MD02G1268300.v1.1 MD02G1268400.v1.1 MD02G1268500.v1.1 MD03G1193600.v1.1 MD05G1071400.v1.1 MD07G1051000.v1.1 MD07G1051100.v1.1 MD07G1051200.v1.1 MD07G1051300.v1.1 MD07G1051500.v1.1 MD07G1051700.v1.1 MD07G1051800.v1.1 MD07G1085400.v1.1 MD07G1085500.v1.1 MD11G1177200.v1.1 MD11G1209800.v1.1 MD11G1209900.v1.1 MD11G1210000.v1.1 MD12G1048100.v1.1 MD12G1048600.v1.1 MD14G1046700.v1.1 MD14G1047400.v1.1
prunus_persica Prupe.2G051200_v2.0.a1 Prupe.2G052500_v2.0.a1 Prupe.2G052500_v2.0.a1 Prupe.2G052600_v2.0.a1 Prupe.2G052600_v2.0.a1 Prupe.2G052700_v2.0.a1 Prupe.2G052800_v2.0.a1 Prupe.2G052900_v2.0.a1 Prupe.2G052900_v2.0.a1 Prupe.2G053100_v2.0.a1 Prupe.2G053300_v2.0.a1 Prupe.2G054800_v2.0.a1 Prupe.2G054900_v2.0.a1 Prupe.2G054900_v2.0.a1 Prupe.2G054900_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.4G223300_v2.0.a1 Prupe.4G223300_v2.0.a1
pyrus_communis pycom01g04720 pycom02g22950 pycom02g22960 pycom02g22970 pycom02g22990 pycom02g23000 pycom02g23010 pycom03g14600 pycom03g14610 pycom05g06150 pycom07g03820 pycom07g03830 pycom07g03850 pycom07g03860 pycom07g03880 pycom07g03890 pycom07g03900 pycom07g04000 pycom07g04010 pycom11g18540 pycom11g18560 pycom12g04190 pycom17g19100
rosa_chinensis RchiOBHm_Chr0c19g0500051 RchiOBHm_Chr1g0330011 RchiOBHm_Chr1g0330031 RchiOBHm_Chr1g0330041 RchiOBHm_Chr1g0330121 RchiOBHm_Chr1g0330141 RchiOBHm_Chr1g0330151 RchiOBHm_Chr1g0330181 RchiOBHm_Chr1g0330191 RchiOBHm_Chr1g0330201 RchiOBHm_Chr1g0330211 RchiOBHm_Chr1g0330221 RchiOBHm_Chr1g0367471 RchiOBHm_Chr2g0113311 RchiOBHm_Chr2g0148281 RchiOBHm_Chr4g0400061 RchiOBHm_Chr4g0437571 RchiOBHm_Chr5g0041361 RchiOBHm_Chr5g0041421 RchiOBHm_Chr5g0041481 RchiOBHm_Chr5g0041491 RchiOBHm_Chr5g0041501 RchiOBHm_Chr5g0041511 RchiOBHm_Chr5g0042491 RchiOBHm_Chr5g0042501 RchiOBHm_Chr6g0263551 RchiOBHm_Chr6g0286221 RchiOBHm_Chr7g0228171 RchiOBHm_Chr7g0231391 RchiOBHm_Chr7g0231401
rosa_laevigata RLG00000000870 RLG00000001420 RLG00000001582 RLG00000001602 RLG00000001700 RLG00000002476 RLG00000005787 RLG00000007689 RLG00000008446 RLG00000008811 RLG00000008812 RLG00000009013 RLG00000009942 RLG00000012752 RLG00000013511 RLG00000014053 RLG00000015257 RLG00000015258 RLG00000016149 RLG00000016691 RLG00000018661 RLG00000018662 RLG00000020991 RLG00000020992 RLG00000020993 RLG00000027309 RLG00000028568 RLG00000029119 RLG00000029371 RLG00000029563 RLG00000029818 RLG00000029819 RLG00000029821 RLG00000029822 RLG00000029824 RLG00000029827 RLG00000029828 RLG00000029829 RLG00000029841 RLG00000029843 RLG00000032676 RLG00000033366 RLG00000033367 RLG00000034023 RLG00000034066 RLG00000034072 RLG00000034073 RLG00000034074 RLG00000034130 RLG00000034133 RLG00000035487 RLG00000035488 RLG00000035793
rosa_multiflora Rmu_co8241405.1_g000001 Rmu_co8251033.1_g000001 Rmu_co8297611.1_g000001 Rmu_co8346639.1_g000001 Rmu_co8405917.1_g000001 Rmu_sc0000045.1_g000044 Rmu_sc0000061.1_g000032 Rmu_sc0000068.1_g000021 Rmu_sc0000068.1_g000022 Rmu_sc0000415.1_g000001 Rmu_sc0000499.1_g000003 Rmu_sc0000594.1_g000020 Rmu_sc0000673.1_g000007 Rmu_sc0000908.1_g000004 Rmu_sc0001123.1_g000013 Rmu_sc0001123.1_g000014 Rmu_sc0001167.1_g000026 Rmu_sc0001598.1_g000011 Rmu_sc0001696.1_g000003 Rmu_sc0001696.1_g000011 Rmu_sc0001696.1_g000019 Rmu_sc0001696.1_g000020 Rmu_sc0003007.1_g000016 Rmu_sc0003007.1_g000029 Rmu_sc0003051.1_g000010 Rmu_sc0003396.1_g000029 Rmu_sc0004798.1_g000020 Rmu_sc0005375.1_g000016 Rmu_sc0005375.1_g000017 Rmu_sc0005659.1_g000033 Rmu_sc0005659.1_g000034 Rmu_sc0006311.1_g000011 Rmu_sc0008249.1_g000002 Rmu_sc0008249.1_g000018 Rmu_sc0008600.1_g000014 Rmu_sc0009365.1_g000010 Rmu_sc0009365.1_g000022 Rmu_sc0009365.1_g000025 Rmu_sc0011112.1_g000008 Rmu_sc0011112.1_g000009 Rmu_sc0012031.1_g000020 Rmu_sc0013350.1_g000014 Rmu_sc0020359.1_g000004 Rmu_sc0021997.1_g000003 Rmu_sc0021997.1_g000004 Rmu_sc0023610.1_g000002 Rmu_sc0023611.1_g000001 Rmu_sc0028894.1_g000001 Rmu_sc0031050.1_g000001 Rmu_sc0041109.1_g000001 Rmu_ssc0000087.1_g000050 Rmu_ssc0000087.1_g000051 Rmu_ssc0000087.1_g000052 Rmu_ssc0000295.1_g000058 Rmu_ssc0000343.1_g000031 Rmu_ssc0000423.1_g000015 Rmu_ssc0000470.1_g000005 Rmu_ssc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00005900 Rroxscaffold_1G00005910 Rroxscaffold_1G00012600 Rroxscaffold_1G00016860 Rroxscaffold_1G00032110 Rroxscaffold_1G00038140 Rroxscaffold_1G00038200 Rroxscaffold_1G00039020 Rroxscaffold_1G00039030 Rroxscaffold_1G00039080 Rroxscaffold_1G00039090 Rroxscaffold_1G00039270 Rroxscaffold_2G00097120 Rroxscaffold_2G00097130 Rroxscaffold_2G00137700 Rroxscaffold_2G00151740 Rroxscaffold_2G00151750 Rroxscaffold_3G00224160 Rroxscaffold_3G00224170 Rroxscaffold_3G00226080 Rroxscaffold_3G00226090 Rroxscaffold_3G00229350 Rroxscaffold_3G00231340 Rroxscaffold_4G00291390 Rroxscaffold_4G00316220 Rroxscaffold_4G00316230 Rroxscaffold_4G00320040 Rroxscaffold_4G00320050 Rroxscaffold_4G00320120 Rroxscaffold_4G00320140 Rroxscaffold_4G00320180 Rroxscaffold_4G00320270 Rroxscaffold_4G00320280 Rroxscaffold_4G00320290 Rroxscaffold_4G00320430 Rroxscaffold_4G00321910 Rroxscaffold_5G00348730 Rroxscaffold_5G00355020 Rroxscaffold_5G00355080 Rroxscaffold_5G00357490 Rroxscaffold_5G00376500 Rroxscaffold_5G00376510 Rroxscaffold_7G00179590 Rroxscaffold_7G00179600 Rroxscaffold_7G00198610
rosa_rugosa Rorug01G0085400 Rorug01G0085400 Rorug01G0085400 Rorug01G0085400 Rorug01G0085400 Rorug01G0085400 Rorug01G0086300 Rorug01G0086500 Rorug01G0087000 Rorug01G0087100 Rorug01G0087600 Rorug01G0087700 Rorug01G0087800 Rorug01G0087800 Rorug01G0302500 Rorug02G0249300 Rorug02G0249300 Rorug02G0249400 Rorug03G0189000 Rorug04G0181800 Rorug04G0283800.1 Rorug04G0283900.1 Rorug05G0043500 Rorug05G0191800 Rorug05G0191900 Rorug05G0192800 Rorug05G0192900 Rorug05G0193000 Rorug05G0201000 Rorug05G0201100 Rorug06G0173900 Rorug06G0173900 Rorug07G0009800 Rorug07G0246300.1 Rorug07G0246400
rosa_samantha Rh1AG103600 Rh1AG104800 Rh1AG105200 Rh1AG105300 Rh1AG105500 Rh1BG082000 Rh1BG082200 Rh1BG082300 Rh1BG082900 Rh1BG083000 Rh1BG083300 Rh1BG083500 Rh1BG083600 Rh1BG083800 Rh1BG083900 Rh1BG084000 Rh1BG084100 Rh1BG084200 Rh1BG092200 Rh1BG275300 Rh1CG098700 Rh1CG098800 Rh1CG100300 Rh1CG100400 Rh1CG100600 Rh1CG100900 Rh1CG101000 Rh1CG101700 Rh1DG066900 Rh1DG067000 Rh1DG106000 Rh1DG107600 Rh1DG107800 Rh1DG108100 Rh1DG108200 Rh1DG108600 Rh1DG108700 Rh1DG108900 Rh1DG109000 Rh1DG109100 Rh1DG109300 Rh1DG109400 Rh1DG109500 Rh1DG109700 Rh1DG109800 Rh1DG173900 Rh2AG270300 Rh2AG398900 Rh2CG245000 Rh2CG260700 Rh2CG278600 Rh2CG342400 Rh2CG385700 Rh3DG197200 Rh3DG197300 Rh4AG015100 Rh4BG347400 Rh4DG360400 Rh5AG278600 Rh5AG278700 Rh5AG286900 Rh5AG287000 Rh5BG282900 Rh5BG283000 Rh5BG283100 Rh5BG291400 Rh5CG314900 Rh5CG315100 Rh5CG315400 Rh5CG315700 Rh5CG315900 Rh5CG316000 Rh5CG323600 Rh5CG323700 Rh5DG291400 Rh5DG292300 Rh5DG292500 Rh5DG292700 Rh5DG292800 Rh5DG292900 Rh5DG301100 Rh5DG301200 Rh5DG301400 Rh5DG350900 Rh6BG407700 Rh6CG294900 Rh6DG286900 Rh7AG400400 Rh7AG420600 Rh7BG381700 Rh7BG395000 Rh7CG418600 Rh7CG440700 Rh7DG396500 Rh7DG413200
rosa_wichuraiana Rw1G003300 Rw1G008240 Rw1G008250 Rw1G008270 Rw1G008330 Rw1G008340 Rw1G008350 Rw1G008360 Rw1G008370 Rw1G008810 Rw1G021140 Rw3G020650 Rw5G026150 Rw5G026200 Rw5G026240 Rw5G026250 Rw5G026650 Rw5G030820 Rw7G006630 Rw7G030060 Rw7G034700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1583
AccB1I GGYRCC 1 cut(s) 147
AccI GTMKAC 1 cut(s) 1126
AccII CGCG 1 cut(s) 310
AclI AACGTT 1 cut(s) 414
AclWI GGATC 7 cut(s) 17, 50, 117, 365, 1169, 1182, 1184
AcoI YGGCCR 2 cut(s) 253, 299
AcsI RAATTY 3 cut(s) 83, 811, 1453
AcuI CTGAAG 2 cut(s) 705, 1219
AcvI CACGTG 1 cut(s) 1181
AcyI GRCGYC 1 cut(s) 148
AfaI GTAC 1 cut(s) 407
AfiI CCNNNNNNNGG 3 cut(s) 280, 599, 1426
AflIII ACRYGT 2 cut(s) 308, 620
AjiI CACGTC 1 cut(s) 335
AjnI CCWGG 2 cut(s) 296, 897
Alw21I GWGCWC 2 cut(s) 984, 1203
Alw26I GTCTC 4 cut(s) 349, 896, 1094, 1223
AlwI GGATC 7 cut(s) 17, 50, 117, 365, 1169, 1182, 1184
AoxI GGCC 3 cut(s) 253, 283, 299
ApaI GGGCCC 1 cut(s) 287
ApeKI GCWGC 3 cut(s) 1030, 1071, 1523
ApoI RAATTY 3 cut(s) 83, 811, 1453
AspLEI GCGC 3 cut(s) 50, 150, 321
AspS9I GGNCC 2 cut(s) 283, 284
AsuHPI GGTGA 5 cut(s) 5, 329, 457, 1457, 1484
AsuII TTCGAA 1 cut(s) 853
BaeGI GKGCMC 1 cut(s) 287
BamHI GGATCC 1 cut(s) 1174
BanI GGYRCC 1 cut(s) 147
BanII GRGCYC 2 cut(s) 287, 984
BauI CACGAG 1 cut(s) 608
BbrPI CACGTG 1 cut(s) 1181
BbsI GAAGAC 3 cut(s) 711, 1557, 1581
Bbv12I GWGCWC 2 cut(s) 984, 1203
BbvCI CCTCAGC 2 cut(s) 636, 1389
BbvI GCAGC 3 cut(s) 1017, 1058, 1535
BccI CCATC 4 cut(s) 170, 445, 1098, 1162
BceAI ACGGC 2 cut(s) 161, 268
BciT130I CCWGG 2 cut(s) 298, 899
BciVI GTATCC 1 cut(s) 378
BclI TGATCA 1 cut(s) 880
BcoDI GTCTC 4 cut(s) 349, 896, 1094, 1223
BfaI CTAG 1 cut(s) 1421
BfmI CTRYAG 1 cut(s) 1598
BfoI RGCGCY 2 cut(s) 51, 151
BfuI GTATCC 1 cut(s) 378
BglII AGATCT 1 cut(s) 875
BisI GCNGC 6 cut(s) 151, 154, 302, 1031, 1072, 1524
BlsI GCNGC 6 cut(s) 152, 155, 303, 1032, 1073, 1525
Bme1390I CCNGG 2 cut(s) 298, 899
BmgBI CACGTC 1 cut(s) 335
BmgT120I GGNCC 2 cut(s) 283, 284
BmiI GGNNCC 5 cut(s) 149, 284, 285, 1176, 1260
BmrFI CCNGG 2 cut(s) 298, 899
BmrI ACTGGG 4 cut(s) 454, 559, 908, 965
BmsI GCATC 5 cut(s) 412, 739, 793, 1063, 1330
BmuI ACTGGG 4 cut(s) 454, 559, 908, 965
BpiI GAAGAC 3 cut(s) 711, 1557, 1581
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 2 cut(s) 940, 1277
Bpu10I CCTNAGC 2 cut(s) 636, 1389
Bpu14I TTCGAA 1 cut(s) 853
BpuEI CTTGAG 2 cut(s) 296, 1267
Bsa29I ATCGAT 1 cut(s) 503
BsaAI YACGTR 1 cut(s) 1181
BsaHI GRCGYC 1 cut(s) 148
BsaI GGTCTC 1 cut(s) 1223
BsaJI CCNNGG 1 cut(s) 296
Bsc4I CCNNNNNNNGG 3 cut(s) 280, 599, 1426
Bse118I RCCGGY 1 cut(s) 44
Bse1I ACTGG 4 cut(s) 460, 554, 914, 971
Bse3DI GCAATG 1 cut(s) 388
BseBI CCWGG 2 cut(s) 298, 899
BseCI ATCGAT 1 cut(s) 503
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 7 cut(s) 619, 754, 808, 1054, 1109, 1339, 1510
BseLI CCNNNNNNNGG 3 cut(s) 280, 599, 1426
BseMI GCAATG 1 cut(s) 388
BseMII CTCAG 5 cut(s) 533, 566, 627, 1339, 1380
BseNI ACTGG 4 cut(s) 460, 554, 914, 971
BseSI GKGCMC 1 cut(s) 287
BseXI GCAGC 3 cut(s) 1017, 1058, 1535
Bsh1236I CGCG 1 cut(s) 310
BshFI GGCC 3 cut(s) 255, 285, 301
BshNI GGYRCC 1 cut(s) 147
BshVI ATCGAT 1 cut(s) 503
BsiHKAI GWGCWC 2 cut(s) 984, 1203
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 1 cut(s) 1232
BslI CCNNNNNNNGG 3 cut(s) 280, 599, 1426
BsmAI GTCTC 4 cut(s) 349, 896, 1094, 1223
BsmBI CGTCTC 1 cut(s) 349
BsmFI GGGAC 1 cut(s) 1232
BsmI GAATGC 1 cut(s) 1109
BsnI GGCC 3 cut(s) 255, 285, 301
Bso31I GGTCTC 1 cut(s) 1223
Bsp119I TTCGAA 1 cut(s) 853
Bsp120I GGGCCC 1 cut(s) 283
Bsp1286I GDGCHC 3 cut(s) 287, 984, 1203
BspANI GGCC 3 cut(s) 255, 285, 301
BspCNI CTCAG 5 cut(s) 532, 567, 628, 1338, 1381
BspDI ATCGAT 1 cut(s) 503
BspFNI CGCG 1 cut(s) 310
BspLI GGNNCC 5 cut(s) 149, 284, 285, 1176, 1260
BspPI GGATC 7 cut(s) 17, 50, 117, 365, 1169, 1182, 1184
BspT104I TTCGAA 1 cut(s) 853
BspT107I GGYRCC 1 cut(s) 147
BspTNI GGTCTC 1 cut(s) 1223
BsrDI GCAATG 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 44
BsrI ACTGG 4 cut(s) 460, 554, 914, 971
BssAI RCCGGY 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 296
BssNI GRCGYC 1 cut(s) 148
BssSI CACGAG 1 cut(s) 608
Bst2BI CACGAG 1 cut(s) 608
Bst2UI CCWGG 2 cut(s) 298, 899
Bst4CI ACNGT 2 cut(s) 475, 835
Bst6I CTCTTC 3 cut(s) 35, 135, 1355
BstACI GRCGYC 1 cut(s) 148
BstBAI YACGTR 1 cut(s) 1181
BstBI TTCGAA 1 cut(s) 853
BstC8I GCNNGC 7 cut(s) 46, 329, 792, 980, 984, 1253, 1466
BstDEI CTNAG 6 cut(s) 519, 575, 636, 773, 1325, 1389
BstENI CCTNNNNNAGG 1 cut(s) 1424
BstF5I GGATG 7 cut(s) 619, 754, 808, 1054, 1109, 1339, 1510
BstFNI CGCG 1 cut(s) 310
BstH2I RGCGCY 2 cut(s) 51, 151
BstHHI GCGC 3 cut(s) 50, 150, 321
BstMAI GTCTC 4 cut(s) 349, 896, 1094, 1223
BstMWI GCNNNNNNNGC 5 cut(s) 307, 316, 641, 1115, 1349
BstNI CCWGG 2 cut(s) 298, 899
BstNSI RCATGY 1 cut(s) 624
BstSCI CCNGG 2 cut(s) 296, 897
BstSFI CTRYAG 1 cut(s) 1598
BstSLI GKGCMC 1 cut(s) 287
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 3 cut(s) 1017, 1058, 1535
BstV2I GAAGAC 3 cut(s) 711, 1557, 1581
BstX2I RGATCY 2 cut(s) 875, 1174
BstXI CCANNNNNNTGG 1 cut(s) 444
BstYI RGATCY 2 cut(s) 875, 1174
Bsu15I ATCGAT 1 cut(s) 503
BsuI GTATCC 1 cut(s) 378
BsuRI GGCC 3 cut(s) 255, 285, 301
BsuTUI ATCGAT 1 cut(s) 503
BtrI CACGTC 1 cut(s) 335
BtsCI GGATG 7 cut(s) 619, 754, 808, 1054, 1109, 1339, 1510
BtsIMutI CAGTG 2 cut(s) 538, 962
Cac8I GCNNGC 7 cut(s) 46, 329, 792, 980, 984, 1253, 1466
CfoI GCGC 3 cut(s) 50, 150, 321
Cfr10I RCCGGY 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 283, 284
ClaI ATCGAT 1 cut(s) 503
CseI GACGC 1 cut(s) 796
Csp6I GTAC 1 cut(s) 406
CspCI CAANNNNNGTGG 2 cut(s) 1196, 1231
CviQI GTAC 1 cut(s) 406
DdeI CTNAG 6 cut(s) 519, 575, 636, 773, 1325, 1389
DinI GGCGCC 1 cut(s) 149
DraI TTTAAA 1 cut(s) 672
DrdI GACNNNNNNGTC 1 cut(s) 1583
DseDI GACNNNNNNGTC 1 cut(s) 1583
EaeI YGGCCR 2 cut(s) 253, 299
Eam1104I CTCTTC 3 cut(s) 35, 135, 1355
EarI CTCTTC 3 cut(s) 35, 135, 1355
EciI GGCGGA 2 cut(s) 370, 1562
Ecl136II GAGCTC 1 cut(s) 982
Eco24I GRGCYC 2 cut(s) 287, 984
Eco31I GGTCTC 1 cut(s) 1223
Eco32I GATATC 1 cut(s) 910
Eco53kI GAGCTC 1 cut(s) 982
Eco57I CTGAAG 2 cut(s) 705, 1219
Eco72I CACGTG 1 cut(s) 1181
EcoICRI GAGCTC 1 cut(s) 982
EcoNI CCTNNNNNAGG 1 cut(s) 1424
EcoO109I RGGNCCY 1 cut(s) 283
EcoRII CCWGG 2 cut(s) 296, 897
EcoRV GATATC 1 cut(s) 910
EcoT38I GRGCYC 2 cut(s) 287, 984
EgeI GGCGCC 1 cut(s) 149
EheI GGCGCC 1 cut(s) 149
Esp3I CGTCTC 1 cut(s) 349
FalI AAGNNNNNCTT 2 cut(s) 703, 735
FaqI GGGAC 1 cut(s) 1232
FbaI TGATCA 1 cut(s) 880
FblI GTMKAC 1 cut(s) 1126
Fnu4HI GCNGC 6 cut(s) 151, 154, 302, 1031, 1072, 1524
FokI GGATG 7 cut(s) 626, 761, 815, 1041, 1116, 1346, 1517
FriOI GRGCYC 2 cut(s) 287, 984
Fsp4HI GCNGC 6 cut(s) 151, 154, 302, 1031, 1072, 1524
FspBI CTAG 1 cut(s) 1421
GlaI GCGC 3 cut(s) 49, 149, 320
GluI GCNGC 6 cut(s) 151, 154, 302, 1031, 1072, 1524
GsuI CTGGAG 2 cut(s) 940, 1277
HaeII RGCGCY 2 cut(s) 51, 151
HaeIII GGCC 3 cut(s) 255, 285, 301
HapII CCGG 1 cut(s) 45
HgaI GACGC 1 cut(s) 796
HhaI GCGC 3 cut(s) 50, 150, 321
Hin1I GRCGYC 1 cut(s) 148
Hin6I GCGC 3 cut(s) 48, 148, 319
HinP1I GCGC 3 cut(s) 48, 148, 319
HincII GTYRAC 2 cut(s) 143, 1127
HindII GTYRAC 2 cut(s) 143, 1127
HindIII AAGCTT 2 cut(s) 1017, 1438
HinfI GANTC 6 cut(s) 168, 265, 448, 731, 839, 1239
HpaII CCGG 1 cut(s) 45
HphI GGTGA 5 cut(s) 5, 329, 457, 1457, 1484
Hpy166II GTNNAC 3 cut(s) 143, 465, 1127
Hpy188I TCNGA 9 cut(s) 167, 576, 724, 748, 817, 880, 1143, 1238, 1328
Hpy188III TCNNGA 2 cut(s) 53, 800
Hpy8I GTNNAC 3 cut(s) 143, 465, 1127
HpyAV CCTTC 6 cut(s) 114, 593, 1068, 1214, 1243, 1301
HpyCH4III ACNGT 2 cut(s) 475, 835
HpyCH4IV ACGT 3 cut(s) 334, 414, 1180
HpyCH4V TGCA 6 cut(s) 182, 419, 644, 806, 1135, 1409
HpyF10VI GCNNNNNNNGC 5 cut(s) 307, 316, 641, 1115, 1349
HpyF3I CTNAG 6 cut(s) 519, 575, 636, 773, 1325, 1389
HpySE526I ACGT 3 cut(s) 334, 414, 1180
Hsp92I GRCGYC 1 cut(s) 148
HspAI GCGC 3 cut(s) 48, 148, 319
KasI GGCGCC 1 cut(s) 147
KroI GCCGGC 1 cut(s) 44
KroNI GCCGGC 1 cut(s) 46
Ksp22I TGATCA 1 cut(s) 880
LmnI GCTCC 3 cut(s) 378, 955, 1258
Lsp1109I GCAGC 3 cut(s) 1017, 1058, 1535
LweI GCATC 5 cut(s) 412, 739, 793, 1063, 1330
MaeI CTAG 1 cut(s) 1421
MaeII ACGT 3 cut(s) 334, 414, 1180
MaeIII GTNAC 5 cut(s) 290, 335, 432, 545, 1472
MflI RGATCY 2 cut(s) 875, 1174
MhlI GDGCHC 3 cut(s) 287, 984, 1203
MluCI AATT 5 cut(s) 71, 83, 485, 811, 1453
MluI ACGCGT 1 cut(s) 308
Mly113I GGCGCC 1 cut(s) 148
MlyI GAGTC 2 cut(s) 274, 457
MreI CGCCGGCG 1 cut(s) 44
MroNI GCCGGC 1 cut(s) 44
MseI TTAA 6 cut(s) 480, 489, 663, 671, 1367, 1532
MslI CAYNNNNRTG 2 cut(s) 177, 442
MspA1I CMGCKG 2 cut(s) 1030, 1526
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 2 cut(s) 298, 899
Mva1269I GAATGC 1 cut(s) 1109
MvaI CCWGG 2 cut(s) 298, 899
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 5 cut(s) 307, 316, 641, 1115, 1349
NaeI GCCGGC 1 cut(s) 46
NarI GGCGCC 1 cut(s) 148
NgoMIV GCCGGC 1 cut(s) 44
NlaIV GGNNCC 5 cut(s) 149, 284, 285, 1176, 1260
NmuCI GTSAC 4 cut(s) 290, 335, 545, 1472
NspI RCATGY 1 cut(s) 624
NspV TTCGAA 1 cut(s) 853
PciI ACATGT 1 cut(s) 620
PctI GAATGC 1 cut(s) 1109
PdiI GCCGGC 1 cut(s) 46
PfeI GAWTC 4 cut(s) 168, 731, 839, 1239
PkrI GCNGC 6 cut(s) 152, 155, 303, 1032, 1073, 1525
PleI GAGTC 2 cut(s) 273, 456
PluTI GGCGCC 1 cut(s) 151
PmaCI CACGTG 1 cut(s) 1181
PmlI CACGTG 1 cut(s) 1181
PpsI GAGTC 2 cut(s) 273, 456
Ppu21I YACGTR 1 cut(s) 1181
PscI ACATGT 1 cut(s) 620
Psp124BI GAGCTC 1 cut(s) 984
Psp1406I AACGTT 1 cut(s) 414
Psp6I CCWGG 2 cut(s) 296, 897
PspCI CACGTG 1 cut(s) 1181
PspGI CCWGG 2 cut(s) 296, 897
PspN4I GGNNCC 5 cut(s) 149, 284, 285, 1176, 1260
PspOMI GGGCCC 1 cut(s) 283
PspPI GGNCC 2 cut(s) 283, 284
PsuI RGATCY 2 cut(s) 875, 1174
PvuII CAGCTG 1 cut(s) 1526
RsaI GTAC 1 cut(s) 407
RsaNI GTAC 1 cut(s) 406
RseI CAYNNNNRTG 2 cut(s) 177, 442
SacI GAGCTC 1 cut(s) 984
SalI GTCGAC 1 cut(s) 1125
SaqAI TTAA 6 cut(s) 480, 489, 663, 671, 1367, 1532
SatI GCNGC 6 cut(s) 151, 154, 302, 1031, 1072, 1524
Sau96I GGNCC 2 cut(s) 283, 284
SchI GAGTC 2 cut(s) 274, 457
ScrFI CCNGG 2 cut(s) 298, 899
SduI GDGCHC 3 cut(s) 287, 984, 1203
SfaNI GCATC 5 cut(s) 412, 739, 793, 1063, 1330
SfcI CTRYAG 1 cut(s) 1598
SfoI GGCGCC 1 cut(s) 149
SfuI TTCGAA 1 cut(s) 853
SgrAI CRCCGGYG 1 cut(s) 44
SmiMI CAYNNNNRTG 2 cut(s) 177, 442
SmlI CTYRAG 2 cut(s) 275, 1246
SmoI CTYRAG 2 cut(s) 275, 1246
Sse9I AATT 5 cut(s) 71, 83, 485, 811, 1453
SspDI GGCGCC 1 cut(s) 147
SspI AATATT 1 cut(s) 743
SspMI CTAG 1 cut(s) 1421
SstI GAGCTC 1 cut(s) 984
StyD4I CCNGG 2 cut(s) 296, 897
TaaI ACNGT 2 cut(s) 475, 835
TaiI ACGT 3 cut(s) 337, 417, 1183
TasI AATT 5 cut(s) 71, 83, 485, 811, 1453
TatI WGTACW 1 cut(s) 405
TauI GCSGC 3 cut(s) 153, 156, 304
TfiI GAWTC 4 cut(s) 168, 731, 839, 1239
Tru1I TTAA 6 cut(s) 480, 489, 663, 671, 1367, 1532
Tru9I TTAA 6 cut(s) 480, 489, 663, 671, 1367, 1532
TscAI CASTG 2 cut(s) 538, 969
TseFI GTSAC 4 cut(s) 290, 335, 545, 1472
TseI GCWGC 3 cut(s) 1030, 1071, 1523
Tsp45I GTSAC 4 cut(s) 290, 335, 545, 1472
TspDTI ATGAA 8 cut(s) 167, 556, 612, 795, 960, 1038, 1373, 1521
TspGWI ACGGA 1 cut(s) 216
TspRI CASTG 2 cut(s) 538, 969
XagI CCTNNNNNAGG 1 cut(s) 1424
XapI RAATTY 3 cut(s) 83, 811, 1453
XceI RCATGY 1 cut(s) 624
XcmI CCANNNNNNNNNTGG 1 cut(s) 294
XmiI GTMKAC 1 cut(s) 1126
XspI CTAG 1 cut(s) 1421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.