RLG00000002340

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000349
Physical Location & Seq
Reverse (-)
32499934 .. 32501219
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002340

Sequence Viewer

Length: 573 bp
ATGAACAGAACCAGTGATCGGAGGTTTTCTAAGGGTCAAGAGTTCCAGGCCATCCACAACTCCCTCGTCTCCCGCCAATGGCGATCCCTCTGGTCCCGTCTCCCCTTCCTCGACTTCTCCTACCACCTCTTCCCTGTCAACGACGCCGAACCCCTCCCCATCACGAGCCACGGCTTTGCCGAGTTCATCAACGGCGCTCTCATTCTCCGCCCCAATTCTCCAATCAAAACCTTCCGCCTCTCTTTCATCTTTTACCAGTACTACACCTCCCACGTCGACTCTTGGGTGCGCTCTGCCGTCACGCGCTTCCAGGTGCGTGAGCCTGACCTCGATTTCTTCATCGACAAAGAGTACCATCTCTGGAGCAAGGAAGATCGAGCCCCGCGTGACAAGTATGATTTCCCTTTCTCTGTGCTGAGAAACGGCTGTGTTGAGAGGCTCAAGCGCGTCGATCTCGCGTTGTCGGCGAGCATGGCCACGGTGGGTGTGAGCTCGGTGAGGTCCATGTTTCTTGAGGATGTGGATTTGATGGACCAGATGTGGGAGCGTTTGATTTTGGGGCTACACCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

191

Amino Acids

22.43

Weight (kDa)

7.92

Isoelectric Point (pI)

45.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 276
AccII CGCG 4 cut(s) 304, 385, 447, 458
AciI CCGC 4 cut(s) 73, 208, 235, 383
AclWI GGATC 1 cut(s) 78
AcoI YGGCCR 1 cut(s) 474
AcyI GRCGYC 1 cut(s) 144
AfaI GTAC 2 cut(s) 260, 353
AfiI CCNNNNNNNGG 3 cut(s) 18, 78, 541
AjiI CACGTC 1 cut(s) 274
AjnI CCWGG 2 cut(s) 45, 309
AluBI AGCT 1 cut(s) 492
AluI AGCT 1 cut(s) 492
Alw21I GWGCWC 1 cut(s) 494
Alw26I GTCTC 2 cut(s) 73, 104
AlwI GGATC 1 cut(s) 78
AoxI GGCC 2 cut(s) 48, 474
AspLEI GCGC 4 cut(s) 197, 291, 306, 447
AspS9I GGNCC 3 cut(s) 93, 501, 532
AsuHPI GGTGA 1 cut(s) 508
AvaII GGWCC 3 cut(s) 93, 501, 532
BalI TGGCCA 1 cut(s) 476
BanII GRGCYC 2 cut(s) 382, 494
BauI CACGAG 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 494
BccI CCATC 4 cut(s) 59, 167, 363, 523
BceAI ACGGC 4 cut(s) 187, 208, 281, 439
BciT130I CCWGG 2 cut(s) 47, 311
BcoDI GTCTC 2 cut(s) 73, 104
BfoI RGCGCY 1 cut(s) 198
BmcAI AGTACT 1 cut(s) 260
Bme1390I CCNGG 2 cut(s) 47, 311
Bme18I GGWCC 3 cut(s) 93, 501, 532
BmgBI CACGTC 1 cut(s) 274
BmgT120I GGNCC 3 cut(s) 93, 501, 532
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 2 cut(s) 47, 311
BpmI CTGGAG 1 cut(s) 382
BpuEI CTTGAG 2 cut(s) 425, 533
BsaHI GRCGYC 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 169, 477
BsaXI ACNNNNNCTCC 2 cut(s) 251, 281
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 78, 541
Bse1I ACTGG 2 cut(s) 12, 256
BseBI CCWGG 2 cut(s) 47, 311
BseDI CCNNGG 2 cut(s) 169, 477
BseGI GGATG 2 cut(s) 51, 523
BseLI CCNNNNNNNGG 3 cut(s) 18, 78, 541
BseMII CTCAG 1 cut(s) 407
BseNI ACTGG 2 cut(s) 12, 256
Bsh1236I CGCG 4 cut(s) 304, 385, 447, 458
BshFI GGCC 2 cut(s) 50, 476
BsiHKAI GWGCWC 1 cut(s) 494
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 3 cut(s) 18, 78, 541
BsmAI GTCTC 2 cut(s) 73, 104
BsmBI CGTCTC 2 cut(s) 73, 104
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 2 cut(s) 50, 476
Bsp1286I GDGCHC 2 cut(s) 382, 494
Bsp143I GATC 4 cut(s) 16, 83, 373, 451
BspACI CCGC 4 cut(s) 73, 208, 235, 383
BspANI GGCC 2 cut(s) 50, 476
BspCNI CTCAG 1 cut(s) 408
BspFNI CGCG 4 cut(s) 304, 385, 447, 458
BspLI GGNNCC 1 cut(s) 95
BspPI GGATC 1 cut(s) 78
BsrI ACTGG 2 cut(s) 12, 256
BssECI CCNNGG 2 cut(s) 169, 477
BssMI GATC 4 cut(s) 16, 83, 373, 451
BssNI GRCGYC 1 cut(s) 144
BssSI CACGAG 1 cut(s) 163
Bst2BI CACGAG 1 cut(s) 163
Bst2UI CCWGG 2 cut(s) 47, 311
Bst4CI ACNGT 1 cut(s) 481
Bst6I CTCTTC 1 cut(s) 134
BstACI GRCGYC 1 cut(s) 144
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 2 cut(s) 30, 416
BstDSI CCRYGG 2 cut(s) 169, 477
BstF5I GGATG 2 cut(s) 51, 523
BstFNI CGCG 4 cut(s) 304, 385, 447, 458
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 4 cut(s) 197, 291, 306, 447
BstKTI GATC 4 cut(s) 19, 86, 376, 454
BstMAI GTCTC 2 cut(s) 73, 104
BstMBI GATC 4 cut(s) 16, 83, 373, 451
BstMWI GCNNNNNNNGC 2 cut(s) 464, 473
BstNI CCWGG 2 cut(s) 47, 311
BstSCI CCNGG 2 cut(s) 45, 309
BstUI CGCG 4 cut(s) 304, 385, 447, 458
BsuRI GGCC 2 cut(s) 50, 476
BtgI CCRYGG 2 cut(s) 169, 477
BtrI CACGTC 1 cut(s) 274
BtsCI GGATG 2 cut(s) 51, 523
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 469
CfoI GCGC 4 cut(s) 197, 291, 306, 447
Cfr13I GGNCC 3 cut(s) 93, 501, 532
CseI GACGC 2 cut(s) 152, 436
Csp6I GTAC 2 cut(s) 259, 352
CviAII CATG 2 cut(s) 472, 505
CviQI GTAC 2 cut(s) 259, 352
DdeI CTNAG 2 cut(s) 30, 416
DpnI GATC 4 cut(s) 18, 85, 375, 453
DpnII GATC 4 cut(s) 16, 83, 373, 451
EaeI YGGCCR 1 cut(s) 474
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
EciI GGCGGA 2 cut(s) 197, 224
Ecl136II GAGCTC 1 cut(s) 492
Eco24I GRGCYC 2 cut(s) 382, 494
Eco47I GGWCC 3 cut(s) 93, 501, 532
Eco53kI GAGCTC 1 cut(s) 492
EcoICRI GAGCTC 1 cut(s) 492
EcoRII CCWGG 2 cut(s) 45, 309
EcoT38I GRGCYC 2 cut(s) 382, 494
Esp3I CGTCTC 2 cut(s) 73, 104
FaeI CATG 2 cut(s) 475, 508
FaiI YATR 4 cut(s) 396, 473, 506, 571
FaqI GGGAC 1 cut(s) 79
FatI CATG 2 cut(s) 471, 504
FauI CCCGC 2 cut(s) 80, 390
FblI GTMKAC 1 cut(s) 276
FokI GGATG 2 cut(s) 38, 530
FriOI GRGCYC 2 cut(s) 382, 494
GlaI GCGC 4 cut(s) 196, 290, 305, 446
GsuI CTGGAG 1 cut(s) 382
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 2 cut(s) 50, 476
HgaI GACGC 2 cut(s) 152, 436
HhaI GCGC 4 cut(s) 197, 291, 306, 447
Hin1I GRCGYC 1 cut(s) 144
Hin1II CATG 2 cut(s) 475, 508
Hin6I GCGC 4 cut(s) 195, 289, 304, 445
HinP1I GCGC 4 cut(s) 195, 289, 304, 445
HincII GTYRAC 2 cut(s) 139, 277
HindII GTYRAC 2 cut(s) 139, 277
HinfI GANTC 1 cut(s) 278
HphI GGTGA 1 cut(s) 508
Hpy166II GTNNAC 2 cut(s) 139, 277
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 4 cut(s) 38, 163, 361, 512
Hpy8I GTNNAC 2 cut(s) 139, 277
Hpy99I CGWCG 3 cut(s) 146, 278, 452
HpyAV CCTTC 2 cut(s) 115, 241
HpyCH4III ACNGT 1 cut(s) 481
HpyCH4IV ACGT 1 cut(s) 273
HpyF10VI GCNNNNNNNGC 2 cut(s) 464, 473
HpyF3I CTNAG 2 cut(s) 30, 416
HpySE526I ACGT 1 cut(s) 273
Hsp92I GRCGYC 1 cut(s) 144
Hsp92II CATG 2 cut(s) 475, 508
HspAI GCGC 4 cut(s) 195, 289, 304, 445
Kzo9I GATC 4 cut(s) 16, 83, 373, 451
LmnI GCTCC 2 cut(s) 363, 544
MaeII ACGT 1 cut(s) 273
MaeIII GTNAC 2 cut(s) 298, 386
MalI GATC 4 cut(s) 18, 85, 375, 453
MboI GATC 4 cut(s) 16, 83, 373, 451
MboII GAAGA 3 cut(s) 121, 328, 383
MhlI GDGCHC 2 cut(s) 382, 494
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 1 cut(s) 214
MluNI TGGCCA 1 cut(s) 476
MlyI GAGTC 1 cut(s) 272
Mox20I TGGCCA 1 cut(s) 476
MscI TGGCCA 1 cut(s) 476
Msp20I TGGCCA 1 cut(s) 476
MspR9I CCNGG 2 cut(s) 47, 311
MvaI CCWGG 2 cut(s) 47, 311
MvnI CGCG 4 cut(s) 304, 385, 447, 458
MwoI GCNNNNNNNGC 2 cut(s) 464, 473
NdeII GATC 4 cut(s) 16, 83, 373, 451
NlaIII CATG 2 cut(s) 475, 508
NlaIV GGNNCC 1 cut(s) 95
NmeAIII GCCGAG 1 cut(s) 205
NmuCI GTSAC 2 cut(s) 298, 386
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 382
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
Psp124BI GAGCTC 1 cut(s) 494
Psp6I CCWGG 2 cut(s) 45, 309
PspGI CCWGG 2 cut(s) 45, 309
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 3 cut(s) 93, 501, 532
RsaI GTAC 2 cut(s) 260, 353
RsaNI GTAC 2 cut(s) 259, 352
SacI GAGCTC 1 cut(s) 494
SalI GTCGAC 1 cut(s) 275
Sau3AI GATC 4 cut(s) 16, 83, 373, 451
Sau96I GGNCC 3 cut(s) 93, 501, 532
ScaI AGTACT 1 cut(s) 260
SchI GAGTC 1 cut(s) 272
ScrFI CCNGG 2 cut(s) 47, 311
SduI GDGCHC 2 cut(s) 382, 494
SetI ASST 9 cut(s) 26, 129, 233, 269, 276, 315, 330, 494, 503
SinI GGWCC 3 cut(s) 93, 501, 532
SmlI CTYRAG 2 cut(s) 440, 512
SmoI CTYRAG 2 cut(s) 440, 512
Sse9I AATT 1 cut(s) 214
SsiI CCGC 4 cut(s) 73, 208, 235, 383
SstI GAGCTC 1 cut(s) 494
StyD4I CCNGG 2 cut(s) 45, 309
TaaI ACNGT 1 cut(s) 481
TaiI ACGT 1 cut(s) 276
TaqI TCGA 6 cut(s) 111, 276, 330, 342, 376, 450
TasI AATT 1 cut(s) 214
TatI WGTACW 1 cut(s) 258
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 2 cut(s) 298, 386
Tsp45I GTSAC 2 cut(s) 298, 386
TspDTI ATGAA 4 cut(s) 17, 175, 235, 328
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 3 cut(s) 93, 501, 532
XmiI GTMKAC 1 cut(s) 276
ZrmI AGTACT 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.