Rmu_sc0006325.1_g000010

LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006325.1
OG0000349
Physical Location & Seq
Forward (+)
27710 .. 28844
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006325.1_g000010.1.cds

Sequence Viewer

Length: 714 bp
ctgatccaaatcctctccttgattccgaccttagaggccatccacaactccctcgtctccagccaatggcgatccctctggtcccgtctccccttcctcgacttctcctaccacctcttcccggtcaatgacgccgaacccctccccatcacgagccacggcttcgccgagttcgtcaaccgcgctctcattctccgccccaattctccaatcaaaaccttccacctctctttcatcttctaccagtactacacctcccacgtcgagtcttgggtgtgctctgccgccacacgcttccaggtgcctgagcctgacctcgatttcttcatcgacaaagagtaccatctctggagcgaggaagatcgagccccgcgtgacaagtatgatttccctttctctgtgctgagaaacggctatgtaattttggaactcacagctccggcgacctattccggtgaaacgagcccagatcagttcgcctccttgctccggtcgtctcttgcggcgattctcctttgcggcggcgctgcaaggcggcagcacaggttgaggaaatcggacccgaccggaaaacgtagttccggcgacgtcaaggcttcaggcttccatctttggcttcgtggcagtcgtctgagtcgatctatggtgtttgtttcgatcgatttacttggaaatcggttcaactcagttgggattactattcccggtttgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBD KIX_2

Protein Analysis

237

Amino Acids

26.92

Weight (kDa)

8.59

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000349)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G43415
fragaria_vesca FvH4_1g28610 FvH4_6g43940 FvH4_6g43940 FvH4_6g43940 FvH4_6g43950 FvH4_6g43960 FvH4_6g43970 FvH4_6g43990 FvH4_6g44000 FvH4_7g14510
malus_domestica MD09G1101800.v1.1 MD17G1089200.v1.1 MD17G1089300.v1.1 MD17G1089400.v1.1 MD17G1089500.v1.1 MD17G1089600.v1.1
prunus_persica Prupe.3G223900_v2.0.a1 Prupe.3G223900_v2.0.a1 Prupe.3G224000_v2.0.a1 Prupe.3G224100_v2.0.a1 Prupe.3G224200_v2.0.a1
pyrus_communis pycom09g02550 pycom17g02610 pycom17g08610 pycom17g08620 pycom17g08630 pycom17g08640 pycom17g08670
rosa_chinensis RchiOBHm_Chr2g0160711 RchiOBHm_Chr2g0160721 RchiOBHm_Chr2g0160731 RchiOBHm_Chr2g0160741 RchiOBHm_Chr4g0433831 RchiOBHm_Chr7g0197991
rosa_laevigata RLG00000001614 RLG00000002340 RLG00000003895 RLG00000005223 RLG00000021235 RLG00000021236 RLG00000021237 RLG00000021238 RLG00000028664 RLG00000029542 RLG00000029654 RLG00000035034
rosa_multiflora Rmu_co8177938.1_g000001 Rmu_co8474907.1_g000002 Rmu_sc0000064.1_g000011 Rmu_sc0000221.1_g000038 Rmu_sc0002773.1_g000001 Rmu_sc0002773.1_g000004 Rmu_sc0002773.1_g000006 Rmu_sc0002773.1_g000008 Rmu_sc0003465.1_g000005 Rmu_sc0006325.1_g000010 Rmu_sc0024525.1_g000002 Rmu_sc0030848.1_g000001 Rmu_sc0030848.1_g000002 Rmu_sc0030848.1_g000004
rosa_roxburghii Rroxscaffold_2G00089410 Rroxscaffold_2G00089420 Rroxscaffold_2G00089430 Rroxscaffold_2G00089450 Rroxscaffold_2G00089460 Rroxscaffold_3G00258030 Rroxscaffold_5G00351500
rosa_rugosa Rorug02G0485200 Rorug02G0485400 Rorug02G0485500 Rorug02G0485600 Rorug06G0149200
rosa_samantha Rh1AG011000 Rh2AG501800 Rh2AG550200 Rh2AG550300 Rh2AG550400 Rh2AG550500 Rh2BG217000 Rh2BG564800 Rh2BG564900 Rh2BG565000 Rh2BG565100 Rh2BG607100 Rh2CG487700 Rh2CG534600 Rh2CG534700 Rh2CG534800 Rh2CG534900 Rh2DG573500 Rh2DG573600 Rh2DG574000 Rh2DG574100 Rh3CG290600 Rh7AG168600 Rh7BG171600 Rh7BG171700 Rh7CG178100 Rh7DG170700 Rh7DG170900
rosa_wichuraiana Rw2G022070 Rw2G045590 Rw2G045600 Rw2G045610 Rw2G045620 Rw3G021600 Rw7G014730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 591
AccB1I GGYRCC 1 cut(s) 301
AccB7I CCANNNNNTGG 1 cut(s) 66
AccII CGCG 2 cut(s) 183, 373
AciI CCGC 8 cut(s) 181, 196, 285, 371, 503, 519, 522, 535
AclWI GGATC 1 cut(s) 66
AcuI CTGAAG 1 cut(s) 582
AcyI GRCGYC 2 cut(s) 132, 588
AfaI GTAC 2 cut(s) 248, 341
AfiI CCNNNNNNNGG 3 cut(s) 66, 121, 489
AgsI TTSAA 1 cut(s) 682
AjiI CACGTC 1 cut(s) 262
AjnI CCWGG 1 cut(s) 297
AluBI AGCT 1 cut(s) 437
AluI AGCT 1 cut(s) 437
Alw21I GWGCWC 1 cut(s) 281
Alw26I GTCTC 3 cut(s) 61, 92, 501
AlwI GGATC 1 cut(s) 66
AoxI GGCC 1 cut(s) 36
ApeKI GCWGC 2 cut(s) 527, 538
AspLEI GCGC 2 cut(s) 185, 527
AspS9I GGNCC 2 cut(s) 81, 559
AsuC2I CCSGG 2 cut(s) 122, 705
AsuHPI GGTGA 1 cut(s) 467
AvaII GGWCC 2 cut(s) 81, 559
BanI GGYRCC 1 cut(s) 301
BanII GRGCYC 2 cut(s) 370, 467
BauI CACGAG 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 2 cut(s) 514, 550
BccI CCATC 4 cut(s) 47, 155, 351, 615
BceAI ACGGC 2 cut(s) 175, 427
BciT130I CCWGG 1 cut(s) 299
BcnI CCSGG 2 cut(s) 122, 705
BcoDI GTCTC 3 cut(s) 61, 92, 501
BfoI RGCGCY 1 cut(s) 528
BisI GCNGC 7 cut(s) 285, 504, 520, 523, 528, 536, 539
BlsI GCNGC 7 cut(s) 286, 505, 521, 524, 529, 537, 540
BmcAI AGTACT 1 cut(s) 248
Bme1390I CCNGG 3 cut(s) 122, 299, 705
Bme18I GGWCC 2 cut(s) 81, 559
BmgBI CACGTC 1 cut(s) 262
BmgT120I GGNCC 2 cut(s) 81, 559
BmiI GGNNCC 3 cut(s) 83, 303, 561
BmrFI CCNGG 3 cut(s) 122, 299, 705
BpmI CTGGAG 2 cut(s) 43, 370
Bpu10I CCTNAGC 1 cut(s) 306
BpuMI CCSGG 2 cut(s) 122, 705
Bsa29I ATCGAT 1 cut(s) 660
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 2 cut(s) 132, 588
BsaJI CCNNGG 1 cut(s) 157
BsaWI WCCGGW 3 cut(s) 452, 489, 566
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 3 cut(s) 66, 121, 489
Bse1I ACTGG 1 cut(s) 244
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 299
BseCI ATCGAT 1 cut(s) 660
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 39
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 66, 121, 489
BseMII CTCAG 4 cut(s) 297, 395, 623, 699
BseNI ACTGG 1 cut(s) 244
BseXI GCAGC 2 cut(s) 514, 550
Bsh1236I CGCG 2 cut(s) 183, 373
Bsh1285I CGRYCG 3 cut(s) 494, 567, 660
BshFI GGCC 1 cut(s) 38
BshNI GGYRCC 1 cut(s) 301
BshVI ATCGAT 1 cut(s) 660
BsiEI CGRYCG 3 cut(s) 494, 567, 660
BsiHKAI GWGCWC 1 cut(s) 281
BsiSI CCGG 7 cut(s) 122, 440, 453, 490, 567, 582, 705
BslFI GGGAC 1 cut(s) 67
BslI CCNNNNNNNGG 3 cut(s) 66, 121, 489
BsmAI GTCTC 3 cut(s) 61, 92, 501
BsmBI CGTCTC 3 cut(s) 61, 92, 501
BsmFI GGGAC 1 cut(s) 67
BsnI GGCC 1 cut(s) 38
Bsp1286I GDGCHC 3 cut(s) 281, 370, 467
Bsp143I GATC 6 cut(s) 3, 71, 361, 469, 638, 657
BspACI CCGC 8 cut(s) 181, 196, 285, 371, 503, 519, 522, 535
BspANI GGCC 1 cut(s) 38
BspCNI CTCAG 4 cut(s) 298, 396, 624, 698
BspDI ATCGAT 1 cut(s) 660
BspFNI CGCG 2 cut(s) 183, 373
BspLI GGNNCC 3 cut(s) 83, 303, 561
BspPI GGATC 1 cut(s) 66
BspT107I GGYRCC 1 cut(s) 301
BsrI ACTGG 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 6 cut(s) 3, 71, 361, 469, 638, 657
BssNI GRCGYC 2 cut(s) 132, 588
BssSI CACGAG 1 cut(s) 151
Bst2BI CACGAG 1 cut(s) 151
Bst2UI CCWGG 1 cut(s) 299
Bst6I CTCTTC 1 cut(s) 122
BstACI GRCGYC 2 cut(s) 132, 588
BstDEI CTNAG 5 cut(s) 31, 306, 404, 632, 685
BstDSI CCRYGG 1 cut(s) 157
BstF5I GGATG 1 cut(s) 39
BstFNI CGCG 2 cut(s) 183, 373
BstH2I RGCGCY 1 cut(s) 528
BstHHI GCGC 2 cut(s) 185, 527
BstKTI GATC 6 cut(s) 6, 74, 364, 472, 641, 660
BstMAI GTCTC 3 cut(s) 61, 92, 501
BstMBI GATC 6 cut(s) 3, 71, 361, 469, 638, 657
BstMCI CGRYCG 3 cut(s) 494, 567, 660
BstNI CCWGG 1 cut(s) 299
BstSCI CCNGG 3 cut(s) 120, 297, 703
BstUI CGCG 2 cut(s) 183, 373
BstV1I GCAGC 2 cut(s) 514, 550
Bsu15I ATCGAT 1 cut(s) 660
BsuRI GGCC 1 cut(s) 38
BsuTUI ATCGAT 1 cut(s) 660
BtgI CCRYGG 1 cut(s) 157
BtrI CACGTC 1 cut(s) 262
BtsCI GGATG 1 cut(s) 39
CfoI GCGC 2 cut(s) 185, 527
Cfr13I GGNCC 2 cut(s) 81, 559
ClaI ATCGAT 1 cut(s) 660
CseI GACGC 1 cut(s) 140
Csp6I GTAC 2 cut(s) 247, 340
CviQI GTAC 2 cut(s) 247, 340
DdeI CTNAG 5 cut(s) 31, 306, 404, 632, 685
DpnI GATC 6 cut(s) 5, 73, 363, 471, 640, 659
DpnII GATC 6 cut(s) 3, 71, 361, 469, 638, 657
Eam1104I CTCTTC 1 cut(s) 122
EarI CTCTTC 1 cut(s) 122
EciI GGCGGA 1 cut(s) 185
Eco24I GRGCYC 2 cut(s) 370, 467
Eco47I GGWCC 2 cut(s) 81, 559
Eco57I CTGAAG 1 cut(s) 582
EcoRII CCWGG 1 cut(s) 297
EcoT38I GRGCYC 2 cut(s) 370, 467
Esp3I CGTCTC 3 cut(s) 61, 92, 501
FaiI YATR 3 cut(s) 384, 417, 644
FaqI GGGAC 1 cut(s) 67
FauI CCCGC 1 cut(s) 378
Fnu4HI GCNGC 7 cut(s) 285, 504, 520, 523, 528, 536, 539
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 2 cut(s) 370, 467
Fsp4HI GCNGC 7 cut(s) 285, 504, 520, 523, 528, 536, 539
GlaI GCGC 2 cut(s) 184, 526
GluI GCNGC 7 cut(s) 285, 504, 520, 523, 528, 536, 539
GsuI CTGGAG 2 cut(s) 43, 370
HaeII RGCGCY 1 cut(s) 528
HaeIII GGCC 1 cut(s) 38
HapII CCGG 7 cut(s) 122, 440, 453, 490, 567, 582, 705
HgaI GACGC 1 cut(s) 140
HhaI GCGC 2 cut(s) 185, 527
Hin1I GRCGYC 2 cut(s) 132, 588
Hin6I GCGC 2 cut(s) 183, 525
HinP1I GCGC 2 cut(s) 183, 525
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HinfI GANTC 4 cut(s) 22, 266, 508, 634
HpaII CCGG 7 cut(s) 122, 440, 453, 490, 567, 582, 705
HphI GGTGA 1 cut(s) 467
Hpy166II GTNNAC 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 27, 559, 633
Hpy188III TCNNGA 2 cut(s) 151, 349
Hpy8I GTNNAC 1 cut(s) 178
Hpy99I CGWCG 2 cut(s) 266, 590
HpyAV CCTTC 2 cut(s) 103, 229
HpyCH4IV ACGT 3 cut(s) 261, 574, 588
HpyCH4V TGCA 1 cut(s) 530
HpyF3I CTNAG 5 cut(s) 31, 306, 404, 632, 685
HpySE526I ACGT 3 cut(s) 261, 574, 588
Hsp92I GRCGYC 2 cut(s) 132, 588
HspAI GCGC 2 cut(s) 183, 525
Kzo9I GATC 6 cut(s) 3, 71, 361, 469, 638, 657
LmnI GCTCC 3 cut(s) 351, 442, 492
Lsp1109I GCAGC 2 cut(s) 514, 550
MaeII ACGT 3 cut(s) 261, 574, 588
MaeIII GTNAC 1 cut(s) 374
MalI GATC 6 cut(s) 5, 73, 363, 471, 640, 659
MboI GATC 6 cut(s) 3, 71, 361, 469, 638, 657
MboII GAAGA 4 cut(s) 109, 229, 316, 371
MhlI GDGCHC 3 cut(s) 281, 370, 467
MluCI AATT 2 cut(s) 202, 420
MlyI GAGTC 2 cut(s) 275, 643
MmeI TCCRAC 1 cut(s) 50
MspI CCGG 7 cut(s) 122, 440, 453, 490, 567, 582, 705
MspR9I CCNGG 3 cut(s) 122, 299, 705
MvaI CCWGG 1 cut(s) 299
MvnI CGCG 2 cut(s) 183, 373
NciI CCSGG 2 cut(s) 122, 705
NdeII GATC 6 cut(s) 3, 71, 361, 469, 638, 657
NlaIV GGNNCC 3 cut(s) 83, 303, 561
NmeAIII GCCGAG 1 cut(s) 193
NmuCI GTSAC 1 cut(s) 374
PcsI WCGNNNNNNNCGW 5 cut(s) 165, 171, 370, 625, 634
PfeI GAWTC 2 cut(s) 22, 508
PflMI CCANNNNNTGG 1 cut(s) 66
PkrI GCNGC 7 cut(s) 286, 505, 521, 524, 529, 537, 540
Ple19I CGATCG 1 cut(s) 660
PleI GAGTC 2 cut(s) 274, 642
PpsI GAGTC 2 cut(s) 274, 642
Psp6I CCWGG 1 cut(s) 297
PspGI CCWGG 1 cut(s) 297
PspN4I GGNNCC 3 cut(s) 83, 303, 561
PspPI GGNCC 2 cut(s) 81, 559
PvuI CGATCG 1 cut(s) 660
RsaI GTAC 2 cut(s) 248, 341
RsaNI GTAC 2 cut(s) 247, 340
SatI GCNGC 7 cut(s) 285, 504, 520, 523, 528, 536, 539
Sau3AI GATC 6 cut(s) 3, 71, 361, 469, 638, 657
Sau96I GGNCC 2 cut(s) 81, 559
ScaI AGTACT 1 cut(s) 248
SchI GAGTC 2 cut(s) 275, 643
ScrFI CCNGG 3 cut(s) 122, 299, 705
SduI GDGCHC 3 cut(s) 281, 370, 467
SinI GGWCC 2 cut(s) 81, 559
Sse9I AATT 2 cut(s) 202, 420
SsiI CCGC 8 cut(s) 181, 196, 285, 371, 503, 519, 522, 535
StyD4I CCNGG 3 cut(s) 120, 297, 703
TaiI ACGT 3 cut(s) 264, 577, 591
TaqI TCGA 8 cut(s) 99, 264, 318, 330, 364, 637, 656, 660
TasI AATT 2 cut(s) 202, 420
TatI WGTACW 1 cut(s) 246
TauI GCSGC 5 cut(s) 287, 506, 522, 525, 538
TfiI GAWTC 2 cut(s) 22, 508
TseFI GTSAC 1 cut(s) 374
TseI GCWGC 2 cut(s) 527, 538
Tsp45I GTSAC 1 cut(s) 374
TspDTI ATGAA 2 cut(s) 223, 316
Van91I CCANNNNNTGG 1 cut(s) 66
VpaK11BI GGWCC 2 cut(s) 81, 559
ZraI GACGTC 1 cut(s) 589
ZrmI AGTACT 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.