Rroxscaffold_3G00224170

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000025
Physical Location & Seq
Forward (+)
7310198 .. 7312612
2415 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224170.1

Sequence Viewer

Length: 1431 bp
ATGGAAGTGGGCGATGAAGAAGTGAGGGAGGAGACGGATGAAGAAGAGGATGACATAGTAATGGAGGAGATAGCTAAAGAAGAAAGAGAGGATGAAATAGCAAGCACACCAACATTTGGTGAATGGAAAACAAAATTATCGATGCCTCCTAGCAGCCAGGAGATGAAAGATAAACTGGAGAAAAGCAATGAAAACATGAAGGAAGTGTTGGACAGCCTTGACAAAACTTTAAAATCAAAAATGAATGAGGAGAATTGGGAAAGTGCTCAAAAAATGGTAAAAAGGCTGAGGAGGATTCAAAAGAGATTGAAGAAGAGGATCAGCACGCTTCGACAAAAGATAAAGGCATTGGAGGATGAGAAATTTGAACAATATGAGGATGAAAGTGATAATCCTACCGAGGGGCAGCAGCTACAAATGGTAATTTACCAAGAGCAAGAGCAAGGAAATGTGAACAACGATGCACGGACCGGTAAGTCCGAAATGGACAAGGCAACTTCGGTGATTATTGAATGCCTTGAAGACTTGAAGAAAGGGGAAGAGAAAGGAAAGAAAGCAGAAAATCCGGTGATAATGAAACCGAGAGGGGAGAATAGAAAGGACACAAAGGACTCCAGCAAATACATGTACGACACTCCTCCAGGAATAAAAGGGAAAAATGCTCTTAAGCGATCTCCATCAAAAGCTGCATATAGGCTGCATGGAGTCAAGTGCACTAGGATACATTGGAAAAACTTATCTCCCAAAGAGCAAGAAATGATACAAAATGAACAGTTTTGGGATGGAGGACAGTTTGGGAGTGTCTCAAAGCTCGATGTGAAAGCTGCGCGAAGGATCGTCAATAAATTCCAATACATAATCAAAGGCGATTTAGAGAAATCGAGGCATTACAAACCAAGGAATCATGACGACATATGTGTTGGTAAGTTGAACAAGAAGGCAAAAGAATGGATTCATTACAATCCAATGCGCAAAAGAACAAATCTGAAAAAAGCAAAGGCTACAAGAATGCCAAAGCGAGTGGTAGAAGCGGTGACAACGTGGATGCTTGATGTGAAAAAGTTGCACAAGCGAGAACAAGGAGAGGAGGCTAAAATTTGTCGAGTGGAACAGAAGACAACAATATATGAGGAAATACAGATTGATGAAAATGCAGAGAAAACAATCGCTTGGATAAAAAAAACTGATGTGGATAACTTAAAGCTGGTTGAAGACATGTTGGACTGCGGACCTTATATCCTACACTATATAGAGAATATAGCAAAGAACAGGCTGCAGATAAGCAAAGCAGATAGAGGCGTTTTGGTTGACAAGGTTTTGGGATTAGAAAGAGAAATCAAAGAAAGCTTGAAGAACATGAGAAGAACCATGGTGGAGAGGTTTCTTAACCATGACGAGGGCTGGTATTCGAAAGTAGGTTACACTCGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

476

Amino Acids

55.85

Weight (kDa)

8.83

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000025)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G31370 AT1G31380 AT1G31390 AT1G31400 AT2G01790 AT2G05400 AT2G05400 AT2G05400 AT2G05410 AT2G05410 AT2G05420 AT2G05430 AT2G42455 AT2G42460 AT2G42465 AT2G42470 AT2G42475 AT2G42480 AT3G27040 AT3G29580 AT3G44790 AT3G44800 AT3G44805 AT3G58200 AT3G58210 AT3G58220 AT3G58220 AT3G58220 AT3G58220 AT3G58220 AT3G58230 AT3G58240 AT3G58250 AT3G58260 AT3G58270 AT3G58270 AT3G58270 AT3G58280 AT3G58290 AT3G58290 AT3G58290 AT3G58300 AT3G58320 AT3G58330 AT3G58340 AT3G58340 AT3G58350 AT3G58350 AT3G58360 AT3G58370 AT3G58380 AT3G58400 AT3G58410 AT3G58410 AT3G58430 AT3G58430 AT3G58440 AT5G03550
fragaria_vesca FvH4_2g00084 FvH4_2g15701 FvH4_2g24334 FvH4_3g23322 FvH4_3g23322 FvH4_3g23322 FvH4_3g23482 FvH4_3g23482 FvH4_3g23482 FvH4_3g23491 FvH4_3g23492 FvH4_3g23510 FvH4_3g23520 FvH4_3g23520 FvH4_3g23520 FvH4_3g23580 FvH4_3g38842 FvH4_4g10396 FvH4_5g29370 FvH4_5g32130 FvH4_7g04570 FvH4_7g04571 FvH4_7g04741 FvH4_7g04741 FvH4_7g04750 FvH4_7g04750 FvH4_7g04760 FvH4_7g04760 FvH4_7g04760 FvH4_7g04760 FvH4_7g04760 FvH4_7g04770 FvH4_7g04770 FvH4_7g04770
malus_domestica MD00G1065000.v1.1 MD00G1065300.v1.1 MD02G1267400.v1.1 MD02G1267600.v1.1 MD02G1267700.v1.1 MD02G1267800.v1.1 MD02G1268100.v1.1 MD02G1268300.v1.1 MD02G1268400.v1.1 MD02G1268500.v1.1 MD03G1193600.v1.1 MD05G1071400.v1.1 MD07G1051000.v1.1 MD07G1051100.v1.1 MD07G1051200.v1.1 MD07G1051300.v1.1 MD07G1051500.v1.1 MD07G1051700.v1.1 MD07G1051800.v1.1 MD07G1085400.v1.1 MD07G1085500.v1.1 MD11G1177200.v1.1 MD11G1209800.v1.1 MD11G1209900.v1.1 MD11G1210000.v1.1 MD12G1048100.v1.1 MD12G1048600.v1.1 MD14G1046700.v1.1 MD14G1047400.v1.1
prunus_persica Prupe.2G051200_v2.0.a1 Prupe.2G052500_v2.0.a1 Prupe.2G052500_v2.0.a1 Prupe.2G052600_v2.0.a1 Prupe.2G052600_v2.0.a1 Prupe.2G052700_v2.0.a1 Prupe.2G052800_v2.0.a1 Prupe.2G052900_v2.0.a1 Prupe.2G052900_v2.0.a1 Prupe.2G053100_v2.0.a1 Prupe.2G053300_v2.0.a1 Prupe.2G054800_v2.0.a1 Prupe.2G054900_v2.0.a1 Prupe.2G054900_v2.0.a1 Prupe.2G054900_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.2G069300_v2.0.a1 Prupe.4G223300_v2.0.a1 Prupe.4G223300_v2.0.a1
pyrus_communis pycom01g04720 pycom02g22950 pycom02g22960 pycom02g22970 pycom02g22990 pycom02g23000 pycom02g23010 pycom03g14600 pycom03g14610 pycom05g06150 pycom07g03820 pycom07g03830 pycom07g03850 pycom07g03860 pycom07g03880 pycom07g03890 pycom07g03900 pycom07g04000 pycom07g04010 pycom11g18540 pycom11g18560 pycom12g04190 pycom17g19100
rosa_chinensis RchiOBHm_Chr0c19g0500051 RchiOBHm_Chr1g0330011 RchiOBHm_Chr1g0330031 RchiOBHm_Chr1g0330041 RchiOBHm_Chr1g0330121 RchiOBHm_Chr1g0330141 RchiOBHm_Chr1g0330151 RchiOBHm_Chr1g0330181 RchiOBHm_Chr1g0330191 RchiOBHm_Chr1g0330201 RchiOBHm_Chr1g0330211 RchiOBHm_Chr1g0330221 RchiOBHm_Chr1g0367471 RchiOBHm_Chr2g0113311 RchiOBHm_Chr2g0148281 RchiOBHm_Chr4g0400061 RchiOBHm_Chr4g0437571 RchiOBHm_Chr5g0041361 RchiOBHm_Chr5g0041421 RchiOBHm_Chr5g0041481 RchiOBHm_Chr5g0041491 RchiOBHm_Chr5g0041501 RchiOBHm_Chr5g0041511 RchiOBHm_Chr5g0042491 RchiOBHm_Chr5g0042501 RchiOBHm_Chr6g0263551 RchiOBHm_Chr6g0286221 RchiOBHm_Chr7g0228171 RchiOBHm_Chr7g0231391 RchiOBHm_Chr7g0231401
rosa_laevigata RLG00000000870 RLG00000001420 RLG00000001582 RLG00000001602 RLG00000001700 RLG00000002476 RLG00000005787 RLG00000007689 RLG00000008446 RLG00000008811 RLG00000008812 RLG00000009013 RLG00000009942 RLG00000012752 RLG00000013511 RLG00000014053 RLG00000015257 RLG00000015258 RLG00000016149 RLG00000016691 RLG00000018661 RLG00000018662 RLG00000020991 RLG00000020992 RLG00000020993 RLG00000027309 RLG00000028568 RLG00000029119 RLG00000029371 RLG00000029563 RLG00000029818 RLG00000029819 RLG00000029821 RLG00000029822 RLG00000029824 RLG00000029827 RLG00000029828 RLG00000029829 RLG00000029841 RLG00000029843 RLG00000032676 RLG00000033366 RLG00000033367 RLG00000034023 RLG00000034066 RLG00000034072 RLG00000034073 RLG00000034074 RLG00000034130 RLG00000034133 RLG00000035487 RLG00000035488 RLG00000035793
rosa_multiflora Rmu_co8241405.1_g000001 Rmu_co8251033.1_g000001 Rmu_co8297611.1_g000001 Rmu_co8346639.1_g000001 Rmu_co8405917.1_g000001 Rmu_sc0000045.1_g000044 Rmu_sc0000061.1_g000032 Rmu_sc0000068.1_g000021 Rmu_sc0000068.1_g000022 Rmu_sc0000415.1_g000001 Rmu_sc0000499.1_g000003 Rmu_sc0000594.1_g000020 Rmu_sc0000673.1_g000007 Rmu_sc0000908.1_g000004 Rmu_sc0001123.1_g000013 Rmu_sc0001123.1_g000014 Rmu_sc0001167.1_g000026 Rmu_sc0001598.1_g000011 Rmu_sc0001696.1_g000003 Rmu_sc0001696.1_g000011 Rmu_sc0001696.1_g000019 Rmu_sc0001696.1_g000020 Rmu_sc0003007.1_g000016 Rmu_sc0003007.1_g000029 Rmu_sc0003051.1_g000010 Rmu_sc0003396.1_g000029 Rmu_sc0004798.1_g000020 Rmu_sc0005375.1_g000016 Rmu_sc0005375.1_g000017 Rmu_sc0005659.1_g000033 Rmu_sc0005659.1_g000034 Rmu_sc0006311.1_g000011 Rmu_sc0008249.1_g000002 Rmu_sc0008249.1_g000018 Rmu_sc0008600.1_g000014 Rmu_sc0009365.1_g000010 Rmu_sc0009365.1_g000022 Rmu_sc0009365.1_g000025 Rmu_sc0011112.1_g000008 Rmu_sc0011112.1_g000009 Rmu_sc0012031.1_g000020 Rmu_sc0013350.1_g000014 Rmu_sc0020359.1_g000004 Rmu_sc0021997.1_g000003 Rmu_sc0021997.1_g000004 Rmu_sc0023610.1_g000002 Rmu_sc0023611.1_g000001 Rmu_sc0028894.1_g000001 Rmu_sc0031050.1_g000001 Rmu_sc0041109.1_g000001 Rmu_ssc0000087.1_g000050 Rmu_ssc0000087.1_g000051 Rmu_ssc0000087.1_g000052 Rmu_ssc0000295.1_g000058 Rmu_ssc0000343.1_g000031 Rmu_ssc0000423.1_g000015 Rmu_ssc0000470.1_g000005 Rmu_ssc0000470.1_g000006
rosa_roxburghii Rroxscaffold_1G00005900 Rroxscaffold_1G00005910 Rroxscaffold_1G00012600 Rroxscaffold_1G00016860 Rroxscaffold_1G00032110 Rroxscaffold_1G00038140 Rroxscaffold_1G00038200 Rroxscaffold_1G00039020 Rroxscaffold_1G00039030 Rroxscaffold_1G00039080 Rroxscaffold_1G00039090 Rroxscaffold_1G00039270 Rroxscaffold_2G00097120 Rroxscaffold_2G00097130 Rroxscaffold_2G00137700 Rroxscaffold_2G00151740 Rroxscaffold_2G00151750 Rroxscaffold_3G00224160 Rroxscaffold_3G00224170 Rroxscaffold_3G00226080 Rroxscaffold_3G00226090 Rroxscaffold_3G00229350 Rroxscaffold_3G00231340 Rroxscaffold_4G00291390 Rroxscaffold_4G00316220 Rroxscaffold_4G00316230 Rroxscaffold_4G00320040 Rroxscaffold_4G00320050 Rroxscaffold_4G00320120 Rroxscaffold_4G00320140 Rroxscaffold_4G00320180 Rroxscaffold_4G00320270 Rroxscaffold_4G00320280 Rroxscaffold_4G00320290 Rroxscaffold_4G00320430 Rroxscaffold_4G00321910 Rroxscaffold_5G00348730 Rroxscaffold_5G00355020 Rroxscaffold_5G00355080 Rroxscaffold_5G00357490 Rroxscaffold_5G00376500 Rroxscaffold_5G00376510 Rroxscaffold_7G00179590 Rroxscaffold_7G00179600 Rroxscaffold_7G00198610
rosa_rugosa Rorug01G0085400 Rorug01G0085400 Rorug01G0085400 Rorug01G0085400 Rorug01G0085400 Rorug01G0085400 Rorug01G0086300 Rorug01G0086500 Rorug01G0087000 Rorug01G0087100 Rorug01G0087600 Rorug01G0087700 Rorug01G0087800 Rorug01G0087800 Rorug01G0302500 Rorug02G0249300 Rorug02G0249300 Rorug02G0249400 Rorug03G0189000 Rorug04G0181800 Rorug04G0283800.1 Rorug04G0283900.1 Rorug05G0043500 Rorug05G0191800 Rorug05G0191900 Rorug05G0192800 Rorug05G0192900 Rorug05G0193000 Rorug05G0201000 Rorug05G0201100 Rorug06G0173900 Rorug06G0173900 Rorug07G0009800 Rorug07G0246300.1 Rorug07G0246400
rosa_samantha Rh1AG103600 Rh1AG104800 Rh1AG105200 Rh1AG105300 Rh1AG105500 Rh1BG082000 Rh1BG082200 Rh1BG082300 Rh1BG082900 Rh1BG083000 Rh1BG083300 Rh1BG083500 Rh1BG083600 Rh1BG083800 Rh1BG083900 Rh1BG084000 Rh1BG084100 Rh1BG084200 Rh1BG092200 Rh1BG275300 Rh1CG098700 Rh1CG098800 Rh1CG100300 Rh1CG100400 Rh1CG100600 Rh1CG100900 Rh1CG101000 Rh1CG101700 Rh1DG066900 Rh1DG067000 Rh1DG106000 Rh1DG107600 Rh1DG107800 Rh1DG108100 Rh1DG108200 Rh1DG108600 Rh1DG108700 Rh1DG108900 Rh1DG109000 Rh1DG109100 Rh1DG109300 Rh1DG109400 Rh1DG109500 Rh1DG109700 Rh1DG109800 Rh1DG173900 Rh2AG270300 Rh2AG398900 Rh2CG245000 Rh2CG260700 Rh2CG278600 Rh2CG342400 Rh2CG385700 Rh3DG197200 Rh3DG197300 Rh4AG015100 Rh4BG347400 Rh4DG360400 Rh5AG278600 Rh5AG278700 Rh5AG286900 Rh5AG287000 Rh5BG282900 Rh5BG283000 Rh5BG283100 Rh5BG291400 Rh5CG314900 Rh5CG315100 Rh5CG315400 Rh5CG315700 Rh5CG315900 Rh5CG316000 Rh5CG323600 Rh5CG323700 Rh5DG291400 Rh5DG292300 Rh5DG292500 Rh5DG292700 Rh5DG292800 Rh5DG292900 Rh5DG301100 Rh5DG301200 Rh5DG301400 Rh5DG350900 Rh6BG407700 Rh6CG294900 Rh6DG286900 Rh7AG400400 Rh7AG420600 Rh7BG381700 Rh7BG395000 Rh7CG418600 Rh7CG440700 Rh7DG396500 Rh7DG413200
rosa_wichuraiana Rw1G003300 Rw1G008240 Rw1G008250 Rw1G008270 Rw1G008330 Rw1G008340 Rw1G008350 Rw1G008360 Rw1G008370 Rw1G008810 Rw1G021140 Rw3G020650 Rw5G026150 Rw5G026200 Rw5G026240 Rw5G026250 Rw5G026650 Rw5G030820 Rw7G006630 Rw7G030060 Rw7G034700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 475
Acc16I TGCGCA 1 cut(s) 971
AccB7I CCANNNNNTGG 1 cut(s) 116
AccII CGCG 1 cut(s) 829
AciI CCGC 2 cut(s) 1031, 1227
AclWI GGATC 2 cut(s) 326, 842
AcsI RAATTY 3 cut(s) 362, 845, 1095
AfaI GTAC 1 cut(s) 629
AfiI CCNNNNNNNGG 3 cut(s) 116, 401, 1396
AflII CTTAAG 1 cut(s) 665
AflIII ACRYGT 2 cut(s) 624, 1215
AgeI ACCGGT 1 cut(s) 470
AgsI TTSAA 9 cut(s) 299, 310, 368, 512, 521, 529, 931, 1211, 1351
AjnI CCWGG 2 cut(s) 156, 640
AjuI GAANNNNNNNTTGG 2 cut(s) 191, 223
AluBI AGCT 7 cut(s) 74, 412, 686, 811, 824, 1204, 1347
AluI AGCT 7 cut(s) 74, 412, 686, 811, 824, 1204, 1347
Alw21I GWGCWC 2 cut(s) 268, 716
Alw26I GTCTC 2 cut(s) 26, 808
Alw44I GTGCAC 1 cut(s) 712
AlwI GGATC 2 cut(s) 326, 842
ApaLI GTGCAC 1 cut(s) 712
ApeKI GCWGC 7 cut(s) 153, 406, 409, 686, 697, 824, 1273
ApoI RAATTY 3 cut(s) 362, 845, 1095
AsiGI ACCGGT 1 cut(s) 470
Asp700I GAANNNNTTC 1 cut(s) 951
AspLEI GCGC 2 cut(s) 829, 972
AspS9I GGNCC 2 cut(s) 468, 1229
AsuHPI GGTGA 4 cut(s) 131, 514, 580, 1045
AsuII TTCGAA 1 cut(s) 1409
AvaII GGWCC 2 cut(s) 468, 1229
BaeGI GKGCMC 1 cut(s) 716
BbsI GAAGAC 3 cut(s) 528, 1121, 1218
Bbv12I GWGCWC 2 cut(s) 268, 716
BbvCI CCTCAGC 1 cut(s) 287
BbvI GCAGC 7 cut(s) 165, 418, 421, 673, 684, 811, 1260
BccI CCATC 2 cut(s) 685, 776
BciT130I CCWGG 2 cut(s) 158, 642
BciVI GTATCC 1 cut(s) 714
BcoDI GTCTC 2 cut(s) 26, 808
BfaI CTAG 2 cut(s) 150, 717
BfmI CTRYAG 1 cut(s) 1274
BfrI CTTAAG 1 cut(s) 665
BfuI GTATCC 1 cut(s) 714
BisI GCNGC 7 cut(s) 154, 407, 410, 687, 698, 825, 1274
BlsI GCNGC 7 cut(s) 155, 408, 411, 688, 699, 826, 1275
Bme1390I CCNGG 2 cut(s) 158, 642
Bme18I GGWCC 2 cut(s) 468, 1229
BmgT120I GGNCC 2 cut(s) 468, 1229
BmrFI CCNGG 2 cut(s) 158, 642
BmsI GCATC 3 cut(s) 132, 451, 1035
BpiI GAAGAC 3 cut(s) 528, 1121, 1218
BpmI CTGGAG 3 cut(s) 197, 598, 624
Bpu10I CCTNAGC 1 cut(s) 287
Bpu14I TTCGAA 1 cut(s) 1409
Bsa29I ATCGAT 1 cut(s) 140
BsaBI GATNNNNATC 1 cut(s) 676
BsaJI CCNNGG 3 cut(s) 399, 896, 1368
BsaWI WCCGGW 2 cut(s) 470, 565
Bsc4I CCNNNNNNNGG 3 cut(s) 116, 401, 1396
Bse118I RCCGGY 1 cut(s) 470
Bse1I ACTGG 1 cut(s) 180
Bse3DI GCAATG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 676
BseBI CCWGG 2 cut(s) 158, 642
BseCI ATCGAT 1 cut(s) 140
BseDI CCNNGG 3 cut(s) 399, 896, 1368
BseGI GGATG 7 cut(s) 43, 55, 97, 361, 385, 787, 1050
BseJI GATNNNNATC 1 cut(s) 676
BseLI CCNNNNNNNGG 3 cut(s) 116, 401, 1396
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 6 cut(s) 44, 80, 263, 304, 627, 1100
BseSI GKGCMC 1 cut(s) 716
BseXI GCAGC 7 cut(s) 165, 418, 421, 673, 684, 811, 1260
Bsh1236I CGCG 1 cut(s) 829
BshTI ACCGGT 1 cut(s) 470
BshVI ATCGAT 1 cut(s) 140
BsiHKAI GWGCWC 2 cut(s) 268, 716
BsiSI CCGG 2 cut(s) 471, 566
BslI CCNNNNNNNGG 3 cut(s) 116, 401, 1396
BsmAI GTCTC 2 cut(s) 26, 808
BsmBI CGTCTC 1 cut(s) 26
BsmI GAATGC 2 cut(s) 518, 1014
Bsp119I TTCGAA 1 cut(s) 1409
Bsp1286I GDGCHC 2 cut(s) 268, 716
Bsp143I GATC 3 cut(s) 318, 671, 834
Bsp19I CCATGG 1 cut(s) 1368
BspACI CCGC 2 cut(s) 1031, 1227
BspCNI CTCAG 1 cut(s) 279
BspDI ATCGAT 1 cut(s) 140
BspFNI CGCG 1 cut(s) 829
BspHI TCATGA 1 cut(s) 904
BspMAI CTGCAG 1 cut(s) 1278
BspPI GGATC 2 cut(s) 326, 842
BspT104I TTCGAA 1 cut(s) 1409
BspTI CTTAAG 1 cut(s) 665
BsrDI GCAATG 1 cut(s) 193
BsrFI RCCGGY 1 cut(s) 470
BsrI ACTGG 1 cut(s) 180
BssAI RCCGGY 1 cut(s) 470
BssECI CCNNGG 3 cut(s) 399, 896, 1368
BssMI GATC 3 cut(s) 318, 671, 834
BssT1I CCWWGG 2 cut(s) 896, 1368
Bst2UI CCWGG 2 cut(s) 158, 642
Bst4CI ACNGT 2 cut(s) 774, 792
Bst6I CTCTTC 3 cut(s) 39, 308, 534
BstAFI CTTAAG 1 cut(s) 665
BstBI TTCGAA 1 cut(s) 1409
BstC8I GCNNGC 2 cut(s) 103, 326
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 1368
BstF5I GGATG 7 cut(s) 43, 55, 97, 361, 385, 787, 1050
BstFNI CGCG 1 cut(s) 829
BstHHI GCGC 2 cut(s) 829, 972
BstKTI GATC 3 cut(s) 321, 674, 837
BstMAI GTCTC 2 cut(s) 26, 808
BstMBI GATC 3 cut(s) 318, 671, 834
BstNI CCWGG 2 cut(s) 158, 642
BstNSI RCATGY 2 cut(s) 628, 1219
BstSCI CCNGG 2 cut(s) 156, 640
BstSFI CTRYAG 1 cut(s) 1274
BstSLI GKGCMC 1 cut(s) 716
BstUI CGCG 1 cut(s) 829
BstV1I GCAGC 7 cut(s) 165, 418, 421, 673, 684, 811, 1260
BstV2I GAAGAC 3 cut(s) 528, 1121, 1218
Bsu15I ATCGAT 1 cut(s) 140
BsuI GTATCC 1 cut(s) 714
BsuTUI ATCGAT 1 cut(s) 140
BtgI CCRYGG 1 cut(s) 1368
BtgZI GCGATG 1 cut(s) 27
BtsCI GGATG 7 cut(s) 43, 55, 97, 361, 385, 787, 1050
Cac8I GCNNGC 2 cut(s) 103, 326
CciI TCATGA 1 cut(s) 904
CfoI GCGC 2 cut(s) 829, 972
Cfr10I RCCGGY 1 cut(s) 470
Cfr13I GGNCC 2 cut(s) 468, 1229
ClaI ATCGAT 1 cut(s) 140
CpoI CGGWCCG 1 cut(s) 468
Csp6I GTAC 1 cut(s) 628
CspAI ACCGGT 1 cut(s) 470
CspCI CAANNNNNGTGG 2 cut(s) 1002, 1037
CspI CGGWCCG 1 cut(s) 468
CviAII CATG 8 cut(s) 196, 625, 701, 905, 1216, 1357, 1369, 1391
CviQI GTAC 1 cut(s) 628
DdeI CTNAG 1 cut(s) 287
DpnI GATC 3 cut(s) 320, 673, 836
DpnII GATC 3 cut(s) 318, 671, 834
DraI TTTAAA 1 cut(s) 231
DrdI GACNNNNNNGTC 1 cut(s) 475
DseDI GACNNNNNNGTC 1 cut(s) 475
Eam1104I CTCTTC 3 cut(s) 39, 308, 534
EarI CTCTTC 3 cut(s) 39, 308, 534
Eco130I CCWWGG 2 cut(s) 896, 1368
Eco47I GGWCC 2 cut(s) 468, 1229
EcoRII CCWGG 2 cut(s) 156, 640
EcoT14I CCWWGG 2 cut(s) 896, 1368
ErhI CCWWGG 2 cut(s) 896, 1368
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 8 cut(s) 199, 628, 704, 908, 1219, 1360, 1372, 1394
FatI CATG 8 cut(s) 195, 624, 700, 904, 1215, 1356, 1368, 1390
FauNDI CATATG 1 cut(s) 914
Fnu4HI GCNGC 7 cut(s) 154, 407, 410, 687, 698, 825, 1274
FokI GGATG 7 cut(s) 50, 62, 104, 368, 392, 794, 1057
Fsp4HI GCNGC 7 cut(s) 154, 407, 410, 687, 698, 825, 1274
FspBI CTAG 2 cut(s) 150, 717
FspI TGCGCA 1 cut(s) 971
GlaI GCGC 2 cut(s) 828, 971
GluI GCNGC 7 cut(s) 154, 407, 410, 687, 698, 825, 1274
GsuI CTGGAG 3 cut(s) 197, 598, 624
HapII CCGG 2 cut(s) 471, 566
HhaI GCGC 2 cut(s) 829, 972
Hin1II CATG 8 cut(s) 199, 628, 704, 908, 1219, 1360, 1372, 1394
Hin6I GCGC 2 cut(s) 827, 970
HinP1I GCGC 2 cut(s) 827, 970
HincII GTYRAC 1 cut(s) 1309
HindII GTYRAC 1 cut(s) 1309
HindIII AAGCTT 1 cut(s) 1345
HinfI GANTC 5 cut(s) 295, 611, 705, 901, 952
HpaII CCGG 2 cut(s) 471, 566
HphI GGTGA 4 cut(s) 131, 514, 580, 1045
Hpy166II GTNNAC 3 cut(s) 454, 714, 1309
Hpy188I TCNGA 2 cut(s) 481, 987
Hpy188III TCNNGA 1 cut(s) 905
Hpy8I GTNNAC 3 cut(s) 454, 714, 1309
HpyAV CCTTC 3 cut(s) 193, 825, 931
HpyCH4III ACNGT 2 cut(s) 774, 792
HpyCH4IV ACGT 1 cut(s) 1040
HpyCH4V TGCA 7 cut(s) 464, 689, 700, 714, 1066, 1154, 1276
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 1 cut(s) 1040
Hsp92II CATG 8 cut(s) 199, 628, 704, 908, 1219, 1360, 1372, 1394
HspAI GCGC 2 cut(s) 827, 970
Kzo9I GATC 3 cut(s) 318, 671, 834
Lsp1109I GCAGC 7 cut(s) 165, 418, 421, 673, 684, 811, 1260
LweI GCATC 3 cut(s) 132, 451, 1035
MaeI CTAG 2 cut(s) 150, 717
MaeII ACGT 1 cut(s) 1040
MaeIII GTNAC 2 cut(s) 1033, 1418
MalI GATC 3 cut(s) 320, 673, 836
MboI GATC 3 cut(s) 318, 671, 834
MhlI GDGCHC 2 cut(s) 268, 716
MluCI AATT 6 cut(s) 134, 253, 362, 423, 845, 1095
MlyI GAGTC 2 cut(s) 605, 714
MmeI TCCRAC 2 cut(s) 189, 1200
MroXI GAANNNNTTC 1 cut(s) 951
MseI TTAA 4 cut(s) 230, 666, 1199, 1386
MslI CAYNNNNRTG 1 cut(s) 59
MspCI CTTAAG 1 cut(s) 665
MspI CCGG 2 cut(s) 471, 566
MspR9I CCNGG 2 cut(s) 158, 642
Mva1269I GAATGC 2 cut(s) 518, 1014
MvaI CCWGG 2 cut(s) 158, 642
MvnI CGCG 1 cut(s) 829
NcoI CCATGG 1 cut(s) 1368
NdeI CATATG 1 cut(s) 914
NdeII GATC 3 cut(s) 318, 671, 834
NlaIII CATG 8 cut(s) 199, 628, 704, 908, 1219, 1360, 1372, 1394
NmuCI GTSAC 1 cut(s) 1033
NsbI TGCGCA 1 cut(s) 971
NspI RCATGY 2 cut(s) 628, 1219
NspV TTCGAA 1 cut(s) 1409
PagI TCATGA 1 cut(s) 904
PciI ACATGT 2 cut(s) 624, 1215
PctI GAATGC 2 cut(s) 518, 1014
PdmI GAANNNNTTC 1 cut(s) 951
PfeI GAWTC 3 cut(s) 295, 901, 952
PflMI CCANNNNNTGG 1 cut(s) 116
PfoI TCCNGGA 1 cut(s) 640
PinAI ACCGGT 1 cut(s) 470
PkrI GCNGC 7 cut(s) 155, 408, 411, 688, 699, 826, 1275
PleI GAGTC 2 cut(s) 605, 713
PpsI GAGTC 2 cut(s) 605, 713
PscI ACATGT 2 cut(s) 624, 1215
Psp6I CCWGG 2 cut(s) 156, 640
PspGI CCWGG 2 cut(s) 156, 640
PspPI GGNCC 2 cut(s) 468, 1229
PstI CTGCAG 1 cut(s) 1278
RsaI GTAC 1 cut(s) 629
RsaNI GTAC 1 cut(s) 628
RseI CAYNNNNRTG 1 cut(s) 59
Rsr2I CGGWCCG 1 cut(s) 468
RsrII CGGWCCG 1 cut(s) 468
SaqAI TTAA 4 cut(s) 230, 666, 1199, 1386
SatI GCNGC 7 cut(s) 154, 407, 410, 687, 698, 825, 1274
Sau3AI GATC 3 cut(s) 318, 671, 834
Sau96I GGNCC 2 cut(s) 468, 1229
SchI GAGTC 2 cut(s) 605, 714
ScrFI CCNGG 2 cut(s) 158, 642
SduI GDGCHC 2 cut(s) 268, 716
SfaNI GCATC 3 cut(s) 132, 451, 1035
SfcI CTRYAG 1 cut(s) 1274
SfuI TTCGAA 1 cut(s) 1409
SinI GGWCC 2 cut(s) 468, 1229
SmiMI CAYNNNNRTG 1 cut(s) 59
SmlI CTYRAG 1 cut(s) 665
SmoI CTYRAG 1 cut(s) 665
Sse9I AATT 6 cut(s) 134, 253, 362, 423, 845, 1095
SsiI CCGC 2 cut(s) 1031, 1227
SspMI CTAG 2 cut(s) 150, 717
StyD4I CCNGG 2 cut(s) 156, 640
StyI CCWWGG 2 cut(s) 896, 1368
TaaI ACNGT 2 cut(s) 774, 792
TaiI ACGT 1 cut(s) 1043
TaqI TCGA 6 cut(s) 140, 331, 813, 881, 1102, 1409
TasI AATT 6 cut(s) 134, 253, 362, 423, 845, 1095
TfiI GAWTC 3 cut(s) 295, 901, 952
Tru1I TTAA 4 cut(s) 230, 666, 1199, 1386
Tru9I TTAA 4 cut(s) 230, 666, 1199, 1386
TseFI GTSAC 1 cut(s) 1033
TseI GCWGC 7 cut(s) 153, 406, 409, 686, 697, 824, 1273
Tsp45I GTSAC 1 cut(s) 1033
TspGWI ACGGA 2 cut(s) 50, 481
Van91I CCANNNNNTGG 1 cut(s) 116
Vha464I CTTAAG 1 cut(s) 665
VneI GTGCAC 1 cut(s) 712
VpaK11BI GGWCC 2 cut(s) 468, 1229
XapI RAATTY 3 cut(s) 362, 845, 1095
XceI RCATGY 2 cut(s) 628, 1219
XmnI GAANNNNTTC 1 cut(s) 951
XspI CTAG 2 cut(s) 150, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.