AT3G43415

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000349
Physical Location & Seq
Reverse (-)
15342812 .. 15343309
498 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G43415.1

Sequence Viewer

Length: 369 bp
ATGAATGCATATCTATCATTGAAAGCAAGAGGCAAACAGATCCTTATTGATACGGTCGATCAGATTAGTAAACTTCCAGATAATGTGTTGGTCATGATCCTCAAAGAAATGTTAACAGAAGATGCGGTCAAAACAAGTGTCTTGTCTAAAAGATGGAAGACTGTATGGAAGCAAGTGCCATATGTCTTGTTTGATATGCAAAAATCTTTCTTAACAATTATGGAACCTTTGCCCACTCATTCTAATCGTGTTGCCAAACTGATAACCGAGGATGTATCAGTTAATATGAAAACCTTAGATAACTCGAGGCAAACAACAATCTCAGATTATAAATCCATGGTGGATAAGACAACAGGAAAAACTCTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD LRR_2

Protein Analysis

122

Amino Acids

13.95

Weight (kDa)

9.49

Isoelectric Point (pI)

29.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 22 - 60 2.5e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 330
AciI CCGC 1 cut(s) 125
AclWI GGATC 2 cut(s) 34, 91
AgsI TTSAA 1 cut(s) 22
AlwI GGATC 2 cut(s) 34, 91
Ama87I CYCGRG 1 cut(s) 304
ArsI GACNNNNNNTTYG 2 cut(s) 123, 155
AvaI CYCGRG 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 164
BccI CCATC 1 cut(s) 147
BmeT110I CYCGRG 1 cut(s) 304
BmiI GGNNCC 1 cut(s) 225
BmsI GCATC 1 cut(s) 112
BpiI GAAGAC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 267, 336
BseDI CCNNGG 2 cut(s) 267, 336
BseGI GGATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 336
Bsh1285I CGRYCG 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 57
BsiHKCI CYCGRG 1 cut(s) 304
BsmI GAATGC 1 cut(s) 10
BsoBI CYCGRG 1 cut(s) 304
Bsp143I GATC 3 cut(s) 39, 58, 96
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 1 cut(s) 125
BspCNI CTCAG 1 cut(s) 335
BspHI TCATGA 1 cut(s) 93
BspLI GGNNCC 1 cut(s) 225
BspPI GGATC 2 cut(s) 34, 91
BssECI CCNNGG 2 cut(s) 267, 336
BssMI GATC 3 cut(s) 39, 58, 96
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 2 cut(s) 55, 163
BstDEI CTNAG 2 cut(s) 295, 322
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 3 cut(s) 42, 61, 99
BstMBI GATC 3 cut(s) 39, 58, 96
BstMCI CGRYCG 1 cut(s) 57
BstV2I GAAGAC 1 cut(s) 164
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BtgI CCRYGG 1 cut(s) 336
BtsCI GGATG 1 cut(s) 277
CciI TCATGA 1 cut(s) 93
CviAII CATG 2 cut(s) 94, 337
DdeI CTNAG 2 cut(s) 295, 322
DpnI GATC 3 cut(s) 41, 60, 98
DpnII GATC 3 cut(s) 39, 58, 96
Eco130I CCWWGG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 336
EcoT22I ATGCAT 1 cut(s) 10
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 2 cut(s) 97, 340
FatI CATG 2 cut(s) 93, 336
FauNDI CATATG 1 cut(s) 181
FokI GGATG 1 cut(s) 284
Hin1II CATG 2 cut(s) 97, 340
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HpaI GTTAAC 1 cut(s) 114
Hpy166II GTNNAC 2 cut(s) 71, 114
Hpy188I TCNGA 2 cut(s) 63, 325
Hpy188III TCNNGA 2 cut(s) 77, 94
Hpy8I GTNNAC 2 cut(s) 71, 114
HpyCH4III ACNGT 2 cut(s) 55, 163
HpyCH4V TGCA 2 cut(s) 8, 199
HpyF3I CTNAG 2 cut(s) 295, 322
Hsp92II CATG 2 cut(s) 97, 340
KspAI GTTAAC 1 cut(s) 114
Kzo9I GATC 3 cut(s) 39, 58, 96
LpnPI CCDG 2 cut(s) 90, 339
LweI GCATC 1 cut(s) 112
MalI GATC 3 cut(s) 41, 60, 98
MboI GATC 3 cut(s) 39, 58, 96
MboII GAAGA 2 cut(s) 131, 169
MflI RGATCY 1 cut(s) 39
MluCI AATT 1 cut(s) 216
MnlI CCTC 4 cut(s) 23, 110, 262, 300
Mph1103I ATGCAT 1 cut(s) 10
MseI TTAA 3 cut(s) 113, 212, 282
Mva1269I GAATGC 1 cut(s) 10
NcoI CCATGG 1 cut(s) 336
NdeI CATATG 1 cut(s) 181
NdeII GATC 3 cut(s) 39, 58, 96
NlaIII CATG 2 cut(s) 97, 340
NlaIV GGNNCC 1 cut(s) 225
NsiI ATGCAT 1 cut(s) 10
PaeR7I CTCGAG 1 cut(s) 304
PagI TCATGA 1 cut(s) 93
PctI GAATGC 1 cut(s) 10
PsiI TTATAA 1 cut(s) 330
PspN4I GGNNCC 1 cut(s) 225
PspXI VCTCGAGB 1 cut(s) 304
PsuI RGATCY 1 cut(s) 39
SaqAI TTAA 3 cut(s) 113, 212, 282
Sau3AI GATC 3 cut(s) 39, 58, 96
SetI ASST 2 cut(s) 229, 296
SfaNI GCATC 1 cut(s) 112
Sfr274I CTCGAG 1 cut(s) 304
SlaI CTCGAG 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 304
SmoI CTYRAG 1 cut(s) 304
Sse9I AATT 1 cut(s) 216
SsiI CCGC 1 cut(s) 125
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 2 cut(s) 55, 163
TaqI TCGA 2 cut(s) 57, 305
TasI AATT 1 cut(s) 216
Tru1I TTAA 3 cut(s) 113, 212, 282
Tru9I TTAA 3 cut(s) 113, 212, 282
TspDTI ATGAA 2 cut(s) 17, 302
XhoI CTCGAG 1 cut(s) 304
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.