Rroxscaffold_2G00089460

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000349
Physical Location & Seq
Reverse (-)
11450257 .. 11457743
7487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00089460.1

Sequence Viewer

Length: 222 bp
ATGGTGCACCTGGATAAATACTATGATTGGTGGAGTAAGGCTGTGAAGTTGCTTGGATCAGCGCCGAATGTGAAGTGTGCTAATGTGCAAAATTGGTGGTTCAAGCTGCTGACATCAAAGGATTCTTTCCCAAAAACTTTTACGCTCCACAACCTCAGCCTCTTAGAGCTACGGATGGGGTATACTCAATATGAGGTTTGTGGATCAACCATGGAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

73

Amino Acids

8.59

Weight (kDa)

8.98

Isoelectric Point (pI)

17.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 182
AclWI GGATC 2 cut(s) 64, 211
AgsI TTSAA 1 cut(s) 103
AjnI CCWGG 1 cut(s) 9
AluBI AGCT 2 cut(s) 106, 169
AluI AGCT 2 cut(s) 106, 169
Alw21I GWGCWC 1 cut(s) 9
Alw44I GTGCAC 1 cut(s) 5
AlwI GGATC 2 cut(s) 64, 211
ApaLI GTGCAC 1 cut(s) 5
ApeKI GCWGC 1 cut(s) 106
AspLEI GCGC 1 cut(s) 64
BaeGI GKGCMC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 9
BbvCI CCTCAGC 1 cut(s) 155
BbvI GCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 169
BciT130I CCWGG 1 cut(s) 11
BfoI RGCGCY 1 cut(s) 65
BisI GCNGC 1 cut(s) 107
BlsI GCNGC 1 cut(s) 108
Bme1390I CCNGG 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 11
Bpu10I CCTNAGC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 210
BseBI CCWGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 1 cut(s) 180
BseMII CTCAG 1 cut(s) 169
BseSI GKGCMC 1 cut(s) 9
BseXI GCAGC 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 2 cut(s) 56, 203
Bsp19I CCATGG 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 168
BspPI GGATC 2 cut(s) 64, 211
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 2 cut(s) 56, 203
BssNAI GTATAC 1 cut(s) 183
BssT1I CCWWGG 1 cut(s) 210
Bst1107I GTATAC 1 cut(s) 183
Bst2UI CCWGG 1 cut(s) 11
BstDEI CTNAG 2 cut(s) 155, 163
BstDSI CCRYGG 1 cut(s) 210
BstF5I GGATG 1 cut(s) 180
BstH2I RGCGCY 1 cut(s) 65
BstHHI GCGC 1 cut(s) 64
BstKTI GATC 2 cut(s) 59, 206
BstMBI GATC 2 cut(s) 56, 203
BstNI CCWGG 1 cut(s) 11
BstSCI CCNGG 1 cut(s) 9
BstSLI GKGCMC 1 cut(s) 9
BstV1I GCAGC 1 cut(s) 93
BstZ17I GTATAC 1 cut(s) 183
BtgI CCRYGG 1 cut(s) 210
BtsCI GGATG 1 cut(s) 180
CfoI GCGC 1 cut(s) 64
CspCI CAANNNNNGTGG 2 cut(s) 77, 112
CviAII CATG 1 cut(s) 211
CviJI RGCY 4 cut(s) 41, 106, 159, 169
CviKI_1 RGCY 4 cut(s) 41, 106, 159, 169
DdeI CTNAG 2 cut(s) 155, 163
DpnI GATC 2 cut(s) 58, 205
DpnII GATC 2 cut(s) 56, 203
Eco130I CCWWGG 1 cut(s) 210
EcoRII CCWGG 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 210
ErhI CCWWGG 1 cut(s) 210
FaeI CATG 1 cut(s) 214
FaiI YATR 4 cut(s) 24, 183, 192, 212
FatI CATG 1 cut(s) 210
FblI GTMKAC 1 cut(s) 182
Fnu4HI GCNGC 1 cut(s) 107
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 1 cut(s) 107
GlaI GCGC 1 cut(s) 63
GluI GCNGC 1 cut(s) 107
HaeII RGCGCY 1 cut(s) 65
HhaI GCGC 1 cut(s) 64
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 62
HinP1I GCGC 1 cut(s) 62
HinfI GANTC 1 cut(s) 122
Hpy166II GTNNAC 2 cut(s) 7, 183
Hpy8I GTNNAC 2 cut(s) 7, 183
HpyCH4V TGCA 2 cut(s) 7, 88
HpyF3I CTNAG 2 cut(s) 155, 163
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 56, 203
LmnI GCTCC 1 cut(s) 150
LpnPI CCDG 1 cut(s) 23
Lsp1109I GCAGC 1 cut(s) 93
MalI GATC 2 cut(s) 58, 205
MboI GATC 2 cut(s) 56, 203
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 1 cut(s) 91
MnlI CCTC 3 cut(s) 164, 170, 187
MspR9I CCNGG 1 cut(s) 11
MvaI CCWGG 1 cut(s) 11
NcoI CCATGG 1 cut(s) 210
NdeII GATC 2 cut(s) 56, 203
NlaIII CATG 1 cut(s) 214
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 9
PspGI CCWGG 1 cut(s) 9
SatI GCNGC 1 cut(s) 107
Sau3AI GATC 2 cut(s) 56, 203
ScrFI CCNGG 1 cut(s) 11
SduI GDGCHC 1 cut(s) 9
SetI ASST 5 cut(s) 12, 108, 156, 171, 198
SgeI CNNG 4 cut(s) 22, 23, 65, 115
Sse9I AATT 1 cut(s) 91
StyD4I CCNGG 1 cut(s) 9
StyI CCWWGG 1 cut(s) 210
TasI AATT 1 cut(s) 91
TfiI GAWTC 1 cut(s) 122
TseI GCWGC 1 cut(s) 106
TspGWI ACGGA 1 cut(s) 187
VneI GTGCAC 1 cut(s) 5
XmiI GTMKAC 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.