Rorug02G0485400

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000349
Physical Location & Seq
Forward (+)
61535751 .. 61536907
1157 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0485400.1

Sequence Viewer

Length: 207 bp
ATGCAGACATTAATTATGGGTAATCGAGATGAAATTGATGACTTCTCCAGCACAAGTGCTTATGTTCTTCTTTCAGTTCTCAAGCTTATTGACGAACATGATTTGTACGGGCAAGTTGCATGCCCCAAACACCACAAGCAGTCTGATGTTCCTGATATATATTGTCTTGCAGCAAAGACAAAGGTAGTTTATATGAGTGAAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

68

Amino Acids

7.73

Weight (kDa)

5.39

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 107
AluBI AGCT 1 cut(s) 85
AluI AGCT 1 cut(s) 85
ApeKI GCWGC 1 cut(s) 170
AseI ATTAAT 1 cut(s) 11
BbvI GCAGC 1 cut(s) 182
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BpmI CTGGAG 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 123
BstV1I GCAGC 1 cut(s) 182
Cac8I GCNNGC 1 cut(s) 121
Csp6I GTAC 1 cut(s) 106
CviAII CATG 2 cut(s) 98, 120
CviJI RGCY 1 cut(s) 85
CviKI_1 RGCY 1 cut(s) 85
CviQI GTAC 1 cut(s) 106
FaeI CATG 2 cut(s) 101, 123
FaiI YATR 8 cut(s) 17, 63, 99, 121, 158, 160, 192, 194
FatI CATG 2 cut(s) 97, 119
Fnu4HI GCNGC 1 cut(s) 171
Fsp4HI GCNGC 1 cut(s) 171
GluI GCNGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 31
Hin1II CATG 2 cut(s) 101, 123
HindIII AAGCTT 1 cut(s) 83
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 2 cut(s) 26, 152
HpyCH4V TGCA 3 cut(s) 4, 119, 170
Hsp92II CATG 2 cut(s) 101, 123
LpnPI CCDG 2 cut(s) 61, 165
Lsp1109I GCAGC 1 cut(s) 182
MboII GAAGA 1 cut(s) 59
MluCI AATT 2 cut(s) 12, 33
MseI TTAA 1 cut(s) 11
NlaIII CATG 2 cut(s) 101, 123
NspI RCATGY 1 cut(s) 123
PaeI GCATGC 1 cut(s) 123
PkrI GCNGC 1 cut(s) 172
PshBI ATTAAT 1 cut(s) 11
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 1 cut(s) 171
SetI ASST 2 cut(s) 87, 186
SmlI CTYRAG 1 cut(s) 80
SmoI CTYRAG 1 cut(s) 80
SphI GCATGC 1 cut(s) 123
Sse9I AATT 2 cut(s) 12, 33
TaqI TCGA 1 cut(s) 25
TasI AATT 2 cut(s) 12, 33
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseI GCWGC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 45
VspI ATTAAT 1 cut(s) 11
XceI RCATGY 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.