Prupe.3G224200_v2.0.a1

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000349
Physical Location & Seq
Forward (+)
22376654 .. 22377813
1160 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G224200.1

Sequence Viewer

Length: 441 bp
ATGCTCCACAATCTCAACCTCTTAGAGCTGCAAACAGGATTTACCCAATATGATCTGGTTGGCATGGCTGCACTGCTTAAACTTTGTCCCAATCTCGAGACAATGATTCTGGAATACCTTTTCAAGAAAAGGGCAGATGAGAGTTTATCAGAAGAGTTGCTAAATAAGCCAGTTGAATTGAGCATGCCAAGTCTTAAGCAAGTTACAATGAACGTGTATACCGGAACAGAAGATGAATTCAATTTTATGAAAATGTTGATTGGGCAAGGAGTTGTCCTAGAAAAGATTGTGTTTGTTCCCGTCCAAGTTGAGAACGGAAAAGTTGTTGAGAGGTCGCTTCCTCCAGTGGTTCTATGTAGAAACGGTTCACAAGGTTGGAAGTGCTCACCGGACCTCTCCTCAGTACGGAATATTATAGAGTCTGAGCTAAATGTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box FBD

Protein Analysis

147

Amino Acids

16.45

Weight (kDa)

4.84

Isoelectric Point (pI)

49.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 218
AcsI RAATTY 1 cut(s) 236
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 1 cut(s) 405
AflII CTTAAG 1 cut(s) 194
AflIII ACRYGT 1 cut(s) 213
AgsI TTSAA 3 cut(s) 124, 176, 241
AluBI AGCT 2 cut(s) 28, 427
AluI AGCT 2 cut(s) 28, 427
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 95
ApeKI GCWGC 2 cut(s) 28, 68
ApoI RAATTY 1 cut(s) 236
Asp700I GAANNNNTTC 1 cut(s) 364
AspS9I GGNCC 1 cut(s) 391
AsuHPI GGTGA 1 cut(s) 378
AvaI CYCGRG 1 cut(s) 95
AvaII GGWCC 1 cut(s) 391
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 2 cut(s) 15, 55
BcoDI GTCTC 1 cut(s) 92
BfaI CTAG 1 cut(s) 278
BfrI CTTAAG 1 cut(s) 194
BisI GCNGC 2 cut(s) 29, 69
BlsI GCNGC 2 cut(s) 30, 70
Bme18I GGWCC 1 cut(s) 391
BmeT110I CYCGRG 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 391
BpmI CTGGAG 1 cut(s) 327
BsaWI WCCGGW 2 cut(s) 221, 388
Bsc4I CCNNNNNNNGG 1 cut(s) 405
Bse1I ACTGG 2 cut(s) 170, 344
BseLI CCNNNNNNNGG 1 cut(s) 405
BseMII CTCAG 2 cut(s) 414, 414
BseNI ACTGG 2 cut(s) 170, 344
BseRI GAGGAG 1 cut(s) 388
BseXI GCAGC 2 cut(s) 15, 55
BsgI GTGCAG 1 cut(s) 54
BsiHKAI GWGCWC 1 cut(s) 386
BsiHKCI CYCGRG 1 cut(s) 95
BsiSI CCGG 2 cut(s) 222, 389
BslFI GGGAC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 405
BsmAI GTCTC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 72
BsoBI CYCGRG 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 386
Bsp143I GATC 1 cut(s) 52
BspCNI CTCAG 2 cut(s) 413, 415
BspTI CTTAAG 1 cut(s) 194
BsrI ACTGG 2 cut(s) 170, 344
BssMI GATC 1 cut(s) 52
BssNAI GTATAC 1 cut(s) 219
Bst1107I GTATAC 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 365
Bst6I CTCTTC 1 cut(s) 147
BstAFI CTTAAG 1 cut(s) 194
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 3 cut(s) 22, 400, 423
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 92
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 1 cut(s) 166
BstNSI RCATGY 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 15, 55
BstZ17I GTATAC 1 cut(s) 219
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 2 cut(s) 71, 351
Cac8I GCNNGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 391
Csp6I GTAC 1 cut(s) 404
CviAII CATG 2 cut(s) 64, 184
CviJI RGCY 4 cut(s) 28, 68, 169, 427
CviKI_1 RGCY 4 cut(s) 28, 68, 169, 427
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 3 cut(s) 22, 400, 423
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 147
EarI CTCTTC 1 cut(s) 147
Eco47I GGWCC 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 236
FaeI CATG 2 cut(s) 67, 187
FaiI YATR 7 cut(s) 51, 65, 185, 219, 248, 355, 416
FaqI GGGAC 1 cut(s) 72
FatI CATG 2 cut(s) 63, 183
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 2 cut(s) 29, 69
Fsp4HI GCNGC 2 cut(s) 29, 69
FspBI CTAG 1 cut(s) 278
GluI GCNGC 2 cut(s) 29, 69
GsuI CTGGAG 1 cut(s) 327
HapII CCGG 2 cut(s) 222, 389
Hin1II CATG 2 cut(s) 67, 187
HinfI GANTC 2 cut(s) 106, 419
HpaII CCGG 2 cut(s) 222, 389
HphI GGTGA 1 cut(s) 378
Hpy166II GTNNAC 2 cut(s) 219, 368
Hpy188I TCNGA 2 cut(s) 151, 424
Hpy188III TCNNGA 4 cut(s) 95, 97, 110, 124
Hpy8I GTNNAC 2 cut(s) 219, 368
HpyCH4III ACNGT 1 cut(s) 365
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 2 cut(s) 31, 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 166
HpyF3I CTNAG 3 cut(s) 22, 400, 423
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 2 cut(s) 67, 187
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 7 cut(s) 21, 41, 95, 183, 235, 357, 402
Lsp1109I GCAGC 2 cut(s) 15, 55
MaeI CTAG 1 cut(s) 278
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 202
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 2 cut(s) 164, 242
MhlI GDGCHC 1 cut(s) 386
MluCI AATT 3 cut(s) 176, 236, 241
MlyI GAGTC 1 cut(s) 428
MmeI TCCRAC 1 cut(s) 356
MnlI CCTC 5 cut(s) 29, 324, 351, 404, 409
MroXI GAANNNNTTC 1 cut(s) 364
MseI TTAA 2 cut(s) 78, 195
MspCI CTTAAG 1 cut(s) 194
MspI CCGG 2 cut(s) 222, 389
MwoI GCNNNNNNNGC 1 cut(s) 166
NdeII GATC 1 cut(s) 52
NlaIII CATG 2 cut(s) 67, 187
NspI RCATGY 1 cut(s) 187
PaeI GCATGC 1 cut(s) 187
PaeR7I CTCGAG 1 cut(s) 95
PdmI GAANNNNTTC 1 cut(s) 364
PfeI GAWTC 1 cut(s) 106
PkrI GCNGC 2 cut(s) 30, 70
PleI GAGTC 1 cut(s) 427
PpsI GAGTC 1 cut(s) 427
PspPI GGNCC 1 cut(s) 391
PsrI GAACNNNNNNTAC 2 cut(s) 349, 381
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
SaqAI TTAA 2 cut(s) 78, 195
SatI GCNGC 2 cut(s) 29, 69
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 1 cut(s) 391
SchI GAGTC 1 cut(s) 428
SduI GDGCHC 1 cut(s) 386
SetI ASST 8 cut(s) 21, 30, 120, 216, 335, 376, 396, 429
Sfr274I CTCGAG 1 cut(s) 95
SinI GGWCC 1 cut(s) 391
SlaI CTCGAG 1 cut(s) 95
SmlI CTYRAG 2 cut(s) 95, 194
SmoI CTYRAG 2 cut(s) 95, 194
SphI GCATGC 1 cut(s) 187
Sse9I AATT 3 cut(s) 176, 236, 241
SspI AATATT 1 cut(s) 412
SspMI CTAG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 365
TaiI ACGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 96
TasI AATT 3 cut(s) 176, 236, 241
TfiI GAWTC 1 cut(s) 106
Tru1I TTAA 2 cut(s) 78, 195
Tru9I TTAA 2 cut(s) 78, 195
TscAI CASTG 2 cut(s) 78, 351
TseI GCWGC 2 cut(s) 28, 68
TspDTI ATGAA 3 cut(s) 224, 249, 263
TspGWI ACGGA 2 cut(s) 330, 421
TspRI CASTG 2 cut(s) 78, 351
Vha464I CTTAAG 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 391
XapI RAATTY 1 cut(s) 236
XceI RCATGY 1 cut(s) 187
XhoI CTCGAG 1 cut(s) 95
XmiI GTMKAC 1 cut(s) 218
XmnI GAANNNNTTC 1 cut(s) 364
XspI CTAG 1 cut(s) 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.