RLG00000028664

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000349
Physical Location & Seq
Reverse (-)
25777278 .. 25777773
496 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028664

Sequence Viewer

Length: 366 bp
ATGGCGATCCCTCTGGTCCCGTCTCCCCTTCCTCGACTTCTCCTACCACCTCTTCCCAGTCAACGATGCCGAACCCCTCCCCATCATGAGCCACGGCTTCGCCGAGTGCGTGAGCCTGATCTCGATTTCTTCATCGACAAAGAGTACCATCTCTGGAGCGAGGAAGATCGAGCCCCGTGTGACAAGTATGATTTCCCTTTCTCTGTGCTGAGAAACGGCTGTGTTGAGAGGCTCACTCGCGTCGATCTCGTGTTGCCGGCGAGCATGGCCACGGTGGGTGTGAGCTCGGTGAGGTCCATGTTTCTTGAGGATGTGGATTTGATGGACCAGATGTGGGAGCGTTTGATTTTGGGGCTACACCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

122

Amino Acids

14.09

Weight (kDa)

5.76

Isoelectric Point (pI)

59.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 240
AcoI YGGCCR 1 cut(s) 267
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 334
AluBI AGCT 1 cut(s) 285
AluI AGCT 1 cut(s) 285
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 1 cut(s) 27
AoxI GGCC 1 cut(s) 267
AspS9I GGNCC 3 cut(s) 16, 294, 325
AsuHPI GGTGA 1 cut(s) 301
AvaII GGWCC 3 cut(s) 16, 294, 325
BalI TGGCCA 1 cut(s) 269
BanII GRGCYC 2 cut(s) 175, 287
BauI CACGAG 1 cut(s) 248
Bbv12I GWGCWC 1 cut(s) 287
BccI CCATC 3 cut(s) 90, 156, 316
BceAI ACGGC 2 cut(s) 110, 232
BcoDI GTCTC 1 cut(s) 27
Bme18I GGWCC 3 cut(s) 16, 294, 325
BmgT120I GGNCC 3 cut(s) 16, 294, 325
BmiI GGNNCC 1 cut(s) 18
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 1 cut(s) 56
BmuI ACTGGG 1 cut(s) 51
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BpmI CTGGAG 1 cut(s) 175
BpuEI CTTGAG 1 cut(s) 326
BsaJI CCNNGG 2 cut(s) 92, 270
Bsc4I CCNNNNNNNGG 1 cut(s) 334
Bse118I RCCGGY 1 cut(s) 256
Bse1I ACTGG 1 cut(s) 57
BseDI CCNNGG 2 cut(s) 92, 270
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 334
BseMII CTCAG 1 cut(s) 200
BseNI ACTGG 1 cut(s) 57
Bsh1236I CGCG 1 cut(s) 240
BshFI GGCC 1 cut(s) 269
BsiHKAI GWGCWC 1 cut(s) 287
BsiSI CCGG 1 cut(s) 257
BslFI GGGAC 1 cut(s) 2
BslI CCNNNNNNNGG 1 cut(s) 334
BsmAI GTCTC 1 cut(s) 27
BsmBI CGTCTC 1 cut(s) 27
BsmFI GGGAC 1 cut(s) 2
BsnI GGCC 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 175, 287
Bsp143I GATC 4 cut(s) 6, 118, 166, 244
BspANI GGCC 1 cut(s) 269
BspCNI CTCAG 1 cut(s) 201
BspFNI CGCG 1 cut(s) 240
BspHI TCATGA 1 cut(s) 85
BspLI GGNNCC 1 cut(s) 18
BsrFI RCCGGY 1 cut(s) 256
BsrI ACTGG 1 cut(s) 57
BssAI RCCGGY 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 92, 270
BssMI GATC 4 cut(s) 6, 118, 166, 244
BssSI CACGAG 1 cut(s) 248
Bst2BI CACGAG 1 cut(s) 248
Bst4CI ACNGT 1 cut(s) 274
Bst6I CTCTTC 1 cut(s) 57
BstC8I GCNNGC 2 cut(s) 258, 262
BstDEI CTNAG 1 cut(s) 209
BstDSI CCRYGG 2 cut(s) 92, 270
BstF5I GGATG 1 cut(s) 316
BstFNI CGCG 1 cut(s) 240
BstKTI GATC 4 cut(s) 9, 121, 169, 247
BstMAI GTCTC 1 cut(s) 27
BstMBI GATC 4 cut(s) 6, 118, 166, 244
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstUI CGCG 1 cut(s) 240
BsuRI GGCC 1 cut(s) 269
BtgI CCRYGG 2 cut(s) 92, 270
BtsCI GGATG 1 cut(s) 316
Cac8I GCNNGC 2 cut(s) 258, 262
CciI TCATGA 1 cut(s) 85
Cfr10I RCCGGY 1 cut(s) 256
Cfr13I GGNCC 3 cut(s) 16, 294, 325
CseI GACGC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 145
CviAII CATG 3 cut(s) 86, 265, 298
CviJI RGCY 9 cut(s) 91, 97, 115, 173, 219, 232, 269, 285, 355
CviKI_1 RGCY 9 cut(s) 91, 97, 115, 173, 219, 232, 269, 285, 355
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 209
DpnI GATC 4 cut(s) 8, 120, 168, 246
DpnII GATC 4 cut(s) 6, 118, 166, 244
EaeI YGGCCR 1 cut(s) 267
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Ecl136II GAGCTC 1 cut(s) 285
Eco24I GRGCYC 2 cut(s) 175, 287
Eco47I GGWCC 3 cut(s) 16, 294, 325
Eco53kI GAGCTC 1 cut(s) 285
EcoICRI GAGCTC 1 cut(s) 285
EcoT38I GRGCYC 2 cut(s) 175, 287
Esp3I CGTCTC 1 cut(s) 27
FaeI CATG 3 cut(s) 89, 268, 301
FaiI YATR 5 cut(s) 87, 189, 266, 299, 364
FaqI GGGAC 1 cut(s) 2
FatI CATG 3 cut(s) 85, 264, 297
FokI GGATG 1 cut(s) 323
FriOI GRGCYC 2 cut(s) 175, 287
GsuI CTGGAG 1 cut(s) 175
HaeIII GGCC 1 cut(s) 269
HapII CCGG 1 cut(s) 257
HgaI GACGC 1 cut(s) 229
Hin1II CATG 3 cut(s) 89, 268, 301
HincII GTYRAC 1 cut(s) 62
HindII GTYRAC 1 cut(s) 62
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 1 cut(s) 62
Hpy188III TCNNGA 4 cut(s) 86, 122, 154, 305
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 245
HpyAV CCTTC 1 cut(s) 38
HpyCH4III ACNGT 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 209
Hsp92II CATG 3 cut(s) 89, 268, 301
KroI GCCGGC 1 cut(s) 256
KroNI GCCGGC 1 cut(s) 258
Kzo9I GATC 4 cut(s) 6, 118, 166, 244
LmnI GCTCC 2 cut(s) 156, 337
LpnPI CCDG 5 cut(s) 70, 129, 139, 270, 341
LweI GCATC 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 179
MalI GATC 4 cut(s) 8, 120, 168, 246
MboI GATC 4 cut(s) 6, 118, 166, 244
MboII GAAGA 3 cut(s) 44, 121, 176
MhlI GDGCHC 2 cut(s) 175, 287
MlsI TGGCCA 1 cut(s) 269
MluNI TGGCCA 1 cut(s) 269
MnlI CCTC 8 cut(s) 21, 42, 60, 87, 154, 222, 285, 301
Mox20I TGGCCA 1 cut(s) 269
MroNI GCCGGC 1 cut(s) 256
MscI TGGCCA 1 cut(s) 269
Msp20I TGGCCA 1 cut(s) 269
MspI CCGG 1 cut(s) 257
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 1 cut(s) 266
NaeI GCCGGC 1 cut(s) 258
NdeII GATC 4 cut(s) 6, 118, 166, 244
NgoMIV GCCGGC 1 cut(s) 256
NlaIII CATG 3 cut(s) 89, 268, 301
NlaIV GGNNCC 1 cut(s) 18
NmeAIII GCCGAG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 179
PagI TCATGA 1 cut(s) 85
PcsI WCGNNNNNNNCGW 2 cut(s) 100, 106
PdiI GCCGGC 1 cut(s) 258
Psp124BI GAGCTC 1 cut(s) 287
PspN4I GGNNCC 1 cut(s) 18
PspPI GGNCC 3 cut(s) 16, 294, 325
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SacI GAGCTC 1 cut(s) 287
Sau3AI GATC 4 cut(s) 6, 118, 166, 244
Sau96I GGNCC 3 cut(s) 16, 294, 325
SduI GDGCHC 2 cut(s) 175, 287
SetI ASST 3 cut(s) 52, 287, 296
SfaNI GCATC 1 cut(s) 56
SinI GGWCC 3 cut(s) 16, 294, 325
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
SstI GAGCTC 1 cut(s) 287
TaaI ACNGT 1 cut(s) 274
TaqI TCGA 5 cut(s) 34, 123, 135, 169, 243
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspDTI ATGAA 1 cut(s) 121
VpaK11BI GGWCC 3 cut(s) 16, 294, 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.